Rmu_sc0007408.1_g000004

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007408.1
OG0019907
Physical Location & Seq
Forward (+)
4962 .. 5861
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007408.1_g000004.1.cds

Sequence Viewer

Length: 609 bp
atgtacctgactccgccggagatttacaacctgtccaggttcaacctggcgttccgctgcgcggcgtcatcggatgcggtttgggaatcgaagctgccccctaattaccatgatctgcttaatttgctgcctcccgagaggtaccagaacctgtcaaagaaggacatctttgttcctgcctctgacgtatccagctgtcgagggacctccggaatgacgacgtattgtcgtgagaggaggagccgggtcactactcaaggcggaggagtggcgccccgagacgctgcggattcctgggtcggtttcgatgttgatgacgacgtcgttttggaggatgtcttccgagtcgacccggtagcggcagagcgggcaagtcgagtgggcgtcgagccacgtgtcgacgcactccacgtggaaggggtgcttgcatttcgggaggaggcggaggacctcggtgggctcgattcgggtgagggagacggtgcattcaaggtcgtccttgtgttccctgagcgacctgaactgggctggaatgacttgggtttctcggcggtgtccacattaacaagtggcggcggtgaagcagacgttgtagcaatgtcgttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2

Protein Analysis

202

Amino Acids

21.92

Weight (kDa)

4.49

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019907)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0482111
rosa_laevigata RLG00000026065 RLG00000037055
rosa_multiflora Rmu_sc0007408.1_g000004 Rmu_sc0011150.1_g000001
rosa_samantha Rh3AG246100 Rh7BG243600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 141
AccB1I GGYRCC 2 cut(s) 141, 271
AccBSI CCGCTC 1 cut(s) 367
AccI GTMKAC 2 cut(s) 348, 399
AccII CGCG 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 209
AcvI CACGTG 2 cut(s) 395, 412
AcyI GRCGYC 4 cut(s) 65, 272, 321, 384
AfaI GTAC 2 cut(s) 5, 143
AfiI CCNNNNNNNGG 3 cut(s) 61, 358, 524
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 2 cut(s) 43, 490
AhdI GACNNNNNGTC 1 cut(s) 225
AjnI CCWGG 3 cut(s) 35, 45, 293
AluBI AGCT 2 cut(s) 94, 195
AluI AGCT 2 cut(s) 94, 195
Alw26I GTCTC 2 cut(s) 273, 471
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 2 cut(s) 134, 276
Aor13HI TCCGGA 1 cut(s) 209
ApeKI GCWGC 4 cut(s) 57, 94, 127, 284
Asp718I GGTACC 1 cut(s) 141
AspLEI GCGC 2 cut(s) 62, 274
AspS9I GGNCC 2 cut(s) 204, 448
AsuC2I CCSGG 2 cut(s) 245, 353
AsuHPI GGTGA 2 cut(s) 482, 590
AvaI CYCGRG 2 cut(s) 134, 276
AvaII GGWCC 2 cut(s) 204, 448
BanI GGYRCC 2 cut(s) 141, 271
BanII GRGCYC 1 cut(s) 462
BbrPI CACGTG 2 cut(s) 395, 412
BbsI GAAGAC 1 cut(s) 331
BbvI GCAGC 4 cut(s) 44, 81, 114, 271
BciT130I CCWGG 3 cut(s) 37, 47, 295
BciVI GTATCC 1 cut(s) 199
BcnI CCSGG 2 cut(s) 245, 353
BcoDI GTCTC 2 cut(s) 273, 471
BfoI RGCGCY 1 cut(s) 275
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 7 cut(s) 58, 63, 95, 128, 285, 360, 574
BlsI GCNGC 7 cut(s) 59, 64, 96, 129, 286, 361, 575
Bme1390I CCNGG 5 cut(s) 37, 47, 245, 295, 353
Bme18I GGWCC 2 cut(s) 204, 448
BmeRI GACNNNNNGTC 1 cut(s) 225
BmeT110I CYCGRG 2 cut(s) 134, 276
BmgT120I GGNCC 2 cut(s) 204, 448
BmiI GGNNCC 4 cut(s) 143, 205, 242, 273
BmrFI CCNGG 5 cut(s) 37, 47, 245, 295, 353
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 240
BpuMI CCSGG 2 cut(s) 245, 353
BsaAI YACGTR 2 cut(s) 395, 412
BsaHI GRCGYC 4 cut(s) 65, 272, 321, 384
BsaJI CCNNGG 2 cut(s) 294, 451
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 358, 524
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 3 cut(s) 37, 47, 295
BseDI CCNNGG 2 cut(s) 294, 451
BseGI GGATG 2 cut(s) 79, 340
BseLI CCNNNNNNNGG 3 cut(s) 61, 358, 524
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 4 cut(s) 250, 253, 279, 452
BseXI GCAGC 4 cut(s) 44, 81, 114, 271
Bsh1236I CGCG 1 cut(s) 62
BshNI GGYRCC 2 cut(s) 141, 271
BsiHKCI CYCGRG 2 cut(s) 134, 276
BsiSI CCGG 4 cut(s) 17, 210, 244, 353
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 3 cut(s) 61, 358, 524
BsmAI GTCTC 2 cut(s) 273, 471
BsmBI CGTCTC 2 cut(s) 273, 471
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 485
BsoBI CYCGRG 2 cut(s) 134, 276
Bsp1286I GDGCHC 1 cut(s) 462
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 502
BspEI TCCGGA 1 cut(s) 209
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 4 cut(s) 143, 205, 242, 273
BspT107I GGYRCC 2 cut(s) 141, 271
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 2 cut(s) 294, 451
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 4 cut(s) 65, 272, 321, 384
Bst2UI CCWGG 3 cut(s) 37, 47, 295
Bst4CI ACNGT 1 cut(s) 482
BstACI GRCGYC 4 cut(s) 65, 272, 321, 384
BstBAI YACGTR 2 cut(s) 395, 412
BstC8I GCNNGC 2 cut(s) 369, 426
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 79, 340
BstFNI CGCG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 2 cut(s) 62, 274
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 273, 471
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 124, 368
BstNI CCWGG 3 cut(s) 37, 47, 295
BstSCI CCNGG 5 cut(s) 35, 45, 243, 293, 351
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 44, 81, 114, 271
BstV2I GAAGAC 1 cut(s) 331
BsuI GTATCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 79, 340
Cac8I GCNNGC 2 cut(s) 369, 426
CaiI CAGNNNCTG 1 cut(s) 151
CfoI GCGC 2 cut(s) 62, 274
Cfr13I GGNCC 2 cut(s) 204, 448
CseI GACGC 4 cut(s) 54, 290, 373, 410
Csp6I GTAC 2 cut(s) 4, 142
CspCI CAANNNNNGTGG 2 cut(s) 360, 395
CviAII CATG 1 cut(s) 110
CviJI RGCY 6 cut(s) 94, 195, 243, 391, 460, 528
CviKI_1 RGCY 6 cut(s) 94, 195, 243, 391, 460, 528
CviQI GTAC 2 cut(s) 4, 142
DdeI CTNAG 1 cut(s) 510
DinI GGCGCC 1 cut(s) 273
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DriI GACNNNNNGTC 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 225
EciI GGCGGA 2 cut(s) 276, 458
Eco24I GRGCYC 1 cut(s) 462
Eco47I GGWCC 2 cut(s) 204, 448
Eco72I CACGTG 2 cut(s) 395, 412
Eco88I CYCGRG 2 cut(s) 134, 276
EcoO109I RGGNCCY 2 cut(s) 204, 448
EcoRII CCWGG 3 cut(s) 35, 45, 293
EcoT38I GRGCYC 1 cut(s) 462
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
Esp3I CGTCTC 2 cut(s) 273, 471
FaeI CATG 1 cut(s) 113
FaiI YATR 1 cut(s) 111
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 408, 440
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 109
FauI CCCGC 1 cut(s) 360
FblI GTMKAC 2 cut(s) 348, 399
Fnu4HI GCNGC 7 cut(s) 58, 63, 95, 128, 285, 360, 574
FokI GGATG 2 cut(s) 86, 347
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 7 cut(s) 58, 63, 95, 128, 285, 360, 574
GlaI GCGC 2 cut(s) 61, 273
GluI GCNGC 7 cut(s) 58, 63, 95, 128, 285, 360, 574
HaeII RGCGCY 1 cut(s) 275
HapII CCGG 4 cut(s) 17, 210, 244, 353
HgaI GACGC 4 cut(s) 54, 290, 373, 410
HhaI GCGC 2 cut(s) 62, 274
Hin1I GRCGYC 4 cut(s) 65, 272, 321, 384
Hin1II CATG 1 cut(s) 113
Hin6I GCGC 2 cut(s) 60, 272
HinP1I GCGC 2 cut(s) 60, 272
HincII GTYRAC 2 cut(s) 349, 400
HindII GTYRAC 2 cut(s) 349, 400
HinfI GANTC 5 cut(s) 10, 86, 290, 345, 464
HpaII CCGG 4 cut(s) 17, 210, 244, 353
HphI GGTGA 2 cut(s) 482, 590
Hpy166II GTNNAC 3 cut(s) 349, 400, 558
Hpy188I TCNGA 3 cut(s) 73, 184, 344
Hpy188III TCNNGA 4 cut(s) 134, 210, 230, 434
Hpy8I GTNNAC 3 cut(s) 349, 400, 558
Hpy99I CGWCG 5 cut(s) 223, 323, 326, 389, 404
HpyAV CCTTC 2 cut(s) 154, 410
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 6 cut(s) 186, 221, 321, 394, 411, 588
HpyCH4V TGCA 2 cut(s) 428, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 368
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 6 cut(s) 186, 221, 321, 394, 411, 588
Hsp92I GRCGYC 4 cut(s) 65, 272, 321, 384
Hsp92II CATG 1 cut(s) 113
HspAI GCGC 2 cut(s) 60, 272
KasI GGCGCC 1 cut(s) 271
Kpn2I TCCGGA 1 cut(s) 209
KpnI GGTACC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 4 cut(s) 44, 81, 114, 271
LweI GCATC 1 cut(s) 64
MaeII ACGT 6 cut(s) 186, 221, 321, 394, 411, 588
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 367
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 2 cut(s) 103, 121
Mly113I GGCGCC 1 cut(s) 272
MlyI GAGTC 2 cut(s) 4, 354
MroI TCCGGA 1 cut(s) 209
MseI TTAA 2 cut(s) 120, 563
MspA1I CMGCKG 2 cut(s) 57, 195
MspI CCGG 4 cut(s) 17, 210, 244, 353
MspR9I CCNGG 5 cut(s) 37, 47, 245, 295, 353
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 3 cut(s) 37, 47, 295
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 124, 368
NarI GGCGCC 1 cut(s) 272
NciI CCSGG 2 cut(s) 245, 353
NdeII GATC 1 cut(s) 112
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 4 cut(s) 143, 205, 242, 273
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 2 cut(s) 408, 459
PctI GAATGC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 86, 290, 464
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 7 cut(s) 59, 64, 96, 129, 286, 361, 575
PleI GAGTC 2 cut(s) 4, 353
PluTI GGCGCC 1 cut(s) 275
PmaCI CACGTG 2 cut(s) 395, 412
PmlI CACGTG 2 cut(s) 395, 412
PpsI GAGTC 2 cut(s) 4, 353
Ppu21I YACGTR 2 cut(s) 395, 412
PpuMI RGGWCCY 2 cut(s) 204, 448
Psp5II RGGWCCY 2 cut(s) 204, 448
Psp6I CCWGG 3 cut(s) 35, 45, 293
PspCI CACGTG 2 cut(s) 395, 412
PspGI CCWGG 3 cut(s) 35, 45, 293
PspN4I GGNNCC 4 cut(s) 143, 205, 242, 273
PspPI GGNCC 2 cut(s) 204, 448
PspPPI RGGWCCY 2 cut(s) 204, 448
PstNI CAGNNNCTG 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 195
RsaI GTAC 2 cut(s) 5, 143
RsaNI GTAC 2 cut(s) 4, 142
SalI GTCGAC 2 cut(s) 347, 398
SaqAI TTAA 2 cut(s) 120, 563
SatI GCNGC 7 cut(s) 58, 63, 95, 128, 285, 360, 574
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 2 cut(s) 204, 448
SchI GAGTC 2 cut(s) 4, 354
ScrFI CCNGG 5 cut(s) 37, 47, 245, 295, 353
SduI GDGCHC 1 cut(s) 462
SfaNI GCATC 1 cut(s) 64
SfoI GGCGCC 1 cut(s) 273
SinI GGWCC 2 cut(s) 204, 448
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 2 cut(s) 103, 121
SspDI GGCGCC 1 cut(s) 271
StyD4I CCNGG 5 cut(s) 35, 45, 243, 293, 351
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 6 cut(s) 189, 224, 324, 397, 414, 591
TaqI TCGA 8 cut(s) 89, 199, 306, 348, 376, 387, 399, 462
TasI AATT 2 cut(s) 103, 121
TauI GCSGC 3 cut(s) 65, 362, 576
TfiI GAWTC 3 cut(s) 86, 290, 464
Tru1I TTAA 2 cut(s) 120, 563
Tru9I TTAA 2 cut(s) 120, 563
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 4 cut(s) 57, 94, 127, 284
Tsp45I GTSAC 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 204, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 2 cut(s) 348, 399
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.