Rmu_sc0011150.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011150.1
OG0019907
Physical Location & Seq
Reverse (-)
1 .. 1317
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011150.1_g000001.1.cds

Sequence Viewer

Length: 672 bp
atgtacctgactccgccggagatttacaacctgtccaggttcaaccgggcgttccgtggcgcggcgtcatcggatgcggtttgggaatcgaagctaccccctaattaccatgatctgcttaatttgctgcctcccgagaggtaccagaacctgtcaaagaaggacatctttgttcctgcctctgacgtcctcgttttgtcgtggcttaaaaggaggctgtcttttctcggacgttcttggcttccggcggcggccacggggacctccggaatgacgacgtattgtcgtgagaggaggagccgggtcactactcaaggcggaggagtggcgccccgagacgctgcggattcctgggtcggtttcgatgttgatgacgacgtcgttttggaggatgtcttccgggtcgacccggtagcggcagagcgggcaggtcgagtgggcgtcgagccacgtgtcgacgcactccacgtggaaggggtgcttgcatttcgggaggaggcggaggacctcggtgggctcgattcgggtgaggcagatggtgcattcgagtccgtccttgtgttccctgagcgacctgaactgggcctgaacgacttgggtttctcggcggtgtccacattaacaagtggcggcggtgaagcagacgttgtagcaatgtctgctctggttctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

224

Amino Acids

24.29

Weight (kDa)

4.64

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019907)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0482111
rosa_laevigata RLG00000026065 RLG00000037055
rosa_multiflora Rmu_sc0007408.1_g000004 Rmu_sc0011150.1_g000001
rosa_samantha Rh3AG246100 Rh7BG243600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 189, 381
Acc36I ACCTGC 1 cut(s) 419
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 2 cut(s) 141, 328
AccBSI CCGCTC 1 cut(s) 424
AccI GTMKAC 2 cut(s) 405, 456
AccII CGCG 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 252
AcvI CACGTG 2 cut(s) 452, 469
AcyI GRCGYC 5 cut(s) 65, 186, 329, 378, 441
AfaI GTAC 2 cut(s) 5, 143
AfiI CCNNNNNNNGG 3 cut(s) 61, 415, 581
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 1 cut(s) 43
AhdI GACNNNNNGTC 1 cut(s) 282
AjnI CCWGG 2 cut(s) 35, 350
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 330
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 2 cut(s) 134, 333
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 2 cut(s) 252, 583
ApeKI GCWGC 2 cut(s) 127, 341
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 2 cut(s) 62, 331
AspS9I GGNCC 3 cut(s) 261, 505, 583
AsuC2I CCSGG 4 cut(s) 47, 302, 401, 410
AsuHPI GGTGA 2 cut(s) 539, 647
AvaI CYCGRG 2 cut(s) 134, 333
AvaII GGWCC 2 cut(s) 261, 505
BanI GGYRCC 2 cut(s) 141, 328
BanII GRGCYC 1 cut(s) 519
BbrPI CACGTG 2 cut(s) 452, 469
BbsI GAAGAC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 114, 328
BccI CCATC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 37, 352
BcnI CCSGG 4 cut(s) 47, 302, 401, 410
BcoDI GTCTC 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 419
BisI GCNGC 7 cut(s) 63, 128, 249, 252, 342, 417, 631
BlsI GCNGC 7 cut(s) 64, 129, 250, 253, 343, 418, 632
Bme1390I CCNGG 6 cut(s) 37, 47, 302, 352, 401, 410
Bme18I GGWCC 2 cut(s) 261, 505
BmeRI GACNNNNNGTC 1 cut(s) 282
BmeT110I CYCGRG 2 cut(s) 134, 333
BmgT120I GGNCC 3 cut(s) 261, 505, 583
BmiI GGNNCC 4 cut(s) 143, 262, 299, 330
BmrFI CCNGG 6 cut(s) 37, 47, 302, 352, 401, 410
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 388
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 4 cut(s) 47, 302, 401, 410
BsaAI YACGTR 2 cut(s) 452, 469
BsaHI GRCGYC 5 cut(s) 65, 186, 329, 378, 441
BsaJI CCNNGG 4 cut(s) 55, 255, 351, 508
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 415, 581
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 266
BseBI CCWGG 2 cut(s) 37, 352
BseDI CCNNGG 4 cut(s) 55, 255, 351, 508
BseGI GGATG 2 cut(s) 79, 397
BseLI CCNNNNNNNGG 3 cut(s) 61, 415, 581
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 4 cut(s) 307, 310, 336, 509
BseXI GCAGC 2 cut(s) 114, 328
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 254, 585
BshNI GGYRCC 2 cut(s) 141, 328
BsiHKCI CYCGRG 2 cut(s) 134, 333
BsiSI CCGG 7 cut(s) 17, 46, 245, 267, 301, 400, 410
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 3 cut(s) 61, 415, 581
BsmAI GTCTC 1 cut(s) 330
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 2 cut(s) 254, 585
BsoBI CYCGRG 2 cut(s) 134, 333
Bsp1286I GDGCHC 1 cut(s) 519
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 1 cut(s) 112
BspANI GGCC 2 cut(s) 254, 585
BspCNI CTCAG 1 cut(s) 559
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 4 cut(s) 143, 262, 299, 330
BspMI ACCTGC 1 cut(s) 419
BspT107I GGYRCC 2 cut(s) 141, 328
BsrBI CCGCTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 1 cut(s) 585
BssECI CCNNGG 4 cut(s) 55, 255, 351, 508
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 5 cut(s) 65, 186, 329, 378, 441
Bst2UI CCWGG 2 cut(s) 37, 352
BstACI GRCGYC 5 cut(s) 65, 186, 329, 378, 441
BstAPI GCANNNNNTGC 2 cut(s) 539, 659
BstBAI YACGTR 2 cut(s) 452, 469
BstC8I GCNNGC 2 cut(s) 426, 483
BstDEI CTNAG 1 cut(s) 567
BstDSI CCRYGG 2 cut(s) 55, 255
BstF5I GGATG 2 cut(s) 79, 397
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 2 cut(s) 62, 331
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 124, 425, 539, 659
BstNI CCWGG 2 cut(s) 37, 352
BstSCI CCNGG 6 cut(s) 35, 45, 300, 350, 399, 408
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 114, 328
BstV2I GAAGAC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 254, 585
BtgI CCRYGG 2 cut(s) 55, 255
BtsCI GGATG 2 cut(s) 79, 397
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 2 cut(s) 426, 483
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 2 cut(s) 62, 331
Cfr13I GGNCC 3 cut(s) 261, 505, 583
CseI GACGC 4 cut(s) 54, 347, 430, 467
Csp6I GTAC 2 cut(s) 4, 142
CviAII CATG 1 cut(s) 110
CviJI RGCY 9 cut(s) 94, 205, 217, 241, 254, 300, 448, 517, 585
CviKI_1 RGCY 9 cut(s) 94, 205, 217, 241, 254, 300, 448, 517, 585
CviQI GTAC 2 cut(s) 4, 142
DdeI CTNAG 1 cut(s) 567
DinI GGCGCC 1 cut(s) 330
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DriI GACNNNNNGTC 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 252
Eam1105I GACNNNNNGTC 1 cut(s) 282
EciI GGCGGA 2 cut(s) 333, 515
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 261, 505
Eco72I CACGTG 2 cut(s) 452, 469
Eco88I CYCGRG 2 cut(s) 134, 333
EcoO109I RGGNCCY 2 cut(s) 261, 505
EcoRII CCWGG 2 cut(s) 35, 350
EcoT38I GRGCYC 1 cut(s) 519
EgeI GGCGCC 1 cut(s) 330
EheI GGCGCC 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 1 cut(s) 113
FaiI YATR 1 cut(s) 111
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 465, 497
FaqI GGGAC 1 cut(s) 274
FatI CATG 1 cut(s) 109
FauI CCCGC 1 cut(s) 417
FblI GTMKAC 2 cut(s) 405, 456
Fnu4HI GCNGC 7 cut(s) 63, 128, 249, 252, 342, 417, 631
FokI GGATG 2 cut(s) 86, 404
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 7 cut(s) 63, 128, 249, 252, 342, 417, 631
GlaI GCGC 2 cut(s) 61, 330
GluI GCNGC 7 cut(s) 63, 128, 249, 252, 342, 417, 631
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 2 cut(s) 254, 585
HapII CCGG 7 cut(s) 17, 46, 245, 267, 301, 400, 410
HgaI GACGC 4 cut(s) 54, 347, 430, 467
HhaI GCGC 2 cut(s) 62, 331
Hin1I GRCGYC 5 cut(s) 65, 186, 329, 378, 441
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 2 cut(s) 60, 329
HinP1I GCGC 2 cut(s) 60, 329
HincII GTYRAC 2 cut(s) 406, 457
HindII GTYRAC 2 cut(s) 406, 457
HinfI GANTC 5 cut(s) 10, 86, 347, 521, 548
HpaII CCGG 7 cut(s) 17, 46, 245, 267, 301, 400, 410
HphI GGTGA 2 cut(s) 539, 647
Hpy166II GTNNAC 3 cut(s) 406, 457, 615
Hpy188I TCNGA 3 cut(s) 73, 184, 230
Hpy188III TCNNGA 4 cut(s) 134, 267, 287, 491
Hpy8I GTNNAC 3 cut(s) 406, 457, 615
Hpy99I CGWCG 5 cut(s) 280, 380, 383, 446, 461
HpyAV CCTTC 2 cut(s) 154, 467
HpyCH4IV ACGT 7 cut(s) 186, 232, 278, 378, 451, 468, 645
HpyCH4V TGCA 2 cut(s) 485, 542
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 425, 539, 659
HpyF3I CTNAG 1 cut(s) 567
HpySE526I ACGT 7 cut(s) 186, 232, 278, 378, 451, 468, 645
Hsp92I GRCGYC 5 cut(s) 65, 186, 329, 378, 441
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 2 cut(s) 60, 329
KasI GGCGCC 1 cut(s) 328
Kpn2I TCCGGA 1 cut(s) 266
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 297
Lsp1109I GCAGC 2 cut(s) 114, 328
LweI GCATC 1 cut(s) 64
MaeII ACGT 7 cut(s) 186, 232, 278, 378, 451, 468, 645
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 424
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 2 cut(s) 103, 121
Mly113I GGCGCC 1 cut(s) 329
MlyI GAGTC 2 cut(s) 4, 557
MroI TCCGGA 1 cut(s) 266
MseI TTAA 3 cut(s) 120, 207, 620
MspI CCGG 7 cut(s) 17, 46, 245, 267, 301, 400, 410
MspR9I CCNGG 6 cut(s) 37, 47, 302, 352, 401, 410
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 2 cut(s) 37, 352
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 4 cut(s) 124, 425, 539, 659
NarI GGCGCC 1 cut(s) 329
NciI CCSGG 4 cut(s) 47, 302, 401, 410
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 4 cut(s) 143, 262, 299, 330
NmeAIII GCCGAG 1 cut(s) 584
NmuCI GTSAC 1 cut(s) 304
PcsI WCGNNNNNNNCGW 2 cut(s) 465, 516
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 86, 347, 521
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 7 cut(s) 64, 129, 250, 253, 343, 418, 632
PleI GAGTC 2 cut(s) 4, 556
PluTI GGCGCC 1 cut(s) 332
PmaCI CACGTG 2 cut(s) 452, 469
PmlI CACGTG 2 cut(s) 452, 469
PpsI GAGTC 2 cut(s) 4, 556
Ppu21I YACGTR 2 cut(s) 452, 469
PpuMI RGGWCCY 2 cut(s) 261, 505
Psp5II RGGWCCY 2 cut(s) 261, 505
Psp6I CCWGG 2 cut(s) 35, 350
PspCI CACGTG 2 cut(s) 452, 469
PspGI CCWGG 2 cut(s) 35, 350
PspN4I GGNNCC 4 cut(s) 143, 262, 299, 330
PspPI GGNCC 3 cut(s) 261, 505, 583
PspPPI RGGWCCY 2 cut(s) 261, 505
PstNI CAGNNNCTG 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 2 cut(s) 5, 143
RsaNI GTAC 2 cut(s) 4, 142
SalI GTCGAC 2 cut(s) 404, 455
SaqAI TTAA 3 cut(s) 120, 207, 620
SatI GCNGC 7 cut(s) 63, 128, 249, 252, 342, 417, 631
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 3 cut(s) 261, 505, 583
SchI GAGTC 2 cut(s) 4, 557
ScrFI CCNGG 6 cut(s) 37, 47, 302, 352, 401, 410
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 1 cut(s) 64
SfoI GGCGCC 1 cut(s) 330
SinI GGWCC 2 cut(s) 261, 505
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 2 cut(s) 103, 121
SspDI GGCGCC 1 cut(s) 328
StyD4I CCNGG 6 cut(s) 35, 45, 300, 350, 399, 408
TaiI ACGT 7 cut(s) 189, 235, 281, 381, 454, 471, 648
TaqI TCGA 8 cut(s) 89, 363, 405, 433, 444, 456, 519, 546
TasI AATT 2 cut(s) 103, 121
TauI GCSGC 5 cut(s) 65, 251, 254, 419, 633
TfiI GAWTC 3 cut(s) 86, 347, 521
Tru1I TTAA 3 cut(s) 120, 207, 620
Tru9I TTAA 3 cut(s) 120, 207, 620
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 127, 341
Tsp45I GTSAC 1 cut(s) 304
TspGWI ACGGA 2 cut(s) 44, 541
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 261, 505
XmiI GTMKAC 2 cut(s) 405, 456
ZraI GACGTC 2 cut(s) 187, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.