Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000556.1

Orthogroup ID

OG0020686

Physical Location & Seq

Genomic Coordinates Reverse (-)

7450 .. 7851

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000556.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgacaccgccccatgcatatattgcctccgtctctgccactactccctccatcatctcccaaccatctctctccctctctcctagtgatgatgtgcctgagtgtttgacatggctggactcgcagccaagtggaagtgtggtgttcctctgttttggaagcttaggattgtttacaaaggagcagttgggagaaatagctgtggggttagagaggagtggccgaaggttcttgtgggtggtccgtaacccaccttctcataatcaaagtgtgcctgaccaggatttggattttttgcttccggatggtttcttgggtaggaccaaggataggggtcttcagtcgagtatatttgagattttgagtatatccaaccaggtcttgaggttaaactgtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0080043 GO:0080044 GO:0080045 GO:0080046

KEGG Pathways

Metabolic & Signaling

ko00942 map00942

Pfam Domains

Protein Families

UDPGT

Protein Analysis

133

Amino Acids

14.53

Weight (kDa)

4.94

Isoelectric Point (pI)

65.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020686)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000026771 RLG00000026772 RLG00000026780
rosa_multiflora	Rmu_co8236829.1_g000001 Rmu_sc0000556.1_g000003
rosa_rugosa	Rorug07G0124500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	1 cut(s)	8
AcoI	YGGCCR	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	286, 330
AjnI	CCWGG	2 cut(s)	279, 375
AluBI	AGCT	2 cut(s)	162, 200
AluI	AGCT	2 cut(s)	162, 200
Alw26I	GTCTC	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	241, 321
AvaII	GGWCC	2 cut(s)	241, 321
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbsI	GAAGAC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	3 cut(s)	59, 73, 299
BciT130I	CCWGG	2 cut(s)	281, 377
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	281, 377
Bme18I	GGWCC	2 cut(s)	241, 321
BmgT120I	GGNCC	2 cut(s)	241, 321
BmrFI	CCNGG	2 cut(s)	281, 377
BpiI	GAAGAC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 330
BseAI	TCCGGA	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	281, 377
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	286, 330
BseMII	CTCAG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	286, 330
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	301
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	91
BspEI	TCCGGA	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	281, 377
Bst4CI	ACNGT	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	99, 163
BstF5I	GGATG	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 121
BstNI	CCWGG	2 cut(s)	281, 377
BstSCI	CCNGG	2 cut(s)	279, 375
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	241, 321
CsiI	ACCWGGT	1 cut(s)	375
CviAII	CATG	2 cut(s)	14, 111
CviJI	RGCY	5 cut(s)	115, 127, 162, 200, 222
CviKI_1	RGCY	5 cut(s)	115, 127, 162, 200, 222
DdeI	CTNAG	2 cut(s)	99, 163
EaeI	YGGCCR	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	241, 321
Eco57I	CTGAAG	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	279, 375
EcoT14I	CCWWGG	1 cut(s)	324
EcoT22I	ATGCAT	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	2 cut(s)	17, 114
FaiI	YATR	7 cut(s)	15, 19, 21, 112, 261, 350, 368
FatI	CATG	2 cut(s)	13, 110
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	2 cut(s)	17, 114
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188III	TCNNGA	2 cut(s)	302, 382
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	2 cut(s)	219, 264
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 121
HpyF3I	CTNAG	2 cut(s)	99, 163
Hsp92II	CATG	2 cut(s)	17, 114
Kpn2I	TCCGGA	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	8 cut(s)	101, 111, 266, 288, 293, 315, 362, 389
Lsp1109I	GCAGC	1 cut(s)	136
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	329
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	6 cut(s)	37, 58, 86, 158, 207, 378
Mph1103I	ATGCAT	1 cut(s)	19
MroI	TCCGGA	1 cut(s)	301
MseI	TTAA	1 cut(s)	389
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	281, 377
MvaI	CCWGG	2 cut(s)	281, 377
MwoI	GCNNNNNNNGC	2 cut(s)	23, 121
NlaIII	CATG	2 cut(s)	17, 114
NsiI	ATGCAT	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	279, 375
PspGI	CCWGG	2 cut(s)	279, 375
PspPI	GGNCC	2 cut(s)	241, 321
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	125
Sau96I	GGNCC	2 cut(s)	241, 321
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	281, 377
SetI	ASST	6 cut(s)	164, 202, 230, 256, 381, 389
SexAI	ACCWGGT	1 cut(s)	375
SinI	GGWCC	2 cut(s)	241, 321
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	279, 375
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	344
TasI	AATT	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TseI	GCWGC	1 cut(s)	124
TspGWI	ACGGA	2 cut(s)	19, 233
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	241, 321
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.