Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006177

Physical Location & Seq

Genomic Coordinates Forward (+)

15402963 .. 15407349

Gene Structure 4387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3216 bp

ATGGAACCCCGATTTGGGAGGACCAAACAGAAATCCGACGTGGCAGCCGTGCTCCGCAAATCATGGTACCGTCTCCGCCTCTCCGTCCGTCACCCCTCCCGCGCCGCCACGTGGGACGCCATCGTCCTCACGGCCGCCAGCCCCGAGCAAGCCCAGCTCTACCACTGGCAGCTCCACCGCGCCAAGCGTATGGGCCGCATCGCCGCCTCCACCGTCACCCTCGCCGTCCCCGATCCCCTCGGCCAGCGCATAGGCTCCGGCGCCGCCACTCTCCACGCCATTCGCGCCCTCGCCCTCCATTACCGCAAATTAAGGGACCCAAACTCCCAGGTGGAGGGAAGTGGAGATGGTGAAGTGGAGGATGATGATCTTGTGGAAATGGTTGGCTACATTGCGAAAAGGCATATATTGTTGCTTCATGCTGGAGGGGATTCTAAAAGGGTACCGTGGGCGAATCCCATGGGAAAAGTTTTCCTGCCACTTCCTTATCTGGCAGCTGATGACCCTGATGGCCCGGTCCCGCTGCTTTTCGATCACATACTATCAATTGCTTCTTGTGCAAGACAAGCTTTTAAAAATGAAGGTGGAATGTTTACTATGACTGGAGACGTACTTCCATGTTTTGATGCCTCCAATTTGGTGCTTCCAGAGGACACATCCTGTATCATCACAGTTCCTATCACCCTCGATATTGCATCTAACCACGGTGTTGTTGTGGCATTTAAGAGTGGAAATGTTGAAAATAATGTCAATCTAGTTGATAACCTCTTACAAAAACCTAGTGTAGAGGAACTTGTTAAGCACAATGCAATTCTTGACGATGGCAGAGCACTTCTTGATACTGGATTAATAGCAGTTAGAGGTAAAGGGTGGGAGGAGCTTGTTACACTTGCTTGTTCCTGCCAGCCAATGATTTCAGAACTTCTGAAGACCAAAAAGGAGATGAGTTTATATGAAGATCTTGTAGCAGCTTGGGTACCTGCAAAGCATGACTGGTTGCGGCTACGCCCCTCCGGTGAAGAACTTGTCAGCAGATTAGGAAAGCAGAAGATGTACAGCTACTGTGCTTATGATTTGTCGTTCTTACATTTTGGAACCTCCAGTGAAGTTTTGGATCATCTGAGTGGAGCTGGTTCGGTACTGGTCAGTCGAAGACACCTTTGTTCTATCCCGGCAACCACTCTATCTGACATAGCAGCATCTGCTGTTATTCTTGCTAGCAAAATTGCACCTGCCGTCTCAATTGGGGAAGATTCTCTTATATATGACTCAACCATTTCCAGTGGGATACAAATTGGTTCCTTGTCCATAGTTGTTGGTATTAATGTTCCAGACATAAGTGGTAATGCAGCAGAAAATCCATTTAGGTTCATACTTCCGGATCGTCATTGTCTTTGGGAGGTTCCCTTGGTAGGATGCACTGGAAAAGTAATAGTGTATTGTGGCCTTCATGATAACCCCAAAATTTCACTCTCTAAAGATGGAACTTTTTGTGGGAAGCCCTGGAGGAAGGTCTTGTATGATTTAGGAATTGAAGAAAATGATCTTTGGAGCTCAACTGGTAATCAGGAAATGTGCTTATGGAATGCAAAGATATTCCCTATTCTTTCTTATTTTGAGATGCTAAGTGTGGCAACTTGGTTGATGGGCTTGAGTGATAAAAAATCTGAGGAGTTGCTTTTGTTGTGGAGAAGTTCATCTCGTGTCAGCTTGGAGGAGTTGCATAGATCAATTGATTTTTCAAAAATGTGTACAGGTTCCATTAATCATCAAGCAGATCTTGCGGCTGCAGTCGCTAAATCTTGCATTAATTATGGCATGCTCGGATGCAACTTGTATCGTTTGTGTGAAGAAATTCTGCAAATGGAAAATGTAGGAGTCAAGATATGTAATGATTTTCTAGATCTTTGTCCCACACTCTTGGAGCAGAACAGTAAGATTCTCCCCAAAAGCCGTGCATACCAGGTTCAAGTTGATCTTCTTCGAGCATGCAGCAATGAAACAGCAGCATGTAAATTGGAGAACAAAGTTTGGGCTGCAGTTGCTGATGAAACTGCTTCAGCAGTAAAATATGGTTTCAAAGAACATCTCTCAGATGCCCACATACATATACCTCCTCCAGCTTGTAAGAACAATGATTTTAATGGCTCTGTGGATGATTCTTTCTATCCTAGAAGGGTGAAGGTTGAATTGCCAGTTCGTGTTGATTTTGTTGGGGGTTGGAGTGACACTCCTCCATGGAGCTTGGAGCGTGCTGGTTGTGTCCTGAATATGGCAATAAGTTTGGAAGGTTCTCTTCCAATTGGCACCATCATAGAGACAACAAAAGCTACTGGTGTCTTTGTCAGTGATGATGCTGGAAATGAGTTGCACATTGAAGACTTAACCTCAATTGCTACTCCATTTGACCACAGTGATCCATTTCGGCTTGTTAAATCTGCACTGCTTGTGACTGGCATAATTCATGAAAATGTTCTGGCATCAGTGGGCTTGAAGATTACAACTTGGGCCCATGTTCCTCGTGGCAGCGGCTTGGGGACTTCTAGCATCTTGGCAGCTGCTGTTGTGAAAGCACTTCTGCAGATTACTGACGGTGATGAAAGTAATGAAAATGTTGCACGACTTGTTCTGGTATTAGAACAGCTTATGGGGACAGGTGGTGGCTGGCAGGATCAAATTGGGGGTCTCTACCCTGGCATTAAGTTTACTGCAAGTTTTCCTGGAATTCCGCTGCGACTACAAGTCATCCCACTTTTGGCTTCTCCTCCATTAGTTTCAGAGTTGCAGCAACGCTTGCTTGTGGTATTTACTGGTCAAGTTCGACTAGCACACCAAGTCTTGCAAAAGGTGGTAATCCGATACCTTCGAAGGGACAACCTTCTCGTATCCAGCATCAAGCGCCTCGCCGAACTGGCTAAGATCGGGAGAGAAGCTCTGATGAATTGCGACATAGACGACCTTGGGGACATAATGCTAGAGGCATGGAGGTTACATCAAGAACTCGACCCTTACTGCAGTAACGAGTTTGTCGATAGACTCTTTGAATTCGCACACCCCTATTGCTCCGGCTACAAGCTCGTCGGTGCTGGTGGTGGAGGCTTTGCCTTGTTACTCGCCAAGGATGCCGAGCATGCAAAGAAACTAACACATTTGCTGGAAAAAGATTCGAACTTTGACGTCAAAGTATACAACTGGAACATCTCCTTAGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009225 GO:0009226 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042350 GO:0042352 GO:0043094 GO:0043173 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046368 GO:0046483 GO:0047341 GO:0050201 GO:0055086 GO:0070568 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 map00051 map00520 map01100

Pfam Domains

Protein Families

Fucokinase GHMP_kinases_C GHMP_kinases_N

Protein Analysis

1072

Amino Acids

117.41

Weight (kDa)

5.91

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fucose_pyrophosphorylase	PF07959	131 - 537	8.7e-114	Fucose pyrophosphorylase domain
GHMP_kinases_N	PF00288	826 - 896	1.8e-11	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	977 - 1048	2.7e-06	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220
fragaria_vesca	FvH4_7g17030 FvH4_7g17030 FvH4_7g17030
malus_domestica	MD07G1153800.v1.1
prunus_persica	Prupe.2G192700_v2.0.a1 Prupe.2G192700_v2.0.a1 Prupe.2G192700_v2.0.a1
pyrus_communis	pycom07g15160
rosa_chinensis	RchiOBHm_Chr1g0360431
rosa_laevigata	RLG00000027808
rosa_multiflora	Rmu_ssc0000368.1_g000084
rosa_roxburghii	Rroxscaffold_4G00296110
rosa_rugosa	Rorug01G0277000 Rorug01G0277100
rosa_samantha	Rh1AG290900 Rh1BG256000 Rh1CG273700 Rh1DG285800
rosa_wichuraiana	Rw1G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1240
AasI	GACNNNNNNGTC	1 cut(s)	122
AatII	GACGTC	1 cut(s)	3180
Acc36I	ACCTGC	2 cut(s)	988, 1240
Acc65I	GGTACC	3 cut(s)	66, 442, 976
AccB1I	GGYRCC	5 cut(s)	66, 260, 442, 976, 2306
AccI	GTMKAC	1 cut(s)	3186
AccII	CGCG	3 cut(s)	102, 180, 285
AccIII	TCCGGA	1 cut(s)	1378
AclWI	GGATC	5 cut(s)	227, 1122, 1389, 2411, 2679
AcoI	YGGCCR	2 cut(s)	132, 241
AcsI	RAATTY	4 cut(s)	1464, 1854, 2724, 3044
AcuI	CTGAAG	2 cut(s)	947, 2043
AcvI	CACGTG	1 cut(s)	111
AcyI	GRCGYC	3 cut(s)	117, 261, 3177
AfaI	GTAC	7 cut(s)	68, 444, 612, 978, 1055, 1140, 1753
AfiI	CCNNNNNNNGG	8 cut(s)	14, 15, 111, 334, 1412, 2272, 2755, 2869
AgsI	TTSAA	9 cut(s)	740, 1535, 1743, 1970, 2080, 2189, 2378, 2494, 3044
AhdI	GACNNNNNGTC	1 cut(s)	2741
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	5 cut(s)	327, 1502, 1962, 2692, 2719
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
Alw21I	GWGCWC	3 cut(s)	54, 832, 1556
Alw26I	GTCTC	5 cut(s)	77, 600, 1243, 2312, 2690
AlwI	GGATC	5 cut(s)	227, 1122, 1389, 2411, 2679
AlwNI	CAGNNNCTG	4 cut(s)	1062, 1202, 2045, 2561
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	1378
AoxI	GGCC	6 cut(s)	132, 193, 241, 511, 1444, 2508
ApaI	GGGCCC	1 cut(s)	2512
ApoI	RAATTY	4 cut(s)	1464, 1854, 2724, 3044
ArsI	GACNNNNNNTTYG	2 cut(s)	2668, 2700
AseI	ATTAAT	4 cut(s)	848, 1323, 1764, 1809
Asp700I	GAANNNNTTC	2 cut(s)	1854, 2472
Asp718I	GGTACC	3 cut(s)	66, 442, 976
AspLEI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2901
AspS9I	GGNCC	7 cut(s)	21, 193, 316, 512, 517, 2508, 2509
AsuC2I	CCSGG	2 cut(s)	515, 1172
AsuHPI	GGTGA	7 cut(s)	83, 208, 362, 673, 1028, 2191, 2606
AsuII	TTCGAA	2 cut(s)	2866, 3167
AsuNHI	GCTAGC	1 cut(s)	1217
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	21, 316, 517
BaeGI	GKGCMC	1 cut(s)	2512
BanI	GGYRCC	5 cut(s)	66, 260, 442, 976, 2306
BanII	GRGCYC	2 cut(s)	1556, 2512
BauI	CACGAG	2 cut(s)	1701, 2520
BbrPI	CACGTG	1 cut(s)	111
BbsI	GAAGAC	3 cut(s)	935, 1159, 2385
Bbv12I	GWGCWC	3 cut(s)	54, 832, 1556
BccI	CCATC	7 cut(s)	128, 341, 503, 815, 1475, 1639, 2318
BceAI	ACGGC	5 cut(s)	32, 147, 209, 1220, 1938
BciT130I	CCWGG	5 cut(s)	329, 1504, 1964, 2694, 2721
BciVI	GTATCC	2 cut(s)	1281, 2896
BcnI	CCSGG	2 cut(s)	515, 1172
BcoDI	GTCTC	5 cut(s)	77, 600, 1243, 2312, 2690
BfaI	CTAG	8 cut(s)	755, 780, 1218, 1901, 2172, 2544, 2825, 2975
BfmI	CTRYAG	4 cut(s)	1788, 2037, 2579, 3013
BfoI	RGCGCY	2 cut(s)	264, 2902
BfuAI	ACCTGC	2 cut(s)	988, 1240
BfuI	GTATCC	2 cut(s)	1281, 2896
BglI	GCCNNNNNGGC	1 cut(s)	2912
BglII	AGATCT	3 cut(s)	958, 1777, 1903
Bme1390I	CCNGG	7 cut(s)	329, 515, 1172, 1504, 1964, 2694, 2721
Bme18I	GGWCC	3 cut(s)	21, 316, 517
BmeRI	GACNNNNNGTC	1 cut(s)	2741
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	7 cut(s)	21, 193, 316, 512, 517, 2508, 2509
BmrFI	CCNGG	7 cut(s)	329, 515, 1172, 1504, 1964, 2694, 2721
BmtI	GCTAGC	1 cut(s)	1221
BpiI	GAAGAC	3 cut(s)	935, 1159, 2385
BplI	GAGNNNNNCTC	4 cut(s)	2215, 2247, 2917, 2949
BpmI	CTGGAG	5 cut(s)	444, 624, 1084, 1525, 2103
Bpu14I	TTCGAA	2 cut(s)	2866, 3167
BpuEI	CTTGAG	1 cut(s)	1672
BpuMI	CCSGG	2 cut(s)	515, 1172
BsaAI	YACGTR	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	3 cut(s)	117, 261, 3177
BsaI	GGTCTC	1 cut(s)	2690
BsaWI	WCCGGW	2 cut(s)	1013, 1378
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	8 cut(s)	14, 15, 111, 334, 1412, 2272, 2755, 2869
Bse3DI	GCAATG	2 cut(s)	390, 2002
Bse8I	GATNNNNATC	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	1378
BseBI	CCWGG	5 cut(s)	329, 1504, 1964, 2694, 2721
BseGI	GGATG	7 cut(s)	367, 656, 1421, 1832, 2161, 2745, 3127
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	8 cut(s)	14, 15, 111, 334, 1412, 2272, 2755, 2869
BseMI	GCAATG	2 cut(s)	390, 2002
BseMII	CTCAG	3 cut(s)	1112, 1659, 2106
BseRI	GAGGAG	6 cut(s)	890, 1685, 1730, 2106, 2223, 2754
BseSI	GKGCMC	1 cut(s)	2512
BseX3I	CGGCCG	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	2424
Bsh1236I	CGCG	3 cut(s)	102, 180, 285
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	6 cut(s)	134, 195, 243, 513, 1446, 2510
BshNI	GGYRCC	5 cut(s)	66, 260, 442, 976, 2306
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	3 cut(s)	54, 832, 1556
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	6 cut(s)	258, 515, 1014, 1172, 1379, 3066
BslFI	GGGAC	9 cut(s)	128, 212, 329, 503, 1896, 2551, 2665, 2885, 2978
BslI	CCNNNNNNNGG	8 cut(s)	14, 15, 111, 334, 1412, 2272, 2755, 2869
BsmAI	GTCTC	5 cut(s)	77, 600, 1243, 2312, 2690
BsmBI	CGTCTC	3 cut(s)	77, 600, 1243
BsmFI	GGGAC	9 cut(s)	128, 212, 329, 503, 1896, 2551, 2665, 2885, 2978
BsmI	GAATGC	1 cut(s)	1591
BsnI	GGCC	6 cut(s)	134, 195, 243, 513, 1446, 2510
Bso31I	GGTCTC	1 cut(s)	2690
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	2 cut(s)	2866, 3167
Bsp120I	GGGCCC	1 cut(s)	2508
Bsp1286I	GDGCHC	4 cut(s)	54, 832, 1556, 2512
Bsp13I	TCCGGA	1 cut(s)	1378
Bsp1407I	TGTACA	2 cut(s)	1053, 1751
Bsp19I	CCATGG	2 cut(s)	459, 2237
BspANI	GGCC	6 cut(s)	134, 195, 243, 513, 1446, 2510
BspCNI	CTCAG	3 cut(s)	1113, 1660, 2105
BspEI	TCCGGA	1 cut(s)	1378
BspFNI	CGCG	3 cut(s)	102, 180, 285
BspHI	TCATGA	2 cut(s)	1450, 2464
BspMAI	CTGCAG	4 cut(s)	1792, 2041, 2583, 3017
BspMI	ACCTGC	2 cut(s)	988, 1240
BspOI	GCTAGC	1 cut(s)	1221
BspPI	GGATC	5 cut(s)	227, 1122, 1389, 2411, 2679
BspT104I	TTCGAA	2 cut(s)	2866, 3167
BspT107I	GGYRCC	5 cut(s)	66, 260, 442, 976, 2306
BspTNI	GGTCTC	1 cut(s)	2690
BsrDI	GCAATG	2 cut(s)	390, 2002
BsrGI	TGTACA	2 cut(s)	1053, 1751
BssNAI	GTATAC	1 cut(s)	3187
BssNI	GRCGYC	3 cut(s)	117, 261, 3177
BssSI	CACGAG	2 cut(s)	1701, 2520
BssT1I	CCWWGG	5 cut(s)	459, 1407, 2237, 2959, 3117
Bst1107I	GTATAC	1 cut(s)	3187
Bst2BI	CACGAG	2 cut(s)	1701, 2520
Bst2UI	CCWGG	5 cut(s)	329, 1504, 1964, 2694, 2721
Bst4CI	ACNGT	9 cut(s)	71, 214, 447, 673, 707, 1064, 1934, 2414, 2594
Bst6I	CTCTTC	1 cut(s)	2301
BstACI	GRCGYC	3 cut(s)	117, 261, 3177
BstAPI	GCANNNNNTGC	3 cut(s)	1202, 1781, 2794
BstAUI	TGTACA	2 cut(s)	1053, 1751
BstBAI	YACGTR	1 cut(s)	111
BstBI	TTCGAA	2 cut(s)	2866, 3167
BstDEI	CTNAG	6 cut(s)	1121, 1625, 1668, 2092, 2916, 3205
BstDSI	CCRYGG	4 cut(s)	446, 459, 703, 2237
BstF5I	GGATG	7 cut(s)	367, 656, 1421, 1832, 2161, 2745, 3127
BstFNI	CGCG	3 cut(s)	102, 180, 285
BstH2I	RGCGCY	2 cut(s)	264, 2902
BstHHI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2901
BstMAI	GTCTC	5 cut(s)	77, 600, 1243, 2312, 2690
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	5 cut(s)	329, 1504, 1964, 2694, 2721
BstNSI	RCATGY	4 cut(s)	1822, 1992, 2013, 3134
BstSCI	CCNGG	7 cut(s)	327, 513, 1170, 1502, 1962, 2692, 2719
BstSFI	CTRYAG	4 cut(s)	1788, 2037, 2579, 3013
BstSLI	GKGCMC	1 cut(s)	2512
BstUI	CGCG	3 cut(s)	102, 180, 285
BstV2I	GAAGAC	3 cut(s)	935, 1159, 2385
BstX2I	RGATCY	3 cut(s)	958, 1777, 1903
BstXI	CCANNNNNNTGG	2 cut(s)	190, 1921
BstYI	RGATCY	3 cut(s)	958, 1777, 1903
BstZ17I	GTATAC	1 cut(s)	3187
BstZI	CGGCCG	1 cut(s)	132
BsuI	GTATCC	2 cut(s)	1281, 2896
BsuRI	GGCC	6 cut(s)	134, 195, 243, 513, 1446, 2510
BtgI	CCRYGG	4 cut(s)	446, 459, 703, 2237
BtgZI	GCGATG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	7 cut(s)	367, 656, 1421, 1832, 2161, 2745, 3127
BtsI	GCAGTG	1 cut(s)	2441
BtsIMutI	CAGTG	8 cut(s)	163, 1108, 1288, 1419, 2353, 2419, 2441, 2490
BveI	ACCTGC	2 cut(s)	988, 1240
CaiI	CAGNNNCTG	4 cut(s)	1062, 1202, 2045, 2561
CciI	TCATGA	2 cut(s)	1450, 2464
CfoI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2901
Cfr13I	GGNCC	7 cut(s)	21, 193, 316, 512, 517, 2508, 2509
CseI	GACGC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	1962
Csp6I	GTAC	7 cut(s)	67, 443, 611, 977, 1054, 1139, 1752
CviQI	GTAC	7 cut(s)	67, 443, 611, 977, 1054, 1139, 1752
DdeI	CTNAG	6 cut(s)	1121, 1625, 1668, 2092, 2916, 3205
DinI	GGCGCC	1 cut(s)	262
DraI	TTTAAA	1 cut(s)	574
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	1 cut(s)	2741
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	2 cut(s)	132, 241
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	2301
Eam1105I	GACNNNNNGTC	1 cut(s)	2741
EarI	CTCTTC	1 cut(s)	2301
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	1 cut(s)	1554
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	5 cut(s)	459, 1407, 2237, 2959, 3117
Eco24I	GRGCYC	2 cut(s)	1556, 2512
Eco31I	GGTCTC	1 cut(s)	2690
Eco47I	GGWCC	3 cut(s)	21, 316, 517
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	1554
Eco57I	CTGAAG	2 cut(s)	947, 2043
Eco72I	CACGTG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	1554
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRI	GAATTC	2 cut(s)	2724, 3044
EcoRII	CCWGG	5 cut(s)	327, 1502, 1962, 2692, 2719
EcoT14I	CCWWGG	5 cut(s)	459, 1407, 2237, 2959, 3117
EcoT38I	GRGCYC	2 cut(s)	1556, 2512
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	5 cut(s)	459, 1407, 2237, 2959, 3117
Esp3I	CGTCTC	3 cut(s)	77, 600, 1243
FaqI	GGGAC	9 cut(s)	128, 212, 329, 503, 1896, 2551, 2665, 2885, 2978
FauI	CCCGC	2 cut(s)	107, 528
FblI	GTMKAC	1 cut(s)	3186
FokI	GGATG	7 cut(s)	374, 643, 1428, 1839, 2168, 2732, 3134
FriOI	GRGCYC	2 cut(s)	1556, 2512
FspBI	CTAG	8 cut(s)	755, 780, 1218, 1901, 2172, 2544, 2825, 2975
GlaI	GCGC	6 cut(s)	103, 181, 248, 262, 286, 2900
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	5 cut(s)	444, 624, 1084, 1525, 2103
HaeII	RGCGCY	2 cut(s)	264, 2902
HaeIII	GGCC	6 cut(s)	134, 195, 243, 513, 1446, 2510
HapII	CCGG	6 cut(s)	258, 515, 1014, 1172, 1379, 3066
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2901
Hin1I	GRCGYC	3 cut(s)	117, 261, 3177
Hin6I	GCGC	6 cut(s)	102, 180, 247, 261, 285, 2899
HinP1I	GCGC	6 cut(s)	102, 180, 247, 261, 285, 2899
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	9 cut(s)	431, 454, 1253, 1268, 1878, 1939, 2159, 3036, 3164
HpaII	CCGG	6 cut(s)	258, 515, 1014, 1172, 1379, 3066
HphI	GGTGA	7 cut(s)	83, 208, 362, 673, 1028, 2191, 2606
Hpy166II	GTNNAC	4 cut(s)	594, 1752, 2706, 3187
Hpy8I	GTNNAC	4 cut(s)	594, 1752, 2706, 3187
Hpy99I	CGWCG	2 cut(s)	41, 3083
HpyAV	CCTTC	9 cut(s)	575, 1457, 1504, 2169, 2176, 2282, 2862, 2873, 2888
HpyCH4III	ACNGT	9 cut(s)	71, 214, 447, 673, 707, 1064, 1934, 2414, 2594
HpyCH4IV	ACGT	4 cut(s)	39, 110, 609, 3177
HpyF3I	CTNAG	6 cut(s)	1121, 1625, 1668, 2092, 2916, 3205
HpySE526I	ACGT	4 cut(s)	39, 110, 609, 3177
Hsp92I	GRCGYC	3 cut(s)	117, 261, 3177
HspAI	GCGC	6 cut(s)	102, 180, 247, 261, 285, 2899
KasI	GGCGCC	1 cut(s)	260
KflI	GGGWCCC	1 cut(s)	316
Kpn2I	TCCGGA	1 cut(s)	1378
KpnI	GGTACC	3 cut(s)	70, 446, 980
MabI	ACCWGGT	1 cut(s)	1962
MaeI	CTAG	8 cut(s)	755, 780, 1218, 1901, 2172, 2544, 2825, 2975
MaeII	ACGT	4 cut(s)	39, 110, 609, 3177
MaeIII	GTNAC	8 cut(s)	89, 214, 883, 2225, 2449, 2988, 3017, 3108
MfeI	CAATTG	5 cut(s)	546, 1242, 1731, 2301, 2391
MflI	RGATCY	3 cut(s)	958, 1777, 1903
MhlI	GDGCHC	4 cut(s)	54, 832, 1556, 2512
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	1262, 1887, 3030
MmeI	TCCRAC	2 cut(s)	60, 2201
MroI	TCCGGA	1 cut(s)	1378
MroXI	GAANNNNTTC	2 cut(s)	1854, 2472
MslI	CAYNNNNRTG	2 cut(s)	1122, 2469
MspA1I	CMGCKG	5 cut(s)	497, 523, 2529, 2558, 2731
MspI	CCGG	6 cut(s)	258, 515, 1014, 1172, 1379, 3066
MspR9I	CCNGG	7 cut(s)	329, 515, 1172, 1504, 1964, 2694, 2721
MunI	CAATTG	5 cut(s)	546, 1242, 1731, 2301, 2391
Mva1269I	GAATGC	1 cut(s)	1591
MvaI	CCWGG	5 cut(s)	329, 1504, 1964, 2694, 2721
MvnI	CGCG	3 cut(s)	102, 180, 285
NarI	GGCGCC	1 cut(s)	261
NciI	CCSGG	2 cut(s)	515, 1172
NcoI	CCATGG	2 cut(s)	459, 2237
NheI	GCTAGC	1 cut(s)	1217
NmeAIII	GCCGAG	2 cut(s)	219, 3151
NmuCI	GTSAC	4 cut(s)	89, 214, 2225, 2449
NspI	RCATGY	4 cut(s)	1822, 1992, 2013, 3134
NspV	TTCGAA	2 cut(s)	2866, 3167
PaeI	GCATGC	3 cut(s)	1822, 1992, 3134
PagI	TCATGA	2 cut(s)	1450, 2464
PaqCI	CACCTGC	1 cut(s)	1240
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 228, 3027
PctI	GAATGC	1 cut(s)	1591
PdmI	GAANNNNTTC	2 cut(s)	1854, 2472
PfeI	GAWTC	6 cut(s)	431, 454, 1253, 1939, 2159, 3164
PfoI	TCCNGGA	1 cut(s)	2719
PleI	GAGTC	3 cut(s)	1262, 1886, 3030
PluTI	GGCGCC	1 cut(s)	264
PmaCI	CACGTG	1 cut(s)	111
PmlI	CACGTG	1 cut(s)	111
PpsI	GAGTC	3 cut(s)	1262, 1886, 3030
Ppu21I	YACGTR	1 cut(s)	111
PpuMI	RGGWCCY	1 cut(s)	316
PshBI	ATTAAT	4 cut(s)	848, 1323, 1764, 1809
Psp124BI	GAGCTC	1 cut(s)	1556
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	5 cut(s)	327, 1502, 1962, 2692, 2719
PspCI	CACGTG	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	5 cut(s)	327, 1502, 1962, 2692, 2719
PspOMI	GGGCCC	1 cut(s)	2508
PspPI	GGNCC	7 cut(s)	21, 193, 316, 512, 517, 2508, 2509
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	4 cut(s)	1792, 2041, 2583, 3017
PstNI	CAGNNNCTG	4 cut(s)	1062, 1202, 2045, 2561
PsuI	RGATCY	3 cut(s)	958, 1777, 1903
PvuII	CAGCTG	2 cut(s)	497, 2558
RsaI	GTAC	7 cut(s)	68, 444, 612, 978, 1055, 1140, 1753
RsaNI	GTAC	7 cut(s)	67, 443, 611, 977, 1054, 1139, 1752
RseI	CAYNNNNRTG	2 cut(s)	1122, 2469
SacI	GAGCTC	1 cut(s)	1556
Sau96I	GGNCC	7 cut(s)	21, 193, 316, 512, 517, 2508, 2509
SchI	GAGTC	3 cut(s)	1262, 1887, 3030
ScrFI	CCNGG	7 cut(s)	329, 515, 1172, 1504, 1964, 2694, 2721
SduI	GDGCHC	4 cut(s)	54, 832, 1556, 2512
SexAI	ACCWGGT	1 cut(s)	1962
SfcI	CTRYAG	4 cut(s)	1788, 2037, 2579, 3013
SfoI	GGCGCC	1 cut(s)	262
SfuI	TTCGAA	2 cut(s)	2866, 3167
SinI	GGWCC	3 cut(s)	21, 316, 517
SmiMI	CAYNNNNRTG	2 cut(s)	1122, 2469
SmlI	CTYRAG	1 cut(s)	1651
SmoI	CTYRAG	1 cut(s)	1651
SphI	GCATGC	3 cut(s)	1822, 1992, 3134
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	8 cut(s)	755, 780, 1218, 1901, 2172, 2544, 2825, 2975
SstI	GAGCTC	1 cut(s)	1556
StyD4I	CCNGG	7 cut(s)	327, 513, 1170, 1502, 1962, 2692, 2719
StyI	CCWWGG	5 cut(s)	459, 1407, 2237, 2959, 3117
TaaI	ACNGT	9 cut(s)	71, 214, 447, 673, 707, 1064, 1934, 2414, 2594
TaiI	ACGT	4 cut(s)	42, 113, 612, 3180
TaqI	TCGA	9 cut(s)	531, 687, 1150, 1984, 2821, 2866, 3003, 3030, 3167
TatI	WGTACW	2 cut(s)	1053, 1751
TauI	GCSGC	8 cut(s)	107, 137, 198, 206, 266, 1003, 1787, 2532
TfiI	GAWTC	6 cut(s)	431, 454, 1253, 1939, 2159, 3164
TscAI	CASTG	8 cut(s)	170, 1108, 1288, 1426, 2353, 2419, 2448, 2490
TseFI	GTSAC	4 cut(s)	89, 214, 2225, 2449
Tsp45I	GTSAC	4 cut(s)	89, 214, 2225, 2449
TspGWI	ACGGA	2 cut(s)	73, 77
TspRI	CASTG	8 cut(s)	170, 1108, 1288, 1426, 2353, 2419, 2448, 2490
VpaK11BI	GGWCC	3 cut(s)	21, 316, 517
VspI	ATTAAT	4 cut(s)	848, 1323, 1764, 1809
XapI	RAATTY	4 cut(s)	1464, 1854, 2724, 3044
XbaI	TCTAGA	1 cut(s)	1900
XceI	RCATGY	4 cut(s)	1822, 1992, 2013, 3134
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1108, 2519
XmiI	GTMKAC	1 cut(s)	3186
XmnI	GAANNNNTTC	2 cut(s)	1854, 2472
XspI	CTAG	8 cut(s)	755, 780, 1218, 1901, 2172, 2544, 2825, 2975
ZraI	GACGTC	1 cut(s)	3178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.