Rmu_co8236829.1_g000001

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8236829.1
OG0020686
Physical Location & Seq
Reverse (-)
1 .. 632
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8236829.1_g000001.1.cds

Sequence Viewer

Length: 625 bp
atgccaggagtaccaccagtacattccttagatatgccgaaaccatttcttgaacgcaatgacaaggcttatgaatgcttcctagagaactcaacccactcgaccaaatcagctgggattatcgtaaacacttttgaatcacttgaacctagaactatcagagcactatcagatggactatgcttgcctgatgatattaccatgccgcccatctactgcataggaccattaatcatttctcagagaggtggtggtagtgatgatgtgcccgagtgtttgacgtggctggattcacagccaagtggaagtgtggtcttcctttgttttggaagcttaggattgtttacaaaggagcagttggaggagatagctgtggggttagagaggagtggccaaaggttcttgtgggttgtccgtaatccaccttctcataatcaaagcgtggctattgcaggccaagtggatccggatttggattatttgcttccagatggttttttggagagaaccaagcatagggggcttgtggtgaagtcatgggcgccacaagtagaagttcttaatcatgattcagtaggtggatttgtgtgtcactgtgggtggaactcaattttggaggcggtat

Protein Analysis

208

Amino Acids

22.81

Weight (kDa)

4.86

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020686)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026771 RLG00000026772 RLG00000026780
rosa_multiflora Rmu_co8236829.1_g000001 Rmu_sc0000556.1_g000003
rosa_rugosa Rorug07G0124500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 466
AciI CCGC 2 cut(s) 206, 620
AclWI GGATC 2 cut(s) 458, 471
AcoI YGGCCR 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 542
AfaI GTAC 2 cut(s) 12, 21
AfiI CCNNNNNNNGG 1 cut(s) 516
AgsI TTSAA 3 cut(s) 53, 137, 146
AjiI CACGTC 1 cut(s) 282
AjnI CCWGG 1 cut(s) 4
AjuI GAANNNNNNNTTGG 1 cut(s) 596
AluBI AGCT 3 cut(s) 113, 333, 371
AluI AGCT 3 cut(s) 113, 333, 371
Alw21I GWGCWC 1 cut(s) 166
AlwI GGATC 2 cut(s) 458, 471
Ama87I CYCGRG 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 2 cut(s) 391, 454
AseI ATTAAT 1 cut(s) 230
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 270
BalI TGGCCA 1 cut(s) 393
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 541
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 166
BccI CCATC 3 cut(s) 167, 218, 485
BciT130I CCWGG 1 cut(s) 6
BfaI CTAG 2 cut(s) 83, 150
BfoI RGCGCY 1 cut(s) 545
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 269
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 465, 543
BmrFI CCNGG 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 542
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 466
BseBI CCWGG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 377, 400
BseSI GKGCMC 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 2 cut(s) 393, 456
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 516
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 2 cut(s) 393, 456
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 166, 270
Bsp13I TCCGGA 1 cut(s) 466
Bsp143I GATC 1 cut(s) 463
BspACI CCGC 2 cut(s) 206, 620
BspANI GGCC 2 cut(s) 393, 456
BspCNI CTCAG 1 cut(s) 253
BspEI TCCGGA 1 cut(s) 466
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 465, 543
BspPI GGATC 2 cut(s) 458, 471
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 17
BssMI GATC 1 cut(s) 463
BssNI GRCGYC 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 596
BstACI GRCGYC 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 185, 454
BstDEI CTNAG 3 cut(s) 28, 240, 334
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 1 cut(s) 466
BstMBI GATC 1 cut(s) 463
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 1 cut(s) 6
BstSCI CCNGG 1 cut(s) 4
BstSLI GKGCMC 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 2 cut(s) 393, 456
BtrI CACGTC 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 2 cut(s) 185, 454
CciI TCATGA 1 cut(s) 565
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 11, 20
CviAII CATG 3 cut(s) 202, 537, 566
CviQI GTAC 2 cut(s) 11, 20
DdeI CTNAG 3 cut(s) 28, 240, 334
DinI GGCGCC 1 cut(s) 543
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 4
EgeI GGCGCC 1 cut(s) 543
EheI GGCGCC 1 cut(s) 543
FaeI CATG 3 cut(s) 205, 540, 569
FaiI YATR 9 cut(s) 35, 72, 181, 203, 221, 432, 516, 538, 567
FatI CATG 3 cut(s) 201, 536, 565
Fnu4HI GCNGC 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 83, 150
GlaI GCGC 1 cut(s) 543
GluI GCNGC 1 cut(s) 206
GsaI CCCAGC 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 2 cut(s) 393, 456
HapII CCGG 1 cut(s) 467
HhaI GCGC 1 cut(s) 544
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 3 cut(s) 205, 540, 569
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 3 cut(s) 137, 290, 569
HpaII CCGG 1 cut(s) 467
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 2 cut(s) 127, 345
Hpy188I TCNGA 3 cut(s) 161, 172, 243
Hpy188III TCNNGA 4 cut(s) 50, 467, 488, 566
Hpy8I GTNNAC 2 cut(s) 127, 345
HpyAV CCTTC 1 cut(s) 435
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 219, 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 3 cut(s) 28, 240, 334
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 3 cut(s) 205, 540, 569
HspAI GCGC 1 cut(s) 542
KasI GGCGCC 1 cut(s) 541
Kpn2I TCCGGA 1 cut(s) 466
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 8 cut(s) 18, 30, 99, 201, 272, 438, 480, 501
MaeI CTAG 2 cut(s) 83, 150
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 590
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 1 cut(s) 307
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 166, 270
MlsI TGGCCA 1 cut(s) 393
MluCI AATT 1 cut(s) 609
MluNI TGGCCA 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 542
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 4 cut(s) 239, 355, 378, 610
Mox20I TGGCCA 1 cut(s) 393
MroI TCCGGA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 393
MseI TTAA 2 cut(s) 230, 561
Msp20I TGGCCA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 520
NarI GGCGCC 1 cut(s) 542
NdeII GATC 1 cut(s) 463
NlaIII CATG 3 cut(s) 205, 540, 569
NlaIV GGNNCC 2 cut(s) 465, 543
NmuCI GTSAC 1 cut(s) 590
PagI TCATGA 1 cut(s) 565
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 3 cut(s) 137, 290, 569
PkrI GCNGC 1 cut(s) 207
PluTI GGCGCC 1 cut(s) 545
PshBI ATTAAT 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 4
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 465, 543
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 463
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 12, 21
RsaNI GTAC 2 cut(s) 11, 20
SaqAI TTAA 2 cut(s) 230, 561
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 463
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 2 cut(s) 166, 270
SetI ASST 9 cut(s) 115, 151, 250, 284, 335, 373, 401, 427, 580
SfoI GGCGCC 1 cut(s) 543
SinI GGWCC 1 cut(s) 224
Sse9I AATT 1 cut(s) 609
SsiI CCGC 2 cut(s) 206, 620
SspDI GGCGCC 1 cut(s) 541
SspMI CTAG 2 cut(s) 83, 150
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 101
TasI AATT 1 cut(s) 609
TatI WGTACW 1 cut(s) 19
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 3 cut(s) 137, 290, 569
Tru1I TTAA 2 cut(s) 230, 561
Tru9I TTAA 2 cut(s) 230, 561
TscAI CASTG 1 cut(s) 599
TseFI GTSAC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 224
VspI ATTAAT 1 cut(s) 230
XspI CTAG 2 cut(s) 83, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.