RLG00000026771

Belongs to the eukaryotic ribosomal protein eS6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020686
Physical Location & Seq
Forward (+)
5779246 .. 5780619
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026771

Sequence Viewer

Length: 777 bp
ATGACCACATACCGGGGGAGAGCTGGGAGTGCTGGGAGTGCTGGAAGTGCTGGATCGACGTCGTCTAGAAACGCAGTTGACGAGCCATCGTGCAGGAAGGGCCTCTCTCTCTCTGTTGCGGCTACCAAGATGAAGTTCAACACCGTCAACCCCACCACCGGTTGCCAGAAGATGCTGGAAATCTATGACGACCACAAACTGCGGGTCTGTTTTGACAAAGCGGAGAAGCCCTTGGAGAAGAATTTAAGGGATATTTCTTTTAAGATTATGGGAGCTAGGCTGGGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTATTAGCCGTGGTCACGGAAGGAGGAATGGAGAGAAGAGGAGGAGAAAGTCTGTCCATGGGTGCATTGTCAGCCCTGATTTTTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTCACAATGATCTTCCTGTTTTGGCCGACACTGAGAAGCCTAGGATGAGAGGTCCAAAGAGGGCATCTAAGATCGGAAAGCTCTTCAATCTCTCAAAGGAGGATGATGTTCGAAATTTCTGGGTAGTGGGCATGCCTGGCGAGTATGGAAATTATGAATTCACCCATTGTGGTCAACTAGCTGCAGTACTTAATTACTTGGTTGCATCATTAGCTTTGCTGCTGCAAACTTGGTTGCAGGATCACGAAGAACCCTTCATTAACCATACCCTCAAATCAGTCAAGGCAACCAAGGACTTGGAATCTTGGATTCAAGACACAAAGAGAAGGTATGGGGCCCTGAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01521 ko03010 ko04066 ko04150 ko04151 ko04371 ko04714 ko04910 ko05205 map01521 map03010 map04066 map04150 map04151 map04371 map04714 map04910 map05205
Pfam Domains
Protein Families
Ribosomal_S6e

Protein Analysis

259

Amino Acids

28.66

Weight (kDa)

9.82

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6e PF01092 44 - 151 2.9e-12 Ribosomal protein S6e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020686)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026771 RLG00000026772 RLG00000026780
rosa_multiflora Rmu_co8236829.1_g000001 Rmu_sc0000556.1_g000003
rosa_rugosa Rorug07G0124500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 62
AciI CCGC 3 cut(s) 119, 202, 221
AclWI GGATC 2 cut(s) 61, 675
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 4 cut(s) 241, 541, 584, 771
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 615
AfiI CCNNNNNNNGG 2 cut(s) 12, 158
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 3 cut(s) 139, 514, 740
AjnI CCWGG 1 cut(s) 562
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AluBI AGCT 5 cut(s) 23, 275, 508, 608, 641
AluI AGCT 5 cut(s) 23, 275, 508, 608, 641
AlwI GGATC 2 cut(s) 61, 675
AoxI GGCC 3 cut(s) 100, 450, 762
ApaI GGGCCC 1 cut(s) 766
ApeKI GCWGC 3 cut(s) 608, 646, 649
ApoI RAATTY 4 cut(s) 241, 541, 584, 771
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AsiGI ACCGGT 1 cut(s) 158
AspA2I CCTAGG 1 cut(s) 467
AspS9I GGNCC 4 cut(s) 100, 479, 762, 763
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 580
AsuII TTCGAA 1 cut(s) 538
AvaII GGWCC 1 cut(s) 479
AvrII CCTAGG 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 766
BanII GRGCYC 1 cut(s) 766
BbvI GCAGC 3 cut(s) 595, 633, 636
BccI CCATC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 564
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 4 cut(s) 66, 276, 468, 605
BfmI CTRYAG 1 cut(s) 609
BisI GCNGC 4 cut(s) 120, 609, 647, 650
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 4 cut(s) 121, 610, 648, 651
BmcAI AGTACT 1 cut(s) 615
Bme1390I CCNGG 2 cut(s) 14, 564
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 4 cut(s) 100, 479, 762, 763
BmiI GGNNCC 3 cut(s) 297, 763, 764
BmrFI CCNGG 2 cut(s) 14, 564
BmsI GCATC 3 cut(s) 162, 500, 641
Bpu14I TTCGAA 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 6 cut(s) 13, 231, 322, 370, 467, 717
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 158
Bse118I RCCGGY 1 cut(s) 158
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 6 cut(s) 13, 231, 322, 370, 467, 717
BseGI GGATG 2 cut(s) 477, 535
BseLI CCNNNNNNNGG 2 cut(s) 12, 158
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 367, 370
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 3 cut(s) 595, 633, 636
BseYI CCCAGC 3 cut(s) 23, 32, 280
BsgI GTGCAG 1 cut(s) 112
BshFI GGCC 3 cut(s) 102, 452, 764
BshTI ACCGGT 1 cut(s) 158
BsiSI CCGG 2 cut(s) 13, 159
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 12, 158
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 3 cut(s) 102, 452, 764
Bsp119I TTCGAA 1 cut(s) 538
Bsp120I GGGCCC 1 cut(s) 762
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 4 cut(s) 53, 436, 498, 667
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 3 cut(s) 119, 202, 221
BspANI GGCC 3 cut(s) 102, 452, 764
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 297, 763, 764
BspMAI CTGCAG 1 cut(s) 613
BspPI GGATC 2 cut(s) 61, 675
BspQI GCTCTTC 1 cut(s) 515
BspT104I TTCGAA 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 6 cut(s) 13, 231, 322, 370, 467, 717
BssMI GATC 4 cut(s) 53, 436, 498, 667
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 4 cut(s) 231, 370, 467, 717
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 344, 515
BstACI GRCGYC 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 2 cut(s) 459, 495
BstDSI CCRYGG 2 cut(s) 322, 370
BstF5I GGATG 2 cut(s) 477, 535
BstKTI GATC 4 cut(s) 56, 439, 501, 670
BstMBI GATC 4 cut(s) 53, 436, 498, 667
BstMWI GCNNNNNNNGC 7 cut(s) 29, 38, 47, 99, 384, 564, 638
BstNI CCWGG 1 cut(s) 564
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 12, 562
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 1 cut(s) 766
BstV1I GCAGC 3 cut(s) 595, 633, 636
BstXI CCANNNNNNTGG 1 cut(s) 724
BsuRI GGCC 3 cut(s) 102, 452, 764
BtgI CCRYGG 2 cut(s) 322, 370
BtsCI GGATG 2 cut(s) 477, 535
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 1 cut(s) 560
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 4 cut(s) 100, 479, 762, 763
Csp6I GTAC 1 cut(s) 614
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 2 cut(s) 371, 559
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 2 cut(s) 459, 495
DpnI GATC 4 cut(s) 55, 438, 500, 669
DpnII GATC 4 cut(s) 53, 436, 498, 667
EaeI YGGCCR 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 344, 515
EarI CTCTTC 2 cut(s) 344, 515
Eco130I CCWWGG 4 cut(s) 231, 370, 467, 717
Eco24I GRGCYC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 479
EcoO109I RGGNCCY 3 cut(s) 100, 762, 763
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 4 cut(s) 231, 370, 467, 717
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 4 cut(s) 231, 370, 467, 717
FaeI CATG 2 cut(s) 374, 562
FaiI YATR 9 cut(s) 10, 186, 269, 372, 560, 573, 582, 693, 759
FaqI GGGAC 1 cut(s) 297
FatI CATG 2 cut(s) 370, 558
FauI CCCGC 1 cut(s) 195
Fnu4HI GCNGC 4 cut(s) 120, 609, 647, 650
FokI GGATG 2 cut(s) 484, 542
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 4 cut(s) 120, 609, 647, 650
FspBI CTAG 4 cut(s) 66, 276, 468, 605
GluI GCNGC 4 cut(s) 120, 609, 647, 650
GsaI CCCAGC 3 cut(s) 27, 36, 284
HaeIII GGCC 3 cut(s) 102, 452, 764
HapII CCGG 2 cut(s) 13, 159
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 2 cut(s) 374, 562
HincII GTYRAC 3 cut(s) 79, 148, 602
HindII GTYRAC 3 cut(s) 79, 148, 602
HinfI GANTC 2 cut(s) 728, 736
HpaII CCGG 2 cut(s) 13, 159
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 3 cut(s) 79, 148, 602
Hpy188I TCNGA 2 cut(s) 405, 503
Hpy188III TCNNGA 3 cut(s) 66, 671, 740
Hpy8I GTNNAC 3 cut(s) 79, 148, 602
Hpy99I CGWCG 2 cut(s) 61, 64
HpyAV CCTTC 5 cut(s) 91, 327, 418, 691, 747
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 6 cut(s) 93, 378, 611, 632, 652, 664
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 38, 47, 99, 384, 564, 638
HpyF3I CTNAG 2 cut(s) 459, 495
HpySE526I ACGT 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 2 cut(s) 374, 562
Kzo9I GATC 4 cut(s) 53, 436, 498, 667
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 1 cut(s) 272
Lsp1109I GCAGC 3 cut(s) 595, 633, 636
LweI GCATC 3 cut(s) 162, 500, 641
MaeI CTAG 4 cut(s) 66, 276, 468, 605
MaeII ACGT 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 326, 428
MalI GATC 4 cut(s) 55, 438, 500, 669
MboI GATC 4 cut(s) 53, 436, 498, 667
MboII GAAGA 7 cut(s) 181, 250, 361, 431, 433, 502, 686
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 6 cut(s) 241, 541, 577, 584, 619, 771
MnlI CCTC 8 cut(s) 113, 330, 345, 348, 470, 480, 520, 707
MseI TTAA 4 cut(s) 245, 261, 618, 687
MspI CCGG 2 cut(s) 13, 159
MspR9I CCNGG 2 cut(s) 14, 564
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 7 cut(s) 29, 38, 47, 99, 384, 564, 638
NciI CCSGG 1 cut(s) 14
NcoI CCATGG 1 cut(s) 370
NdeII GATC 4 cut(s) 53, 436, 498, 667
NlaIII CATG 2 cut(s) 374, 562
NlaIV GGNNCC 3 cut(s) 297, 763, 764
NmuCI GTSAC 2 cut(s) 326, 428
NspI RCATGY 1 cut(s) 562
NspV TTCGAA 1 cut(s) 538
PaeI GCATGC 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 515
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 2 cut(s) 728, 736
PflFI GACNNNGTC 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 4 cut(s) 121, 610, 648, 651
Psp6I CCWGG 1 cut(s) 562
PspFI CCCAGC 3 cut(s) 23, 32, 280
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 3 cut(s) 297, 763, 764
PspOMI GGGCCC 1 cut(s) 762
PspPI GGNCC 4 cut(s) 100, 479, 762, 763
PstI CTGCAG 1 cut(s) 613
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 4 cut(s) 245, 261, 618, 687
SatI GCNGC 4 cut(s) 120, 609, 647, 650
Sau3AI GATC 4 cut(s) 53, 436, 498, 667
Sau96I GGNCC 4 cut(s) 100, 479, 762, 763
ScaI AGTACT 1 cut(s) 615
ScrFI CCNGG 2 cut(s) 14, 564
SduI GDGCHC 1 cut(s) 766
SetI ASST 8 cut(s) 25, 62, 277, 481, 510, 610, 643, 758
SfaNI GCATC 3 cut(s) 162, 500, 641
SfcI CTRYAG 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 538
SinI GGWCC 1 cut(s) 479
SphI GCATGC 1 cut(s) 562
Sse9I AATT 6 cut(s) 241, 541, 577, 584, 619, 771
SsiI CCGC 3 cut(s) 119, 202, 221
SspMI CTAG 4 cut(s) 66, 276, 468, 605
StyD4I CCNGG 2 cut(s) 12, 562
StyI CCWWGG 4 cut(s) 231, 370, 467, 717
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 56, 538
TasI AATT 6 cut(s) 241, 541, 577, 584, 619, 771
TatI WGTACW 1 cut(s) 613
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 728, 736
Tru1I TTAA 4 cut(s) 245, 261, 618, 687
Tru9I TTAA 4 cut(s) 245, 261, 618, 687
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 2 cut(s) 326, 428
TseI GCWGC 3 cut(s) 608, 646, 649
Tsp45I GTSAC 2 cut(s) 326, 428
TspDTI ATGAA 4 cut(s) 146, 318, 597, 673
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 463
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 4 cut(s) 241, 541, 584, 771
XbaI TCTAGA 1 cut(s) 65
XceI RCATGY 1 cut(s) 562
XmaJI CCTAGG 1 cut(s) 467
XspI CTAG 4 cut(s) 66, 276, 468, 605
ZraI GACGTC 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.