RLG00000026065

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019907
Physical Location & Seq
Forward (+)
325332 .. 325659
328 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026065

Sequence Viewer

Length: 306 bp
ATGATTATGTGCTCCAGCCTCGTTTTGTGGTGGCTTAAAAGGAGGCAGTCTTTTCTCGGACGTTCTTGGCTTCCGGCAGCTACCGGGGGGTCCAGCTGTCGAGGGACCTCCGGAACTAGATGTATTGTCGTGAGAGGAGGAGTTGGGTCGCTGCTCCAAGGTGGAGGAGTGGCGGCCCGAGACGCGGCAGATTCCCGGGTCGGTTTCGATGTTGATGACAACGTCGTTTTGGTGGCTCGACGAGCGACGTTGGTGCTAGAATCCTACACCACCGGCGGGATGTGGATGAAGATGAACCCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.79

Weight (kDa)

10.28

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019907)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0482111
rosa_laevigata RLG00000026065 RLG00000037055
rosa_multiflora Rmu_sc0007408.1_g000004 Rmu_sc0011150.1_g000001
rosa_samantha Rh3AG246100 Rh7BG243600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 110
AciI CCGC 3 cut(s) 173, 185, 276
AfiI CCNNNNNNNGG 2 cut(s) 184, 276
AluBI AGCT 2 cut(s) 80, 96
AluI AGCT 2 cut(s) 80, 96
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 174
Ama87I CYCGRG 2 cut(s) 177, 195
Aor13HI TCCGGA 1 cut(s) 110
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 77, 151
AspS9I GGNCC 3 cut(s) 90, 105, 175
AsuC2I CCSGG 3 cut(s) 85, 196, 197
AvaI CYCGRG 2 cut(s) 177, 195
AvaII GGWCC 2 cut(s) 90, 105
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 89, 138
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BcnI CCSGG 3 cut(s) 85, 196, 197
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 2 cut(s) 117, 257
BisI GCNGC 4 cut(s) 78, 152, 174, 186
BlsI GCNGC 4 cut(s) 79, 153, 175, 187
Bme1390I CCNGG 3 cut(s) 85, 196, 197
Bme18I GGWCC 2 cut(s) 90, 105
BmeT110I CYCGRG 2 cut(s) 177, 195
BmgT120I GGNCC 3 cut(s) 90, 105, 175
BmiI GGNNCC 2 cut(s) 91, 106
BmrFI CCNGG 3 cut(s) 85, 196, 197
BpuMI CCSGG 3 cut(s) 85, 196, 197
BsaJI CCNNGG 3 cut(s) 84, 157, 195
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 276
Bse118I RCCGGY 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 110
BseDI CCNNGG 3 cut(s) 84, 157, 195
BseGI GGATG 2 cut(s) 285, 291
BseLI CCNNNNNNNGG 2 cut(s) 184, 276
BseRI GAGGAG 3 cut(s) 150, 153, 180
BseXI GCAGC 2 cut(s) 89, 138
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 14
BsiHKCI CYCGRG 2 cut(s) 177, 195
BsiSI CCGG 5 cut(s) 74, 84, 111, 196, 273
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 184, 276
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 176
BsoBI CYCGRG 2 cut(s) 177, 195
Bsp1286I GDGCHC 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 110
BspACI CCGC 3 cut(s) 173, 185, 276
BspANI GGCC 1 cut(s) 176
BspEI TCCGGA 1 cut(s) 110
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 91, 106
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 84, 157, 195
BssT1I CCWWGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 285, 291
BstFNI CGCG 1 cut(s) 185
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 182, 242
BstSCI CCNGG 3 cut(s) 83, 194, 195
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 2 cut(s) 89, 138
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 2 cut(s) 285, 291
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 90, 105, 175
Cfr9I CCCGGG 1 cut(s) 195
CseI GACGC 1 cut(s) 191
CviJI RGCY 7 cut(s) 18, 34, 70, 80, 96, 176, 236
CviKI_1 RGCY 7 cut(s) 18, 34, 70, 80, 96, 176, 236
Eco130I CCWWGG 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 90, 105
Eco88I CYCGRG 2 cut(s) 177, 195
EcoO109I RGGNCCY 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 174
FaiI YATR 1 cut(s) 8
FaqI GGGAC 1 cut(s) 118
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 4 cut(s) 78, 152, 174, 186
FokI GGATG 2 cut(s) 292, 298
Fsp4HI GCNGC 4 cut(s) 78, 152, 174, 186
FspBI CTAG 2 cut(s) 117, 257
GluI GCNGC 4 cut(s) 78, 152, 174, 186
HaeIII GGCC 1 cut(s) 176
HapII CCGG 5 cut(s) 74, 84, 111, 196, 273
HgaI GACGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 191, 260
HpaII CCGG 5 cut(s) 74, 84, 111, 196, 273
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 2 cut(s) 111, 130
Hpy99I CGWCG 3 cut(s) 227, 243, 250
HpyCH4IV ACGT 3 cut(s) 61, 222, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 242
HpySE526I ACGT 3 cut(s) 61, 222, 248
Kpn2I TCCGGA 1 cut(s) 110
LmnI GCTCC 2 cut(s) 17, 159
LpnPI CCDG 7 cut(s) 28, 87, 97, 106, 124, 209, 286
Lsp1109I GCAGC 2 cut(s) 89, 138
MaeI CTAG 2 cut(s) 117, 257
MaeII ACGT 3 cut(s) 61, 222, 248
MboII GAAGA 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 14
MnlI CCTC 7 cut(s) 29, 36, 95, 118, 128, 131, 158
MroI TCCGGA 1 cut(s) 110
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 5 cut(s) 74, 84, 111, 196, 273
MspR9I CCNGG 3 cut(s) 85, 196, 197
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 182, 242
NciI CCSGG 3 cut(s) 85, 196, 197
NlaIV GGNNCC 2 cut(s) 91, 106
PfeI GAWTC 2 cut(s) 191, 260
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 4 cut(s) 79, 153, 175, 187
PpuMI RGGWCCY 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 105
PspN4I GGNNCC 2 cut(s) 91, 106
PspPI GGNCC 3 cut(s) 90, 105, 175
PspPPI RGGWCCY 1 cut(s) 105
PsyI GACNNNGTC 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 4 cut(s) 78, 152, 174, 186
Sau96I GGNCC 3 cut(s) 90, 105, 175
ScrFI CCNGG 3 cut(s) 85, 196, 197
SduI GDGCHC 1 cut(s) 14
SetI ASST 7 cut(s) 64, 82, 98, 110, 163, 225, 251
SgrAI CRCCGGYG 1 cut(s) 272
SinI GGWCC 2 cut(s) 90, 105
SmaI CCCGGG 1 cut(s) 197
SsiI CCGC 3 cut(s) 173, 185, 276
SspMI CTAG 2 cut(s) 117, 257
StyD4I CCNGG 3 cut(s) 83, 194, 195
StyI CCWWGG 1 cut(s) 157
TaiI ACGT 3 cut(s) 64, 225, 251
TaqI TCGA 3 cut(s) 100, 207, 238
TauI GCSGC 2 cut(s) 176, 188
TfiI GAWTC 2 cut(s) 191, 260
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 2 cut(s) 77, 151
TspDTI ATGAA 1 cut(s) 302
TspMI CCCGGG 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 90, 105
XmaI CCCGGG 1 cut(s) 195
XspI CTAG 2 cut(s) 117, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.