Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Forward (+)

27158594 .. 27160599

Gene Structure 2006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G263800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTAACTCTTCATCACCGTCCACACCGCCTACTTCTAGACCCATCAGGATCATCATCATCATCATCATCATCATCATCATCATCAACCACACCAGACCCAGCCAATGGAAGCAGGACACGTGGGACATACACCAATGAGGCCAACTTTGACACCAACATGGTCATCATCCTAGCAGCCCTGCTCTGTGCACTGATATTTGCTCTGGGGCTAAACTCAATCGTGCGCTGTGCTTTAAGATGCAGCAGAAGGTTCTCTTTTGAGACGCCAGATGAGACCGCTGCGCGCTTAGCAGCCACAGGGCTGAAAAAGAGCACATTGCGTCAAATTCCCATTGTGGCATATGGCTCAGGGGCTAATATTCCTGCCACAGACTGCCCAATTTGCCTTGGAGAATTTCAAGATGGCCAGAAAGTGAGGCTGCTGCCAAAATGCAACCATGGATTTCATGTCAGGTGCATAGACACTTGGTTTTTGTCACACTCTTCGTGCCCAACTTGCCGCCACTCGTTGCTTGAACAGCCAGCTGCAGCTTCAGATTCTGCAGAAGTTGCTGATGCTAGACATACTGCTGGAAATGCATCCTCTGGAGGTCAAGGTGATGTGCCAATATCTGTTGATGAAGCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

211

Amino Acids

22.2

Weight (kDa)

7.06

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccII	CGCG	1 cut(s)	286
AciI	CCGC	3 cut(s)	28, 279, 502
AclWI	GGATC	1 cut(s)	58
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	327, 395
AcuI	CTGAAG	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	401, 518
AluBI	AGCT	2 cut(s)	527, 533
AluI	AGCT	2 cut(s)	527, 533
Alw21I	GWGCWC	2 cut(s)	193, 317
Alw26I	GTCTC	2 cut(s)	257, 269
Alw44I	GTGCAC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	542
AoxI	GGCC	2 cut(s)	141, 406
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	8 cut(s)	176, 243, 281, 293, 421, 424, 527, 530
ApoI	RAATTY	2 cut(s)	327, 395
AspLEI	GCGC	3 cut(s)	228, 286, 288
AsuHPI	GGTGA	2 cut(s)	8, 611
BaeGI	GKGCMC	2 cut(s)	193, 494
BalI	TGGCCA	1 cut(s)	408
BbrPI	CACGTG	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	193, 317
BbvI	GCAGC	8 cut(s)	188, 255, 268, 305, 408, 411, 514, 542
BccI	CCATC	2 cut(s)	52, 398
BcoDI	GTCTC	2 cut(s)	257, 269
BfaI	CTAG	3 cut(s)	38, 173, 561
BfmI	CTRYAG	2 cut(s)	528, 543
BisI	GCNGC	9 cut(s)	177, 244, 282, 294, 422, 425, 502, 528, 531
BlpI	GCTNAGC	1 cut(s)	289
BlsI	GCNGC	9 cut(s)	178, 245, 283, 295, 423, 426, 503, 529, 532
BmsI	GCATC	3 cut(s)	230, 547, 590
BpmI	CTGGAG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	388, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	388, 439
BseGI	GGATG	2 cut(s)	168, 581
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	627
BsePI	GCGCGC	1 cut(s)	284
BseSI	GKGCMC	2 cut(s)	193, 494
BseXI	GCAGC	8 cut(s)	188, 255, 268, 305, 408, 411, 514, 542
BseYI	CCCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	143, 408
BsiHKAI	GWGCWC	2 cut(s)	193, 317
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	2 cut(s)	257, 269
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	143, 408
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	193, 317, 494
Bsp143I	GATC	1 cut(s)	50
Bsp1720I	GCTNAGC	1 cut(s)	289
Bsp19I	CCATGG	1 cut(s)	439
BspACI	CCGC	3 cut(s)	28, 279, 502
BspANI	GGCC	2 cut(s)	143, 408
BspCNI	CTCAG	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	286
BspMAI	CTGCAG	2 cut(s)	532, 547
BspPI	GGATC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	388, 439
BssHII	GCGCGC	1 cut(s)	284
BssMI	GATC	1 cut(s)	50
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	388, 439
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	15, 490
BstACI	GRCGYC	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	286, 525
BstDEI	CTNAG	2 cut(s)	289, 349
BstDSI	CCRYGG	1 cut(s)	439
BstF5I	GGATG	2 cut(s)	168, 581
BstFNI	CGCG	1 cut(s)	286
BstHHI	GCGC	3 cut(s)	228, 286, 288
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	2 cut(s)	257, 269
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 384, 498, 520, 551, 578
BstSFI	CTRYAG	2 cut(s)	528, 543
BstSLI	GKGCMC	2 cut(s)	193, 494
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	8 cut(s)	188, 255, 268, 305, 408, 411, 514, 542
BsuRI	GGCC	2 cut(s)	143, 408
BtgI	CCRYGG	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	168, 581
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	286, 525
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	3 cut(s)	228, 286, 288
CseI	GACGC	2 cut(s)	274, 311
CviAII	CATG	3 cut(s)	160, 440, 449
DdeI	CTNAG	2 cut(s)	289, 349
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	15, 490
EarI	CTCTTC	2 cut(s)	15, 490
Eco130I	CCWWGG	2 cut(s)	388, 439
Eco31I	GGTCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	388, 439
EcoT22I	ATGCAT	1 cut(s)	583
ErhI	CCWWGG	2 cut(s)	388, 439
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	3 cut(s)	163, 443, 452
FaiI	YATR	8 cut(s)	130, 161, 343, 345, 441, 450, 461, 567
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	159, 439, 448
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	9 cut(s)	177, 244, 282, 294, 422, 425, 502, 528, 531
FokI	GGATG	2 cut(s)	155, 568
Fsp4HI	GCNGC	9 cut(s)	177, 244, 282, 294, 422, 425, 502, 528, 531
FspBI	CTAG	3 cut(s)	38, 173, 561
GlaI	GCGC	3 cut(s)	227, 285, 287
GluI	GCNGC	9 cut(s)	177, 244, 282, 294, 422, 425, 502, 528, 531
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	2 cut(s)	143, 408
HgaI	GACGC	2 cut(s)	274, 311
HhaI	GCGC	3 cut(s)	228, 286, 288
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	163, 443, 452
Hin6I	GCGC	3 cut(s)	226, 284, 286
HinP1I	GCGC	3 cut(s)	226, 284, 286
HinfI	GANTC	1 cut(s)	539
HphI	GGTGA	2 cut(s)	8, 611
Hpy166II	GTNNAC	2 cut(s)	23, 191
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	4 cut(s)	38, 48, 401, 588
Hpy8I	GTNNAC	2 cut(s)	23, 191
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	7 cut(s)	191, 243, 435, 459, 530, 545, 581
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 384, 498, 520, 551, 578
HpyF3I	CTNAG	2 cut(s)	289, 349
HpySE526I	ACGT	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	163, 443, 452
HspAI	GCGC	3 cut(s)	226, 284, 286
Kzo9I	GATC	1 cut(s)	50
Lsp1109I	GCAGC	8 cut(s)	188, 255, 268, 305, 408, 411, 514, 542
LweI	GCATC	3 cut(s)	230, 547, 590
MaeI	CTAG	3 cut(s)	38, 173, 561
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	2 cut(s)	4, 477
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	477
MhlI	GDGCHC	3 cut(s)	193, 317, 494
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	3 cut(s)	327, 381, 395
MluNI	TGGCCA	1 cut(s)	408
MnlI	CCTC	4 cut(s)	133, 411, 584, 595
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	281, 527
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	6 cut(s)	290, 384, 498, 520, 551, 578
NcoI	CCATGG	1 cut(s)	439
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	3 cut(s)	163, 443, 452
NmuCI	GTSAC	1 cut(s)	477
NsiI	ATGCAT	1 cut(s)	583
PauI	GCGCGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	9 cut(s)	178, 245, 283, 295, 423, 426, 503, 529, 532
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
Ppu21I	YACGTR	1 cut(s)	122
PspCI	CACGTG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	100
PstI	CTGCAG	2 cut(s)	532, 547
PstNI	CAGNNNCTG	1 cut(s)	542
PteI	GCGCGC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	9 cut(s)	177, 244, 282, 294, 422, 425, 502, 528, 531
Sau3AI	GATC	1 cut(s)	50
SduI	GDGCHC	3 cut(s)	193, 317, 494
SetI	ASST	7 cut(s)	124, 254, 458, 529, 535, 595, 601
SfaNI	GCATC	3 cut(s)	230, 547, 590
SfcI	CTRYAG	2 cut(s)	528, 543
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	327, 381, 395
SsiI	CCGC	3 cut(s)	28, 279, 502
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	3 cut(s)	38, 173, 561
StyI	CCWWGG	2 cut(s)	388, 439
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	124
TasI	AATT	3 cut(s)	327, 381, 395
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	8 cut(s)	176, 243, 281, 293, 421, 424, 527, 530
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	189
XapI	RAATTY	2 cut(s)	327, 395
XbaI	TCTAGA	1 cut(s)	37
XspI	CTAG	3 cut(s)	38, 173, 561
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.