RLG00000026772

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020686
Physical Location & Seq
Forward (+)
5783687 .. 5784661
975 bp
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UTR
Exon/CDS
Intron
RLM00000026772

Sequence Viewer

Length: 627 bp
ATGACACCGCCCCATATATTGTCTCCGTCTCTGCCAGTACTACTCCCTCCATCATCTCCCAGCTATCTCTCTCCCTCCCTCCCTCCTAGAGTCCTAGTGATGATGTACCCGAGTGAGCAGTTGGGAGAAATAGCTGTGGGGTTAGAGAGGACTGGCCTAAGGTTCTTGTGGGTGGTCCGTAACCCACCTTCTCATAATCAAAGTGTGGCTATTGGGGTCCATCCTGACCAGGATTTGGATTTTTTGCTTCCAGATGGTTTCTTGGGTAGGACCAAGGATAGGGGTCTTCAGTCGAGTATATCCAACCAGGTCTTTGAGGTTATACTGGACGTAGGCAGAGAGTTTTCGGAAGGATTAAGTGTTGAGGGGGGAGGAGTTAAGGAGGAGGGCGCCGCTAGTGGGGGAGGTTCAGGCGGTGAGGATGTCGAGGAGGGTGGACTTTCCGGCACTGCTAGGGCAAACAACGGTGAGGATTTGGGAGGGGTATGCGGTGAGATTGACGTCGCGGAGGATTTAGGTGGGGGAAGAAGGGAGGTGCATGGCTTGAAGAGGAAGTTAAGTGGAGCGAAGGTGGTGGTTGCGGTGGTGGACTTGGTGTATGATATTGAGGAGGCTGTTAGTTCATAG

Protein Analysis

209

Amino Acids

21.75

Weight (kDa)

4.6

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020686)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026771 RLG00000026772 RLG00000026780
rosa_multiflora Rmu_co8236829.1_g000001 Rmu_sc0000556.1_g000003
rosa_rugosa Rorug07G0124500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 389
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 506
AciI CCGC 6 cut(s) 8, 393, 414, 489, 506, 581
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 2 cut(s) 390, 501
AfaI GTAC 2 cut(s) 39, 107
AfiI CCNNNNNNNGG 3 cut(s) 235, 279, 399
AgsI TTSAA 1 cut(s) 547
AjnI CCWGG 2 cut(s) 228, 306
AluBI AGCT 2 cut(s) 63, 134
AluI AGCT 2 cut(s) 63, 134
Alw26I GTCTC 2 cut(s) 27, 33
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 175, 217, 270
AsuHPI GGTGA 3 cut(s) 428, 479, 503
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 3 cut(s) 175, 217, 270
AxyI CCTNAGG 1 cut(s) 158
BanI GGYRCC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
BbsI GAAGAC 1 cut(s) 278
BccI CCATC 3 cut(s) 58, 228, 248
BciT130I CCWGG 2 cut(s) 230, 308
BcoDI GTCTC 2 cut(s) 27, 33
BfaI CTAG 4 cut(s) 87, 95, 396, 453
BfoI RGCGCY 1 cut(s) 393
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 230, 308
Bme18I GGWCC 3 cut(s) 175, 217, 270
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 175, 217, 270
BmiI GGNNCC 2 cut(s) 218, 391
BmrFI CCNGG 2 cut(s) 230, 308
BpiI GAAGAC 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 390, 501
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 279, 399
Bse1I ACTGG 3 cut(s) 35, 157, 330
Bse21I CCTNAGG 1 cut(s) 158
BseBI CCWGG 2 cut(s) 230, 308
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 220, 427
BseLI CCNNNNNNNGG 3 cut(s) 235, 279, 399
BseNI ACTGG 3 cut(s) 35, 157, 330
BseRI GAGGAG 4 cut(s) 387, 398, 443, 623
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 235, 279, 399
BsmAI GTCTC 2 cut(s) 27, 33
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 109
BspACI CCGC 6 cut(s) 8, 393, 414, 489, 506, 581
BspANI GGCC 1 cut(s) 156
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 218, 391
BspT107I GGYRCC 1 cut(s) 389
BsrI ACTGG 3 cut(s) 35, 157, 330
BssECI CCNNGG 1 cut(s) 273
BssNI GRCGYC 2 cut(s) 390, 501
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 230, 308
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 542
BstACI GRCGYC 2 cut(s) 390, 501
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 220, 427
BstFNI CGCG 1 cut(s) 506
BstH2I RGCGCY 1 cut(s) 393
BstHHI GCGC 1 cut(s) 392
BstMAI GTCTC 2 cut(s) 27, 33
BstNI CCWGG 2 cut(s) 230, 308
BstSCI CCNGG 2 cut(s) 228, 306
BstUI CGCG 1 cut(s) 506
BstV2I GAAGAC 1 cut(s) 278
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 2 cut(s) 220, 427
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 447
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 175, 217, 270
CsiI ACCWGGT 1 cut(s) 306
Csp6I GTAC 2 cut(s) 38, 106
CviAII CATG 1 cut(s) 539
CviJI RGCY 6 cut(s) 63, 134, 156, 209, 543, 614
CviKI_1 RGCY 6 cut(s) 63, 134, 156, 209, 543, 614
CviQI GTAC 2 cut(s) 38, 106
DdeI CTNAG 1 cut(s) 158
DinI GGCGCC 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 273
Eco47I GGWCC 3 cut(s) 175, 217, 270
Eco57I CTGAAG 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 228, 306
EcoT14I CCWWGG 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 1 cut(s) 542
FaiI YATR 9 cut(s) 15, 17, 195, 299, 323, 487, 540, 600, 625
FatI CATG 1 cut(s) 538
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 2 cut(s) 207, 434
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 4 cut(s) 87, 95, 396, 453
GlaI GCGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 393
GsaI CCCAGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 393
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 444
HhaI GCGC 1 cut(s) 392
Hin1I GRCGYC 2 cut(s) 390, 501
Hin1II CATG 1 cut(s) 542
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 444
HphI GGTGA 3 cut(s) 428, 479, 503
Hpy166II GTNNAC 2 cut(s) 437, 589
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 2 cut(s) 224, 251
Hpy8I GTNNAC 2 cut(s) 437, 589
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 4 cut(s) 198, 344, 522, 562
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 2 cut(s) 330, 501
HpyCH4V TGCA 1 cut(s) 538
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 2 cut(s) 330, 501
Hsp92I GRCGYC 2 cut(s) 390, 501
Hsp92II CATG 1 cut(s) 542
HspAI GCGC 1 cut(s) 390
KasI GGCGCC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 563
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 4 cut(s) 87, 95, 396, 453
MaeII ACGT 2 cut(s) 330, 501
MaeIII GTNAC 1 cut(s) 179
MboII GAAGA 3 cut(s) 278, 537, 559
Mly113I GGCGCC 1 cut(s) 390
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 327
MseI TTAA 3 cut(s) 356, 378, 557
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 2 cut(s) 230, 308
MvaI CCWGG 2 cut(s) 230, 308
MvnI CGCG 1 cut(s) 506
NarI GGCGCC 1 cut(s) 390
NlaIII CATG 1 cut(s) 542
NlaIV GGNNCC 2 cut(s) 218, 391
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 98
PluTI GGCGCC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 98
Psp6I CCWGG 2 cut(s) 228, 306
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 2 cut(s) 228, 306
PspN4I GGNNCC 2 cut(s) 218, 391
PspPI GGNCC 3 cut(s) 175, 217, 270
RsaI GTAC 2 cut(s) 39, 107
RsaNI GTAC 2 cut(s) 38, 106
SaqAI TTAA 3 cut(s) 356, 378, 557
SatI GCNGC 1 cut(s) 393
Sau96I GGNCC 3 cut(s) 175, 217, 270
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 230, 308
SexAI ACCWGGT 1 cut(s) 306
SfoI GGCGCC 1 cut(s) 391
SinI GGWCC 3 cut(s) 175, 217, 270
SsiI CCGC 6 cut(s) 8, 393, 414, 489, 506, 581
SspDI GGCGCC 1 cut(s) 389
SspMI CTAG 4 cut(s) 87, 95, 396, 453
StyD4I CCNGG 2 cut(s) 228, 306
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 2 cut(s) 333, 504
TaqI TCGA 2 cut(s) 293, 426
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 395
Tru1I TTAA 3 cut(s) 356, 378, 557
Tru9I TTAA 3 cut(s) 356, 378, 557
TscAI CASTG 1 cut(s) 454
TspDTI ATGAA 1 cut(s) 612
TspGWI ACGGA 2 cut(s) 15, 167
TspRI CASTG 1 cut(s) 454
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 175, 217, 270
XspI CTAG 4 cut(s) 87, 95, 396, 453
ZraI GACGTC 1 cut(s) 502
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.