RLG00000037055

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019907
Physical Location & Seq
Reverse (-)
87943641 .. 87945583
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037055

Sequence Viewer

Length: 429 bp
ATGTTCTTGGCTTCCGGCGGCCCCCGCAGGTTCGGTTTTTTTCCGAAACCAGGTCCAGCTGTCGAGGGACCTCCGGAACAACAACGTATTGTCGTGAGAGGAGGAGCTGGGTCGCTGCTCCAAGGAGGAGGAGTGGGGCCCCGAGACTCGGCGGATTCCCTGGTCGGTTTTGATGTTGATGACAACGTCGTTTTGGTGGGGAGTCTGGGGCTGGCTGTTCTGGAGGATGTCTTCCGGGTCGACCCGATAGCGGCAGAGCAGGCAGGTGGAGTGGGCGTCGAGCCACGTGTCAAAGCACTCCATGTGGAAGGCATGCTTGTATTTCGGGAGGAGGTGGATGACCTAGGTGGGCTCGAATCGGGTGAGGCAGACGGCGGTGAAGCAGACGTTGTAGCAATGTCTGCTCTGGTTTTGGTACCTAGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

14.61

Weight (kDa)

4.34

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019907)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0482111
rosa_laevigata RLG00000026065 RLG00000037055
rosa_multiflora Rmu_sc0007408.1_g000004 Rmu_sc0011150.1_g000001
rosa_samantha Rh3AG246100 Rh7BG243600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 2 cut(s) 18, 254
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 73
AciI CCGC 5 cut(s) 18, 25, 152, 251, 375
AcvI CACGTG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 3 cut(s) 50, 148, 250
AflIII ACRYGT 1 cut(s) 286
AjnI CCWGG 2 cut(s) 49, 159
AluBI AGCT 2 cut(s) 59, 107
AluI AGCT 2 cut(s) 59, 107
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 141
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 2 cut(s) 19, 137
ApaI GGGCCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 115
Asp718I GGTACC 1 cut(s) 415
AspA2I CCTAGG 1 cut(s) 343
AspS9I GGNCC 5 cut(s) 20, 53, 68, 137, 138
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 374, 389
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 53, 68
AvrII CCTAGG 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 141, 354
BbrPI CACGTG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 417
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 2 cut(s) 51, 161
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 2 cut(s) 344, 420
BfuAI ACCTGC 2 cut(s) 18, 254
BisI GCNGC 3 cut(s) 19, 116, 252
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 3 cut(s) 20, 117, 253
Bme1390I CCNGG 3 cut(s) 51, 161, 236
Bme18I GGWCC 2 cut(s) 53, 68
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 5 cut(s) 20, 53, 68, 137, 138
BmiI GGNNCC 6 cut(s) 22, 69, 138, 139, 140, 417
BmrFI CCNGG 3 cut(s) 51, 161, 236
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 236
BsaAI YACGTR 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 121, 159, 343
BsaWI WCCGGW 1 cut(s) 73
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 261, 291
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 148, 250
Bse3DI GCAATG 1 cut(s) 402
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 2 cut(s) 51, 161
BseDI CCNNGG 3 cut(s) 121, 159, 343
BseGI GGATG 2 cut(s) 232, 343
BseLI CCNNNNNNNGG 3 cut(s) 50, 148, 250
BseMI GCAATG 1 cut(s) 402
BseRI GAGGAG 5 cut(s) 114, 117, 141, 144, 344
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 107
BshFI GGCC 2 cut(s) 21, 139
BshNI GGYRCC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 3 cut(s) 15, 74, 235
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 50, 148, 250
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 2 cut(s) 21, 139
BsoBI CYCGRG 1 cut(s) 141
Bsp120I GGGCCC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 141, 354
Bsp13I TCCGGA 1 cut(s) 73
BspACI CCGC 5 cut(s) 18, 25, 152, 251, 375
BspANI GGCC 2 cut(s) 21, 139
BspEI TCCGGA 1 cut(s) 73
BspLI GGNNCC 6 cut(s) 22, 69, 138, 139, 140, 417
BspMI ACCTGC 2 cut(s) 18, 254
BspT107I GGYRCC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 121, 159, 343
BssNI GRCGYC 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 121, 343
Bst2UI CCWGG 2 cut(s) 51, 161
BstACI GRCGYC 1 cut(s) 276
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 3 cut(s) 213, 261, 314
BstF5I GGATG 2 cut(s) 232, 343
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 24, 260, 401
BstNI CCWGG 2 cut(s) 51, 161
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 3 cut(s) 49, 159, 234
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 21, 139
BtsCI GGATG 2 cut(s) 232, 343
BveI ACCTGC 2 cut(s) 18, 254
Cac8I GCNNGC 3 cut(s) 213, 261, 314
Cfr13I GGNCC 5 cut(s) 20, 53, 68, 137, 138
CseI GACGC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 1 cut(s) 416
CviAII CATG 2 cut(s) 302, 313
CviJI RGCY 9 cut(s) 11, 21, 59, 107, 139, 211, 215, 283, 352
CviKI_1 RGCY 9 cut(s) 11, 21, 59, 107, 139, 211, 215, 283, 352
CviQI GTAC 1 cut(s) 416
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 121, 343
Eco24I GRGCYC 2 cut(s) 141, 354
Eco47I GGWCC 2 cut(s) 53, 68
Eco72I CACGTG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 141
EcoO109I RGGNCCY 3 cut(s) 68, 137, 138
EcoRII CCWGG 2 cut(s) 49, 159
EcoT14I CCWWGG 2 cut(s) 121, 343
EcoT38I GRGCYC 2 cut(s) 141, 354
ErhI CCWWGG 2 cut(s) 121, 343
FaeI CATG 2 cut(s) 305, 316
FaiI YATR 2 cut(s) 303, 314
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 81
FatI CATG 2 cut(s) 301, 312
FauI CCCGC 1 cut(s) 32
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 19, 116, 252
FokI GGATG 2 cut(s) 239, 350
FriOI GRGCYC 2 cut(s) 141, 354
Fsp4HI GCNGC 3 cut(s) 19, 116, 252
FspBI CTAG 2 cut(s) 344, 420
GluI GCNGC 3 cut(s) 19, 116, 252
GsaI CCCAGC 1 cut(s) 111
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 21, 139
HapII CCGG 3 cut(s) 15, 74, 235
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 2 cut(s) 305, 316
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 146, 155, 202, 356
HpaII CCGG 3 cut(s) 15, 74, 235
HphI GGTGA 2 cut(s) 374, 389
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 4 cut(s) 74, 94, 221, 326
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 2 cut(s) 191, 281
HpyAV CCTTC 1 cut(s) 302
HpyCH4IV ACGT 4 cut(s) 85, 186, 286, 387
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 260, 401
HpySE526I ACGT 4 cut(s) 85, 186, 286, 387
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 2 cut(s) 305, 316
Kpn2I TCCGGA 1 cut(s) 73
KpnI GGTACC 1 cut(s) 419
LmnI GCTCC 2 cut(s) 104, 123
Lsp1109I GCAGC 1 cut(s) 102
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 2 cut(s) 344, 420
MaeII ACGT 4 cut(s) 85, 186, 286, 387
MboII GAAGA 1 cut(s) 223
MhlI GDGCHC 2 cut(s) 141, 354
MlyI GAGTC 2 cut(s) 140, 211
MroI TCCGGA 1 cut(s) 73
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 15, 74, 235
MspR9I CCNGG 3 cut(s) 51, 161, 236
MvaI CCWGG 2 cut(s) 51, 161
MwoI GCNNNNNNNGC 3 cut(s) 24, 260, 401
NciI CCSGG 1 cut(s) 236
NlaIII CATG 2 cut(s) 305, 316
NlaIV GGNNCC 6 cut(s) 22, 69, 138, 139, 140, 417
NmeAIII GCCGAG 1 cut(s) 128
NspI RCATGY 1 cut(s) 316
PaeI GCATGC 1 cut(s) 316
PaqCI CACCTGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 155, 356
PflFI GACNNNGTC 1 cut(s) 185
PkrI GCNGC 3 cut(s) 20, 117, 253
PleI GAGTC 2 cut(s) 140, 210
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
PpsI GAGTC 2 cut(s) 140, 210
Ppu21I YACGTR 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 49, 159
PspCI CACGTG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 107
PspGI CCWGG 2 cut(s) 49, 159
PspN4I GGNNCC 6 cut(s) 22, 69, 138, 139, 140, 417
PspOMI GGGCCC 1 cut(s) 137
PspPI GGNCC 5 cut(s) 20, 53, 68, 137, 138
PspPPI RGGWCCY 1 cut(s) 68
PsyI GACNNNGTC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SalI GTCGAC 1 cut(s) 239
SatI GCNGC 3 cut(s) 19, 116, 252
Sau96I GGNCC 5 cut(s) 20, 53, 68, 137, 138
SchI GAGTC 2 cut(s) 140, 211
ScrFI CCNGG 3 cut(s) 51, 161, 236
SduI GDGCHC 2 cut(s) 141, 354
SexAI ACCWGGT 1 cut(s) 49
SinI GGWCC 2 cut(s) 53, 68
SphI GCATGC 1 cut(s) 316
SsiI CCGC 5 cut(s) 18, 25, 152, 251, 375
SspMI CTAG 2 cut(s) 344, 420
StyD4I CCNGG 3 cut(s) 49, 159, 234
StyI CCWWGG 2 cut(s) 121, 343
TaiI ACGT 4 cut(s) 88, 189, 289, 390
TaqI TCGA 4 cut(s) 63, 240, 279, 354
TauI GCSGC 2 cut(s) 21, 254
TfiI GAWTC 2 cut(s) 155, 356
TseI GCWGC 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 53, 68
XceI RCATGY 1 cut(s) 316
XmaJI CCTAGG 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 344, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.