Rh7BG243600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0019907
Physical Location & Seq
Forward (+)
21685507 .. 21685866
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG243600.1

Sequence Viewer

Length: 360 bp
ATGTCCTCCGACACGCCGTCATCAGCCACATATCGGTTAATCTCAGCCGTAGGGTTGAGTGAGAGGTTGACAGAAACAGTGAAGTGGTTCAATGACCAGAAGGGGTTTAGCTTCATCACCCGAAGAACGGCAGCGAGGATCTCTGCGTCCACCAGTCCTCAATCTAAACCGAAAGATTCAGGACTGTCGGCGACTGCATCTGACGGTGGCGGGCTCGCACTTTTCTCGGAACCAGGTCCAGCTGTCGAGGGGCCTCCAGAACGACAACGTATTGTCGTGAGAGGAGGAGTTAGCGGAGGAGCCGGGTCGCTGCTGAAGATGAGATCCTCAAAACCGACAACGCCGAAGACTAGATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.41

Weight (kDa)

10.66

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019907)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0482111
rosa_laevigata RLG00000026065 RLG00000037055
rosa_multiflora Rmu_sc0007408.1_g000004 Rmu_sc0011150.1_g000001
rosa_samantha Rh3AG246100 Rh7BG243600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 210, 294
AclWI GGATC 3 cut(s) 146, 318, 348
AcuI CTGAAG 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 33, 127
AgsI TTSAA 1 cut(s) 91
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 111, 242
AluI AGCT 2 cut(s) 111, 242
AlwI GGATC 3 cut(s) 146, 318, 348
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 131, 310
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 236, 251
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 143, 297
BceAI ACGGC 2 cut(s) 32, 144
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 1 cut(s) 304
BfaI CTAG 2 cut(s) 351, 358
BisI GCNGC 2 cut(s) 132, 311
BlsI GCNGC 2 cut(s) 133, 312
Bme1390I CCNGG 2 cut(s) 234, 304
Bme18I GGWCC 1 cut(s) 236
BmeRI GACNNNNNGTC 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 236, 251
BmiI GGNNCC 3 cut(s) 231, 252, 301
BmrFI CCNGG 2 cut(s) 234, 304
BmsI GCATC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 353
BpmI CTGGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 127
Bse1I ACTGG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 33, 127
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 3 cut(s) 297, 300, 312
BseXI GCAGC 2 cut(s) 143, 297
BshFI GGCC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 2 cut(s) 33, 127
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 138, 323, 353
BspACI CCGC 2 cut(s) 210, 294
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 231, 252, 301
BspPI GGATC 3 cut(s) 146, 318, 348
BsrI ACTGG 1 cut(s) 153
BssMI GATC 3 cut(s) 138, 323, 353
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 79, 186, 206
BstC8I GCNNGC 2 cut(s) 212, 216
BstDEI CTNAG 1 cut(s) 43
BstKTI GATC 3 cut(s) 141, 326, 356
BstMBI GATC 3 cut(s) 138, 323, 353
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 2 cut(s) 232, 302
BstV1I GCAGC 2 cut(s) 143, 297
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 3 cut(s) 138, 323, 353
BstYI RGATCY 3 cut(s) 138, 323, 353
BsuRI GGCC 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 212, 216
Cfr13I GGNCC 2 cut(s) 236, 251
CseI GACGC 1 cut(s) 135
CsiI ACCWGGT 1 cut(s) 232
CviJI RGCY 7 cut(s) 26, 47, 111, 214, 242, 253, 302
CviKI_1 RGCY 7 cut(s) 26, 47, 111, 214, 242, 253, 302
DdeI CTNAG 1 cut(s) 43
DpnI GATC 3 cut(s) 140, 325, 355
DpnII GATC 3 cut(s) 138, 323, 353
DriI GACNNNNNGTC 1 cut(s) 16
Eam1105I GACNNNNNGTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 216
FaiI YATR 1 cut(s) 31
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 132, 311
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 132, 311
FspBI CTAG 2 cut(s) 351, 358
GluI GCNGC 2 cut(s) 132, 311
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 303
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 69, 150
Hpy188I TCNGA 3 cut(s) 10, 202, 229
Hpy188III TCNNGA 3 cut(s) 180, 257, 277
Hpy8I GTNNAC 2 cut(s) 69, 150
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 3 cut(s) 79, 186, 206
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 268
Kzo9I GATC 3 cut(s) 138, 323, 353
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 8 cut(s) 110, 165, 166, 219, 246, 252, 270, 316
Lsp1109I GCAGC 2 cut(s) 143, 297
LweI GCATC 1 cut(s) 206
MabI ACCWGGT 1 cut(s) 232
MaeI CTAG 2 cut(s) 351, 358
MaeII ACGT 1 cut(s) 268
MalI GATC 3 cut(s) 140, 325, 355
MboI GATC 3 cut(s) 138, 323, 353
MboII GAAGA 3 cut(s) 135, 328, 358
MflI RGATCY 3 cut(s) 138, 323, 353
MhlI GDGCHC 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 33
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 234, 304
MvaI CCWGG 1 cut(s) 234
NciI CCSGG 1 cut(s) 304
NdeII GATC 3 cut(s) 138, 323, 353
NlaIV GGNNCC 3 cut(s) 231, 252, 301
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 133, 312
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 231, 252, 301
PspPI GGNCC 2 cut(s) 236, 251
PsuI RGATCY 3 cut(s) 138, 323, 353
PvuII CAGCTG 1 cut(s) 242
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 2 cut(s) 132, 311
Sau3AI GATC 3 cut(s) 138, 323, 353
Sau96I GGNCC 2 cut(s) 236, 251
ScrFI CCNGG 2 cut(s) 234, 304
SduI GDGCHC 1 cut(s) 216
SetI ASST 5 cut(s) 68, 113, 238, 244, 271
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 1 cut(s) 236
SsiI CCGC 2 cut(s) 210, 294
SspMI CTAG 2 cut(s) 351, 358
StyD4I CCNGG 2 cut(s) 232, 302
TaaI ACNGT 3 cut(s) 79, 186, 206
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 246
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 1 cut(s) 84
TseI GCWGC 2 cut(s) 131, 310
TspDTI ATGAA 1 cut(s) 103
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 2 cut(s) 351, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.