Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Reverse (-)

5903417 .. 5904533

Gene Structure 1117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCATCGCCGACTCCTCGGCAACGCCACAGAGCTGCCTTACAACAATGGCAACCGGACAGCCGATTCCTACGTTAGCGAGACGAATTTCGACACAAACATGGTGATCATCTTGGCGGCTCTCTTGTGTGCCCTTATATGCGCTCTTGGCTTGAACTCAATAGTGCGGTGCGCGCTCCGCTGCAGCCACAGGTTTGCTCTTGAGACCCCGGAGCAGGCCGCGGCACGACTCGCGGCTACAGGGCTCAAGAAGAGTCATTTGAGGCAGTTACCGGTGGCCGTTTACGGCGAAGGGACACATATTCCGGCGACCGAGTGTCCGATCTGTCTTGGAGAGTTTGAGGAGGGCGAGAAGGTTAGGGTACTGCCAAAATGTAACCACGGATTCCATGTGAGGTGCATAGACACTTGGCTTGTGTCACACTCATCATGCCCGAATTGTCGGCATTCACTGCTGGAGCATCAACAACCATCGAAGAAAACTAGAACTACCAGTCGTAACATCAGTGGCGCTAGTTCCGAAGCAACAGCTAATCCATCACCAACAACAGCCGGTGAGTCTGACCAAGAAGGCAGAGTAGTTCTGGTGATTGATGAAGCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

202

Amino Acids

21.9

Weight (kDa)

7.6

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	105 - 148	1.2e-15	Ring finger domain
zf-RING_11	PF17123	105 - 134	1.4e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	105 - 147	1.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	105 - 148	2.9e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	106 - 147	1.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	173, 221, 233
AciI	CCGC	6 cut(s)	116, 166, 178, 219, 221, 233
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgeI	ACCGGT	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	154
AhdI	GACNNNNNGTC	1 cut(s)	315
AluBI	AGCT	2 cut(s)	34, 530
AluI	AGCT	2 cut(s)	34, 530
Alw26I	GTCTC	2 cut(s)	74, 197
AoxI	GGCC	2 cut(s)	216, 276
ApeKI	GCWGC	3 cut(s)	34, 180, 183
ApoI	RAATTY	1 cut(s)	85
AsiGI	ACCGGT	1 cut(s)	271
AspLEI	GCGC	4 cut(s)	143, 173, 175, 512
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	115, 531, 566, 598
BaeGI	GKGCMC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	21, 167, 195
BccI	CCATC	2 cut(s)	478, 544
BceAI	ACGGC	2 cut(s)	263, 301
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	74, 197
BfaI	CTAG	2 cut(s)	483, 513
BfmI	CTRYAG	2 cut(s)	181, 237
BfoI	RGCGCY	1 cut(s)	513
BisI	GCNGC	7 cut(s)	35, 117, 181, 184, 219, 222, 234
BlsI	GCNGC	7 cut(s)	36, 118, 182, 185, 220, 223, 235
Bme1390I	CCNGG	1 cut(s)	209
BmeRI	GACNNNNNGTC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	13, 469
BpmI	CTGGAG	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	221, 230
BpuMI	CCSGG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	16, 207, 219, 379
BsaWI	WCCGGW	2 cut(s)	54, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	2 cut(s)	271, 551
Bse1I	ACTGG	1 cut(s)	492
BseDI	CCNNGG	4 cut(s)	16, 207, 219, 379
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	492
BsePI	GCGCGC	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	5, 356
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	21, 167, 195
Bsh1236I	CGCG	3 cut(s)	173, 221, 233
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	218, 278
BshTI	ACCGGT	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	5 cut(s)	55, 209, 272, 305, 552
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	74, 197
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	218, 278
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	133, 246
Bsp143I	GATC	2 cut(s)	105, 321
BspACI	CCGC	6 cut(s)	116, 166, 178, 219, 221, 233
BspANI	GGCC	2 cut(s)	218, 278
BspFNI	CGCG	3 cut(s)	173, 221, 233
BspMAI	CTGCAG	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	271, 551
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	2 cut(s)	271, 551
BssECI	CCNNGG	4 cut(s)	16, 207, 219, 379
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	2 cut(s)	105, 321
Bst6I	CTCTTC	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	173, 216
BstDSI	CCRYGG	2 cut(s)	219, 379
BstFNI	CGCG	3 cut(s)	173, 221, 233
BstH2I	RGCGCY	1 cut(s)	513
BstHHI	GCGC	4 cut(s)	143, 173, 175, 512
BstKTI	GATC	2 cut(s)	108, 324
BstMAI	GTCTC	2 cut(s)	74, 197
BstMBI	GATC	2 cut(s)	105, 321
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 172, 177, 230, 451
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	2 cut(s)	181, 237
BstSLI	GKGCMC	1 cut(s)	133
BstUI	CGCG	3 cut(s)	173, 221, 233
BstV1I	GCAGC	3 cut(s)	21, 167, 195
BsuRI	GGCC	2 cut(s)	218, 278
BtgI	CCRYGG	2 cut(s)	219, 379
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	449, 511
Cac8I	GCNNGC	2 cut(s)	173, 216
CfoI	GCGC	4 cut(s)	143, 173, 175, 512
Cfr10I	RCCGGY	2 cut(s)	271, 551
Cfr42I	CCGCGG	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	362
CspAI	ACCGGT	1 cut(s)	271
CviAII	CATG	3 cut(s)	100, 389, 429
CviQI	GTAC	1 cut(s)	362
DpnI	GATC	2 cut(s)	107, 323
DpnII	GATC	2 cut(s)	105, 321
DriI	GACNNNNNGTC	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	245
Eam1105I	GACNNNNNGTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	103, 392, 432
FaiI	YATR	7 cut(s)	101, 137, 139, 300, 390, 401, 430
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	99, 388, 428
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	7 cut(s)	35, 117, 181, 184, 219, 222, 234
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	7 cut(s)	35, 117, 181, 184, 219, 222, 234
FspBI	CTAG	2 cut(s)	483, 513
GlaI	GCGC	4 cut(s)	142, 172, 174, 511
GluI	GCNGC	7 cut(s)	35, 117, 181, 184, 219, 222, 234
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	513
HaeIII	GGCC	2 cut(s)	218, 278
HapII	CCGG	5 cut(s)	55, 209, 272, 305, 552
HhaI	GCGC	4 cut(s)	143, 173, 175, 512
Hin1II	CATG	3 cut(s)	103, 392, 432
Hin6I	GCGC	4 cut(s)	141, 171, 173, 510
HinP1I	GCGC	4 cut(s)	141, 171, 173, 510
HinfI	GANTC	6 cut(s)	12, 65, 228, 253, 384, 557
HpaII	CCGG	5 cut(s)	55, 209, 272, 305, 552
HphI	GGTGA	4 cut(s)	115, 531, 566, 598
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	3 cut(s)	321, 520, 562
Hpy188III	TCNNGA	2 cut(s)	200, 247
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	284, 346, 563
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	4, 183, 399
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 172, 177, 230, 451
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	103, 392, 432
HspAI	GCGC	4 cut(s)	141, 171, 173, 510
Ksp22I	TGATCA	1 cut(s)	105
KspI	CCGCGG	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	105, 321
LmnI	GCTCC	3 cut(s)	180, 211, 457
Lsp1109I	GCAGC	3 cut(s)	21, 167, 195
LweI	GCATC	2 cut(s)	13, 469
MaeI	CTAG	2 cut(s)	483, 513
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	4 cut(s)	267, 374, 417, 497
MalI	GATC	2 cut(s)	107, 323
MboI	GATC	2 cut(s)	105, 321
MboII	GAAGA	2 cut(s)	262, 487
MhlI	GDGCHC	2 cut(s)	133, 246
MluCI	AATT	2 cut(s)	85, 436
MlyI	GAGTC	4 cut(s)	6, 222, 262, 566
MnlI	CCTC	5 cut(s)	26, 255, 334, 337, 387
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	2 cut(s)	180, 221
MspI	CCGG	5 cut(s)	55, 209, 272, 305, 552
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	445
MvnI	CGCG	3 cut(s)	173, 221, 233
MwoI	GCNNNNNNNGC	5 cut(s)	147, 172, 177, 230, 451
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	105, 321
NlaIII	CATG	3 cut(s)	103, 392, 432
NmuCI	GTSAC	1 cut(s)	417
NsiI	ATGCAT	1 cut(s)	6
PauI	GCGCGC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	65, 384
PinAI	ACCGGT	1 cut(s)	271
PkrI	GCNGC	7 cut(s)	36, 118, 182, 185, 220, 223, 235
PleI	GAGTC	4 cut(s)	6, 222, 261, 565
PpsI	GAGTC	4 cut(s)	6, 222, 261, 565
PstI	CTGCAG	1 cut(s)	185
PteI	GCGCGC	1 cut(s)	171
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	98
SacII	CCGCGG	1 cut(s)	222
SatI	GCNGC	7 cut(s)	35, 117, 181, 184, 219, 222, 234
Sau3AI	GATC	2 cut(s)	105, 321
SchI	GAGTC	4 cut(s)	6, 222, 262, 566
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	133, 246
SetI	ASST	7 cut(s)	36, 75, 194, 357, 398, 532, 605
SfaNI	GCATC	2 cut(s)	13, 469
SfcI	CTRYAG	2 cut(s)	181, 237
Sfr303I	CCGCGG	1 cut(s)	222
SgrBI	CCGCGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	200, 245
SmoI	CTYRAG	2 cut(s)	200, 245
Sse9I	AATT	2 cut(s)	85, 436
SsiI	CCGC	6 cut(s)	116, 166, 178, 219, 221, 233
SspMI	CTAG	2 cut(s)	483, 513
StyD4I	CCNGG	1 cut(s)	207
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	90, 473
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	2 cut(s)	85, 436
TauI	GCSGC	4 cut(s)	119, 221, 224, 236
TfiI	GAWTC	2 cut(s)	65, 384
TscAI	CASTG	2 cut(s)	456, 511
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	3 cut(s)	34, 180, 183
Tsp45I	GTSAC	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	456, 511
XapI	RAATTY	1 cut(s)	85
XspI	CTAG	2 cut(s)	483, 513
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.