RLG00000026780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020686
Physical Location & Seq
Forward (+)
6017635 .. 6019632
1998 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026780

Sequence Viewer

Length: 408 bp
ATGTTAAGGGACGTAGGCAGAGAGTTTTCGGAAGGATTAAGTCTTGAGGGGGGAGGAGTTAAGGAGGAGGGCGCTGCTAGTGGGGGAGGTTCAAGCGGTGAGGATGTCGAGGAGGGTGGACTTTCCGGCACTGCTAGGGCAAACAACGGTGAGGATTTGGGAGGGGTATGCGGTGAGATTGACGTCGCGGAGGATTTAGGTGGGGGAAGAAGGGAGGTGCATGGCTTGAAGAGGAAGTTAAGTGGAGCGAAGGTGGTGGTTGCGGTGGTGGACTTGGTGTATGATATTGAGGAGGCTGATCACGAAGAACCCTTCATTAACCATACCCTCAAATCAGTCAAGGCAACCAAGGACTTGGAATCTTGGATTCAAGACACAAAGAGAAGGTATGGGGCCCTGAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.21

Weight (kDa)

4.77

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020686)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026771 RLG00000026772 RLG00000026780
rosa_multiflora Rmu_co8236829.1_g000001 Rmu_sc0000556.1_g000003
rosa_rugosa Rorug07G0124500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 96, 171, 188, 263
AcsI RAATTY 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 183
AgsI TTSAA 3 cut(s) 93, 229, 371
AoxI GGCC 1 cut(s) 393
ApaI GGGCCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 402
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 393, 394
AsuHPI GGTGA 3 cut(s) 110, 161, 185
BaeGI GKGCMC 1 cut(s) 397
BanII GRGCYC 1 cut(s) 397
BbvI GCAGC 1 cut(s) 61
BclI TGATCA 1 cut(s) 298
BfaI CTAG 2 cut(s) 78, 135
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 393, 394
BmiI GGNNCC 2 cut(s) 394, 395
BpuEI CTTGAG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 109
BseRI GAGGAG 4 cut(s) 69, 80, 125, 305
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 1 cut(s) 395
Bsp120I GGGCCC 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 4 cut(s) 96, 171, 188, 263
BspANI GGCC 1 cut(s) 395
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 394, 395
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 1 cut(s) 298
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 224
BstACI GRCGYC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstSLI GKGCMC 1 cut(s) 397
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 355
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 393, 394
CviAII CATG 1 cut(s) 221
CviJI RGCY 3 cut(s) 225, 296, 395
CviKI_1 RGCY 3 cut(s) 225, 296, 395
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 397
EcoO109I RGGNCCY 2 cut(s) 393, 394
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 224
FaiI YATR 5 cut(s) 169, 222, 282, 324, 390
FaqI GGGAC 1 cut(s) 23
FatI CATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 78, 135
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 75
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 395
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 224
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 359, 367
HpaII CCGG 1 cut(s) 126
HphI GGTGA 3 cut(s) 110, 161, 185
Hpy166II GTNNAC 2 cut(s) 119, 271
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 44, 302, 371
Hpy8I GTNNAC 2 cut(s) 119, 271
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 26, 204, 244, 322, 378
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 2 cut(s) 12, 183
HpyCH4V TGCA 1 cut(s) 220
HpySE526I ACGT 2 cut(s) 12, 183
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 224
HspAI GCGC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 1 cut(s) 139
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 2 cut(s) 78, 135
MaeII ACGT 2 cut(s) 12, 183
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 3 cut(s) 219, 241, 317
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 1 cut(s) 402
MseI TTAA 5 cut(s) 5, 38, 60, 239, 318
MspI CCGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 188
NdeII GATC 1 cut(s) 298
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 394, 395
PfeI GAWTC 2 cut(s) 359, 367
PkrI GCNGC 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 394, 395
PspOMI GGGCCC 1 cut(s) 393
PspPI GGNCC 2 cut(s) 393, 394
SaqAI TTAA 5 cut(s) 5, 38, 60, 239, 318
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 2 cut(s) 393, 394
SduI GDGCHC 1 cut(s) 397
SetI ASST 7 cut(s) 15, 91, 186, 202, 219, 255, 389
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 402
SsiI CCGC 4 cut(s) 96, 171, 188, 263
SspMI CTAG 2 cut(s) 78, 135
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 2 cut(s) 15, 186
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 402
TfiI GAWTC 2 cut(s) 359, 367
Tru1I TTAA 5 cut(s) 5, 38, 60, 239, 318
Tru9I TTAA 5 cut(s) 5, 38, 60, 239, 318
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 304
TspRI CASTG 1 cut(s) 136
XapI RAATTY 1 cut(s) 402
XspI CTAG 2 cut(s) 78, 135
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.