Rorug01G0277000

Bifunctional fucokinase fucose

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
38935504 .. 38935809
306 bp
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UTR
Exon/CDS
Intron
Rorug01G0277000.1

Sequence Viewer

Length: 249 bp
ATGTCTGGCAACACCCAGAACTACCTCACTCTTAATAGCTTTGAGGTAGGTGGTGACGGGGATGGTCGATCAGAATGTGACGGCAAGTACCATAATGACAACACTCCAGTTGTGGCATTATCCACTGGATGCATGTGTGGTGAGCATAGTGGTGGATATGAGTGTGACTCTACAAAAGGTTGTGAAGCAGACCATGATTACCAGCCTTCTTGTCCTAACACCATTGTGGATCCGTCCAAGGCTGTCTAG

Protein Analysis

82

Amino Acids

8.64

Weight (kDa)

4.29

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 2 - 45 8.2e-11 Kiwellin-1
KWL1 PF24300 54 - 82 3.6e-06 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 224, 237
AfaI GTAC 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AlwI GGATC 2 cut(s) 224, 237
AsuHPI GGTGA 2 cut(s) 65, 152
BamHI GGATCC 1 cut(s) 229
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 97
BfaI CTAG 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpmI CTGGAG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 237
Bse1I ACTGG 2 cut(s) 107, 130
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 67, 134
BseNI ACTGG 2 cut(s) 107, 130
Bsp143I GATC 2 cut(s) 68, 229
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 224, 237
BsrI ACTGG 2 cut(s) 107, 130
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 2 cut(s) 68, 229
BssT1I CCWWGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 67, 134
BstKTI GATC 2 cut(s) 71, 232
BstMBI GATC 2 cut(s) 68, 229
BstNSI RCATGY 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtsCI GGATG 2 cut(s) 67, 134
BtsIMutI CAGTG 1 cut(s) 123
Csp6I GTAC 1 cut(s) 88
CviAII CATG 2 cut(s) 133, 194
CviJI RGCY 3 cut(s) 39, 205, 242
CviKI_1 RGCY 3 cut(s) 39, 205, 242
CviQI GTAC 1 cut(s) 88
DpnI GATC 2 cut(s) 70, 231
DpnII GATC 2 cut(s) 68, 229
Eco130I CCWWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 136, 197
FaiI YATR 5 cut(s) 93, 134, 147, 159, 195
FatI CATG 2 cut(s) 132, 193
FokI GGATG 2 cut(s) 74, 141
FspBI CTAG 1 cut(s) 247
GsuI CTGGAG 1 cut(s) 90
Hin1II CATG 2 cut(s) 136, 197
HinfI GANTC 1 cut(s) 167
HphI GGTGA 2 cut(s) 65, 152
Hpy188I TCNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 132
Hsp92II CATG 2 cut(s) 136, 197
Kzo9I GATC 2 cut(s) 68, 229
LpnPI CCDG 4 cut(s) 29, 111, 120, 215
LweI GCATC 1 cut(s) 119
MaeI CTAG 1 cut(s) 247
MaeIII GTNAC 3 cut(s) 53, 77, 164
MalI GATC 2 cut(s) 70, 231
MboI GATC 2 cut(s) 68, 229
MflI RGATCY 1 cut(s) 229
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 35, 37
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 1 cut(s) 33
MslI CAYNNNNRTG 2 cut(s) 150, 224
NdeII GATC 2 cut(s) 68, 229
NlaIII CATG 2 cut(s) 136, 197
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 3 cut(s) 53, 77, 164
NsiI ATGCAT 1 cut(s) 134
NspI RCATGY 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 224
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 2 cut(s) 150, 224
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 2 cut(s) 68, 229
SchI GAGTC 1 cut(s) 161
SetI ASST 5 cut(s) 27, 41, 48, 52, 181
SfaNI GCATC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 150, 224
SspMI CTAG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 237
TaqI TCGA 1 cut(s) 67
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 3 cut(s) 53, 77, 164
Tsp45I GTSAC 3 cut(s) 53, 77, 164
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 130
XceI RCATGY 1 cut(s) 136
XspI CTAG 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.