Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Forward (+)

18281294 .. 18281893

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCATCGACATCTCCTCGGAACAGAGGTTAACATGGCGGCGCCGTTGTCCAATGGAAACAGAGCCGCCGATTCGTACGTTAGCGAGGCCAAGTTCGACACCAACATGGTGATCATATTGGCTGCCTTATTGTGTGCTTTGATATGCGCACTTGGTCTCAATTCGTTCGTCCGCTGCGCCCTTCGTTGCAGCCGCAGGTTCGCTCTCGAGACGCCGGAGCAGGTGGCTGAGCAGTTGGCCGCCACCGGCTTGAAGAAGAAGCATTTACGGCAAATCCCAATTGCGGTGTACGGCTCCGGCGTGAATATTCCGGCCACCGAATGCCCTATCTGTCTTGCGGAGTTCGAAGACGGAGAAAAAGTTCGAGTCTTGCCGAAATGCCATCACGGATTCCACGTGAGGTGCATAGACACTTGGCTTTTGTCGCACTCGTCGTGCCCGAATTGTCGGCATTCGCTGCTGAGTACTAGTTCTGCTGTTGCGGCTGCAGATTCAAATCAAGAAGCTAATGCGGCGGCGGAGGGGTCATCGGCAGCAGCCACCAACGAGTCCGGCCAGCAAGGTGGCAGAGTAGTCGTAGTGGTTGAGCAGGGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

200

Amino Acids

21.11

Weight (kDa)

6.69

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	107 - 150	4.1e-15	Ring finger domain
zf-RING_11	PF17123	107 - 136	3.4e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	107 - 149	5.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	107 - 150	5.7e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	108 - 149	1.6e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc16I	TGCGCA	1 cut(s)	148
Acc36I	ACCTGC	2 cut(s)	186, 211
AccB1I	GGYRCC	1 cut(s)	40
AcoI	YGGCCR	3 cut(s)	237, 312, 553
AcvI	CACGTG	1 cut(s)	397
AcyI	GRCGYC	2 cut(s)	41, 212
AfaI	GTAC	3 cut(s)	77, 290, 466
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	253, 495
AhlI	ACTAGT	1 cut(s)	467
AloI	GAACNNNNNNTCC	2 cut(s)	345, 377
AluBI	AGCT	1 cut(s)	506
AluI	AGCT	1 cut(s)	506
Alw26I	GTCTC	2 cut(s)	161, 203
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	4 cut(s)	87, 237, 312, 553
ApeKI	GCWGC	7 cut(s)	122, 174, 189, 457, 485, 533, 536
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	3 cut(s)	43, 149, 179
AsuHPI	GGTGA	1 cut(s)	121
AsuII	TTCGAA	1 cut(s)	345
AvaI	CYCGRG	1 cut(s)	206
BaeGI	GKGCMC	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	7 cut(s)	109, 161, 201, 444, 472, 545, 548
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	3 cut(s)	28, 284, 307
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	161, 203
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	44
BfuAI	ACCTGC	2 cut(s)	186, 211
BlpI	GCTNAGC	1 cut(s)	228
BmcAI	AGTACT	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	42, 295
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	354
Bpu1102I	GCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	2 cut(s)	41, 212
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	219, 452
BseRI	GAGGAG	1 cut(s)	5
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	7 cut(s)	109, 161, 201, 444, 472, 545, 548
BshFI	GGCC	4 cut(s)	89, 239, 314, 555
BshNI	GGYRCC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	5 cut(s)	215, 246, 297, 311, 552
BsiWI	CGTACG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	161, 203
BsmBI	CGTCTC	1 cut(s)	203
BsmI	GAATGC	2 cut(s)	326, 451
BsnI	GGCC	4 cut(s)	89, 239, 314, 555
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	111
Bsp1720I	GCTNAGC	1 cut(s)	228
BspANI	GGCC	4 cut(s)	89, 239, 314, 555
BspCNI	CTCAG	2 cut(s)	220, 453
BspLI	GGNNCC	2 cut(s)	42, 295
BspMAI	CTGCAG	1 cut(s)	490
BspMI	ACCTGC	2 cut(s)	186, 211
BspT104I	TTCGAA	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	2 cut(s)	41, 212
BstACI	GRCGYC	2 cut(s)	41, 212
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	2 cut(s)	228, 461
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	43, 149, 179
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	161, 203
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	5 cut(s)	268, 424, 457, 482, 512
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	440
BstV1I	GCAGC	7 cut(s)	109, 161, 201, 444, 472, 545, 548
BstV2I	GAAGAC	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	563
BsuRI	GGCC	4 cut(s)	89, 239, 314, 555
BveI	ACCTGC	2 cut(s)	186, 211
Cac8I	GCNNGC	1 cut(s)	557
CfoI	GCGC	3 cut(s)	43, 149, 179
Cfr10I	RCCGGY	1 cut(s)	245
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	76, 289, 465
CviAII	CATG	2 cut(s)	34, 106
CviQI	GTAC	3 cut(s)	76, 289, 465
DdeI	CTNAG	2 cut(s)	228, 461
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
EaeI	YGGCCR	3 cut(s)	237, 312, 553
EciI	GGCGGA	1 cut(s)	533
Eco31I	GGTCTC	1 cut(s)	161
Eco72I	CACGTG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	2 cut(s)	37, 109
FaiI	YATR	5 cut(s)	35, 107, 116, 145, 407
FatI	CATG	2 cut(s)	33, 105
FbaI	TGATCA	1 cut(s)	111
FspAI	RTGCGCAY	1 cut(s)	148
FspBI	CTAG	1 cut(s)	468
FspI	TGCGCA	1 cut(s)	148
GlaI	GCGC	3 cut(s)	42, 148, 178
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	89, 239, 314, 555
HapII	CCGG	5 cut(s)	215, 246, 297, 311, 552
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	3 cut(s)	43, 149, 179
Hin1I	GRCGYC	2 cut(s)	41, 212
Hin1II	CATG	2 cut(s)	37, 109
Hin6I	GCGC	3 cut(s)	41, 147, 177
HinP1I	GCGC	3 cut(s)	41, 147, 177
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	5 cut(s)	71, 366, 390, 491, 548
HpaI	GTTAAC	1 cut(s)	31
HpaII	CCGG	5 cut(s)	215, 246, 297, 311, 552
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	31, 289
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	206, 208, 500
Hpy8I	GTNNAC	2 cut(s)	31, 289
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	191
HpyCH4IV	ACGT	2 cut(s)	78, 396
HpyCH4V	TGCA	4 cut(s)	4, 189, 405, 488
HpyF10VI	GCNNNNNNNGC	5 cut(s)	268, 424, 457, 482, 512
HpyF3I	CTNAG	2 cut(s)	228, 461
HpySE526I	ACGT	2 cut(s)	78, 396
Hsp92I	GRCGYC	2 cut(s)	41, 212
Hsp92II	CATG	2 cut(s)	37, 109
HspAI	GCGC	3 cut(s)	41, 147, 177
KasI	GGCGCC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	217, 299
LpnPI	CCDG	9 cut(s)	181, 206, 228, 259, 310, 324, 565, 569, 575
Lsp1109I	GCAGC	7 cut(s)	109, 161, 201, 444, 472, 545, 548
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	78, 396
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	3 cut(s)	265, 268, 359
MfeI	CAATTG	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	3 cut(s)	160, 279, 442
Mly113I	GGCGCC	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	375, 557
MnlI	CCTC	5 cut(s)	19, 26, 79, 393, 514
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	5 cut(s)	215, 246, 297, 311, 552
MunI	CAATTG	1 cut(s)	279
Mva1269I	GAATGC	2 cut(s)	326, 451
MwoI	GCNNNNNNNGC	5 cut(s)	268, 424, 457, 482, 512
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	37, 109
NlaIV	GGNNCC	2 cut(s)	42, 295
NsbI	TGCGCA	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	345
PaeR7I	CTCGAG	1 cut(s)	206
PaqCI	CACCTGC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	4 cut(s)	297, 393, 431, 437
PctI	GAATGC	2 cut(s)	326, 451
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	71, 390, 491
Pfl23II	CGTACG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	374, 556
PluTI	GGCGCC	1 cut(s)	44
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	374, 556
Ppu21I	YACGTR	1 cut(s)	397
PspCI	CACGTG	1 cut(s)	397
PspLI	CGTACG	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	42, 295
PstI	CTGCAG	1 cut(s)	490
RsaI	GTAC	3 cut(s)	77, 290, 466
RsaNI	GTAC	3 cut(s)	76, 289, 465
RseI	CAYNNNNRTG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	111
ScaI	AGTACT	1 cut(s)	466
SchI	GAGTC	2 cut(s)	375, 557
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	8 cut(s)	30, 81, 200, 225, 399, 404, 508, 565
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	486
SfoI	GGCGCC	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	345
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	3 cut(s)	160, 279, 442
SspDI	GGCGCC	1 cut(s)	40
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	468
TaiI	ACGT	2 cut(s)	81, 399
TaqI	TCGA	5 cut(s)	7, 96, 207, 345, 364
TasI	AATT	3 cut(s)	160, 279, 442
TatI	WGTACW	1 cut(s)	464
TauI	GCSGC	7 cut(s)	41, 68, 195, 242, 485, 515, 518
TfiI	GAWTC	3 cut(s)	71, 390, 491
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	7 cut(s)	122, 174, 189, 457, 485, 533, 536
TspGWI	ACGGA	2 cut(s)	366, 402
XhoI	CTCGAG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	466
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.