Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006177

Physical Location & Seq

Genomic Coordinates Forward (+)

16185869 .. 16190505

Gene Structure 4637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3168 bp

ATGGAACCCCGATTTGCTCGGACCAAACAGAAATCCGACGTGGCAGCCGTCCTCCGCAAATCATGGTACCGTCTCCGCCTCTCCGTCCGTCACCCCTCCCGCGCCGCCACGTGGGACGCCATCGTCCTCACGGCCGCCAGCCCCGAGCAAGCCCAGCTCTACCACTGGCAGCTCCACCGCGCCAAGCGTATGGGCCGCATCGCCCCCTCCACCGTCACCCTCGCCGTCCCCGATCCCCTCGGCCAGCGCATCGGCTCCGGCGCCGCCACTCTCCACGCCATTCGCGCCCTCGCCCTCCATTACCGCAAATTAAGGGACCCAAACTCCCAGGCGGAGCCAAGTGGAGATGGTGAAGTGGAGGATGATGATGTTGTGGAAATGGTTAGCTACATTGCGAAAAGGCATATATTGTTGCTTCATGCTGGAGGGGATTCTAAAAGGGTACCGTGGGCGAATCCCATGGGGAAAGTCTTCCTGCCACTTCCTTATCTGGCAGCTGAGGACCCTGATGGGCCGGTCCCGCTGCTTTTCGATCACATACTTGCAATTGCTTCTTGTGCAAGACAAGCTTTTAAAAATGAAGGTGGAATGTTTACTATGACTGGAGACGTACTTCCATGTTTTGATGCCTCCAATTTGGTGCTTCCAGAGGACACATCCTGTATCATCACAGTTCCTATCACCCTCGATATTGCGTCTAACCACGGTGTTGTTGTGGCATCTAAGAGCGGAAATGTTGAAAATAATGTCAATCTAGTTGGTAACCTCTTACAAAAACCTAGTGTAGAGGAACTTGTTAAGCACAATGCAATTCTTGACGATGGCAGAGCACTTCTTGATACTGGATTAATAGCGGTTAGAGGTAAAGGGTGGGAGGAGCTTGTTACACTTGCGTGTTCCTGCCAGCCAATGATTTCAGAACTTCTGAAGACCAAAAAGGAGATGAGTTTATATGAAGATCTTGTAGCAGCTTGGGTACCTGCAAAGCATGACTGGTTGCGGCTTCTTGATTTAACTGCAGATGATTTGTCGTTCTTACATTTTGGAACCTCCAGTGAAGTTTTGGATCATCTGAGTGGAGCTGGTTCGGGACTGGTCAGTCGAAGACACCTTTGTTCTATCCCGGCAACCACTCTATCTGACATAGCAGCATCTGCTGTTATTCTTGCTAGCAAAATTGCACCTGCCGTCTCAATTGGGGAAGATTCTCTTATATATGACTCAACCATTTCCAGTGGGATACAAATTGGTTCCTTGTCCATAGTTGTTGGTATTAATGTTCCAGACATAAGTGGTAATGCAGCAGAAAATCCATTTAGGTTCATACTTCCGGATCGTCATTGTCTTTGGGAGGTTCCCTTAGTAGGATGCACTGGAAAAGTAATAGTGTATTGTGGCCTTCATGACAACCCCAAAATTTCACTCTCTAAAGACGGAACTTTTTGTGGGAAGCCCTGGAGGAAGGTCTTGTATGATTTAGGAATTGAAGAAAATGATCTTTGGAGCTCAACTGGTAATCAGGAAAAGTGTTTATGGAATGCAAAGATATTCCCTATTCTTTCTTATTTTGAAATGCTAAGTGTGGCAACTTGGTTGATGGGCTTGAGTGATAAAAAATCTGAGGAGTTGCTTTTGTTGTGGAGAAGTTCATCTCGTGTCAGCTTGGAGGAGTTGCATAGATCAATTGATTTTTCAAAAATGTGTACAGGTTCCATTAATCATCAAGCAGATCTTGCGGCTGCAGTCGCTAAATCTTGCATTAATTATGGCATGCTTGGATGCAACTTGTATCGTTTGTGTGAAGAAATTCTGCAAATGGAAAATGTAGGAGTCAAGATATGTAATGATTTTCTAGATCTTTGTCCCACACTCTTGGAGCAGAACAGTAAGATTCTTCCCAAAAGCCGTGCATACCAGGTTCAAGTTGATCTTCTTCGAGCATGCAGCAACGAAACAGCAGCATGTAAATTGGAGAACAAAGTTTGGGCTGCAGTTGCTGATGAAACTGCTTCAGCAGTAAAATATGGTTTCAAAGAACATCTCTCAGATGCCCCCATAAATATACCTCCTCCAGCTTGTAAGAACAATGATTTTAATGGCTCTGTGGATGATTTTTTCAATCCTAGAAGGGTGAAGGTTGAATTGCCAGTTCGTGTTGATTTTGTTGGGGGTTGGAGTGACACTCCTCCATGGAGCTTGGAGCGTGCTGGTTGTGTCTTGAATATGGCAATAAGTTTGGAAGGTTCTCTTCCAATTGGCACCATCATAGAGACAACAAAAGCTACTGGTGTCTTTGTCAGTGATGATGCTGGAAATGAGTTGCACATTGAAGACTTAACCTCAATTGCTACTCCATTTGACCACAGTGATCCATTTCGGCTTGTTAAATCTGCACTGCTTGTGACTGGCATAATTCATGAAAATGTTCTGGCATCAGTGGGCTTGAAGATTACAACTTGGGCCCATGTTCCTCGTGGCAGCGGCTTGGGGACTTCTAGCATCTTGGCAGCTGCTGTTGTGAAAGCACTTCTGCAGATTACTGACGGTGATGAAAGTAATGAAAATGTTGCACGACTTGTTCTGGTATTAGAACAGCTTATGGGGACAGGTGGTGGCTGGCAGGATCAAATTGGGGGTCTCTACCCTGGCATTAAGTTTACTGCAAGTTTTCCTGGAATTCCGCTGCGACTACAAGTCATCCCACTTTTGGCTTCTCCTCCATTAGTTTCAGAGTTGCAGCAACGCTTGCTTGTGGTATTTACTGGTCAAGTTCGACTAGCACACCAAGTCTTGCAAAAGGTGGTAATCCGATACCTTCGAAGGGACAACCTTCTGGTATCCAGTATCAAGCGCCTCGCCGAATTGGCTAAGATCGGGAGAGAAGCTCTGATGAATTGCGACATAGACGACCTTGGGGACATAATGCTAGAGGCATGGAGGTTACATCAAGAACTCGACCCTTACTGCAGTAACGAGTTTGTCGATAGACTCTTTGAATTCGCACACCCCTATTGCACTGGCTACAAGCTCGTTGGTGCCGGTGGTGGAGGCTTTGCCTTGTTACTCGCCAAGGATGCCGAGCATGCAAAGAAACTGACACATTTGCTGGAAAAAGATTCGTACTTTAACGTCAAAGTATACAACTGGAACATCTCCTTAGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009225 GO:0009226 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042350 GO:0042352 GO:0043094 GO:0043173 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046368 GO:0046483 GO:0047341 GO:0050201 GO:0055086 GO:0070568 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 map00051 map00520 map01100

Pfam Domains

Protein Families

Fucokinase GHMP_kinases_C GHMP_kinases_N

Protein Analysis

1055

Amino Acids

115.41

Weight (kDa)

5.81

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fucose_pyrophosphorylase	PF07959	131 - 334	1.1e-62	Fucose pyrophosphorylase domain
Fucose_pyrophosphorylase	PF07959	341 - 521	9.3e-48	Fucose pyrophosphorylase domain
GHMP_kinases_N	PF00288	810 - 880	1.8e-11	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	961 - 1032	2.7e-06	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220
fragaria_vesca	FvH4_7g17030 FvH4_7g17030 FvH4_7g17030
malus_domestica	MD07G1153800.v1.1
prunus_persica	Prupe.2G192700_v2.0.a1 Prupe.2G192700_v2.0.a1 Prupe.2G192700_v2.0.a1
pyrus_communis	pycom07g15160
rosa_chinensis	RchiOBHm_Chr1g0360431
rosa_laevigata	RLG00000027808
rosa_multiflora	Rmu_ssc0000368.1_g000084
rosa_roxburghii	Rroxscaffold_4G00296110
rosa_rugosa	Rorug01G0277000 Rorug01G0277100
rosa_samantha	Rh1AG290900 Rh1BG256000 Rh1CG273700 Rh1DG285800
rosa_wichuraiana	Rw1G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1192
AasI	GACNNNNNNGTC	2 cut(s)	122, 1098
Acc36I	ACCTGC	2 cut(s)	988, 1192
Acc65I	GGTACC	3 cut(s)	66, 442, 976
AccB1I	GGYRCC	6 cut(s)	66, 260, 442, 976, 2258, 3035
AccBSI	CCGCTC	1 cut(s)	729
AccI	GTMKAC	1 cut(s)	3138
AccII	CGCG	3 cut(s)	102, 180, 285
AccIII	TCCGGA	1 cut(s)	1330
AclWI	GGATC	5 cut(s)	227, 1074, 1341, 2363, 2631
AcoI	YGGCCR	2 cut(s)	132, 241
AcsI	RAATTY	4 cut(s)	1416, 1806, 2676, 2996
AcuI	CTGAAG	2 cut(s)	947, 1995
AcvI	CACGTG	1 cut(s)	111
AcyI	GRCGYC	2 cut(s)	117, 261
AfaI	GTAC	6 cut(s)	68, 444, 612, 978, 1705, 3122
AfiI	CCNNNNNNNGG	4 cut(s)	111, 1364, 2707, 2821
AhdI	GACNNNNNGTC	1 cut(s)	2693
AjiI	CACGTC	1 cut(s)	40
AjnI	CCWGG	5 cut(s)	327, 1454, 1914, 2644, 2671
AleI	CACNNNNGTG	1 cut(s)	892
Alw21I	GWGCWC	2 cut(s)	832, 1508
Alw26I	GTCTC	5 cut(s)	77, 600, 1195, 2264, 2642
AlwI	GGATC	5 cut(s)	227, 1074, 1341, 2363, 2631
AlwNI	CAGNNNCTG	3 cut(s)	1154, 1997, 2513
Ama87I	CYCGRG	1 cut(s)	143
Aor13HI	TCCGGA	1 cut(s)	1330
AoxI	GGCC	6 cut(s)	132, 193, 241, 512, 1396, 2460
ApaI	GGGCCC	1 cut(s)	2464
ApoI	RAATTY	4 cut(s)	1416, 1806, 2676, 2996
ArsI	GACNNNNNNTTYG	2 cut(s)	2620, 2652
AseI	ATTAAT	4 cut(s)	848, 1275, 1716, 1761
Asp700I	GAANNNNTTC	3 cut(s)	470, 1806, 2424
Asp718I	GGTACC	3 cut(s)	66, 442, 976
AspLEI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2853
AspS9I	GGNCC	8 cut(s)	21, 193, 316, 502, 512, 517, 2460, 2461
AsuC2I	CCSGG	1 cut(s)	1124
AsuHPI	GGTGA	6 cut(s)	83, 208, 362, 673, 2143, 2558
AsuII	TTCGAA	1 cut(s)	2818
AsuNHI	GCTAGC	1 cut(s)	1169
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	4 cut(s)	21, 316, 502, 517
BaeGI	GKGCMC	1 cut(s)	2464
BanI	GGYRCC	6 cut(s)	66, 260, 442, 976, 2258, 3035
BanII	GRGCYC	2 cut(s)	1508, 2464
BauI	CACGAG	2 cut(s)	1653, 2472
BbrPI	CACGTG	1 cut(s)	111
BbsI	GAAGAC	4 cut(s)	463, 935, 1111, 2337
Bbv12I	GWGCWC	2 cut(s)	832, 1508
BbvCI	CCTCAGC	1 cut(s)	498
BccI	CCATC	6 cut(s)	128, 341, 503, 815, 1591, 2270
BceAI	ACGGC	5 cut(s)	32, 147, 209, 1172, 1890
BciT130I	CCWGG	5 cut(s)	329, 1456, 1916, 2646, 2673
BciVI	GTATCC	2 cut(s)	1233, 2848
BcnI	CCSGG	1 cut(s)	1124
BcoDI	GTCTC	5 cut(s)	77, 600, 1195, 2264, 2642
BfaI	CTAG	8 cut(s)	755, 780, 1170, 1853, 2124, 2496, 2777, 2927
BfmI	CTRYAG	5 cut(s)	1017, 1740, 1989, 2531, 2965
BfoI	RGCGCY	2 cut(s)	264, 2854
BfuAI	ACCTGC	2 cut(s)	988, 1192
BfuI	GTATCC	2 cut(s)	1233, 2848
BglI	GCCNNNNNGGC	1 cut(s)	2864
BglII	AGATCT	3 cut(s)	958, 1729, 1855
Bme1390I	CCNGG	6 cut(s)	329, 1124, 1456, 1916, 2646, 2673
Bme18I	GGWCC	4 cut(s)	21, 316, 502, 517
BmeRI	GACNNNNNGTC	1 cut(s)	2693
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	40
BmgT120I	GGNCC	8 cut(s)	21, 193, 316, 502, 512, 517, 2460, 2461
BmrFI	CCNGG	6 cut(s)	329, 1124, 1456, 1916, 2646, 2673
BmtI	GCTAGC	1 cut(s)	1173
BpiI	GAAGAC	4 cut(s)	463, 935, 1111, 2337
BplI	GAGNNNNNCTC	4 cut(s)	2167, 2199, 2869, 2901
BpmI	CTGGAG	5 cut(s)	444, 624, 1036, 1477, 2055
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	2818
BpuEI	CTTGAG	1 cut(s)	1624
BpuMI	CCSGG	1 cut(s)	1124
BsaAI	YACGTR	1 cut(s)	111
BsaHI	GRCGYC	2 cut(s)	117, 261
BsaI	GGTCTC	1 cut(s)	2642
BsaWI	WCCGGW	1 cut(s)	1330
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 1364, 2707, 2821
Bse118I	RCCGGY	2 cut(s)	514, 3038
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	1330
BseBI	CCWGG	5 cut(s)	329, 1456, 1916, 2646, 2673
BseGI	GGATG	7 cut(s)	367, 656, 1373, 1784, 2113, 2697, 3079
BseLI	CCNNNNNNNGG	4 cut(s)	111, 1364, 2707, 2821
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	4 cut(s)	489, 1064, 1611, 2058
BseRI	GAGGAG	6 cut(s)	890, 1637, 1682, 2058, 2175, 2706
BseSI	GKGCMC	1 cut(s)	2464
BseX3I	CGGCCG	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	2376
Bsh1236I	CGCG	3 cut(s)	102, 180, 285
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	6 cut(s)	134, 195, 243, 514, 1398, 2462
BshNI	GGYRCC	6 cut(s)	66, 260, 442, 976, 2258, 3035
BsiEI	CGRYCG	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	832, 1508
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	5 cut(s)	258, 515, 1124, 1331, 3039
BslI	CCNNNNNNNGG	4 cut(s)	111, 1364, 2707, 2821
BsmAI	GTCTC	5 cut(s)	77, 600, 1195, 2264, 2642
BsmBI	CGTCTC	3 cut(s)	77, 600, 1195
BsmI	GAATGC	1 cut(s)	1543
BsnI	GGCC	6 cut(s)	134, 195, 243, 514, 1398, 2462
Bso31I	GGTCTC	1 cut(s)	2642
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	2818
Bsp120I	GGGCCC	1 cut(s)	2460
Bsp1286I	GDGCHC	3 cut(s)	832, 1508, 2464
Bsp13I	TCCGGA	1 cut(s)	1330
Bsp1407I	TGTACA	1 cut(s)	1703
Bsp19I	CCATGG	2 cut(s)	459, 2189
BspANI	GGCC	6 cut(s)	134, 195, 243, 514, 1398, 2462
BspCNI	CTCAG	4 cut(s)	490, 1065, 1612, 2057
BspEI	TCCGGA	1 cut(s)	1330
BspFNI	CGCG	3 cut(s)	102, 180, 285
BspHI	TCATGA	2 cut(s)	1402, 2416
BspMAI	CTGCAG	5 cut(s)	1021, 1744, 1993, 2535, 2969
BspMI	ACCTGC	2 cut(s)	988, 1192
BspOI	GCTAGC	1 cut(s)	1173
BspPI	GGATC	5 cut(s)	227, 1074, 1341, 2363, 2631
BspT104I	TTCGAA	1 cut(s)	2818
BspT107I	GGYRCC	6 cut(s)	66, 260, 442, 976, 2258, 3035
BspTNI	GGTCTC	1 cut(s)	2642
BsrBI	CCGCTC	1 cut(s)	729
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	2 cut(s)	514, 3038
BsrGI	TGTACA	1 cut(s)	1703
BssAI	RCCGGY	2 cut(s)	514, 3038
BssNAI	GTATAC	1 cut(s)	3139
BssNI	GRCGYC	2 cut(s)	117, 261
BssSI	CACGAG	2 cut(s)	1653, 2472
BssT1I	CCWWGG	4 cut(s)	459, 2189, 2911, 3069
Bst1107I	GTATAC	1 cut(s)	3139
Bst2BI	CACGAG	2 cut(s)	1653, 2472
Bst2UI	CCWGG	5 cut(s)	329, 1456, 1916, 2646, 2673
Bst4CI	ACNGT	8 cut(s)	71, 214, 447, 673, 707, 1886, 2366, 2546
Bst6I	CTCTTC	1 cut(s)	2253
BstACI	GRCGYC	2 cut(s)	117, 261
BstAPI	GCANNNNNTGC	3 cut(s)	1154, 1733, 2746
BstAUI	TGTACA	1 cut(s)	1703
BstBAI	YACGTR	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	2818
BstDEI	CTNAG	9 cut(s)	498, 723, 1073, 1360, 1577, 1620, 2044, 2868, 3157
BstDSI	CCRYGG	4 cut(s)	446, 459, 703, 2189
BstEII	GGTNACC	1 cut(s)	761
BstF5I	GGATG	7 cut(s)	367, 656, 1373, 1784, 2113, 2697, 3079
BstFNI	CGCG	3 cut(s)	102, 180, 285
BstH2I	RGCGCY	2 cut(s)	264, 2854
BstHHI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2853
BstMAI	GTCTC	5 cut(s)	77, 600, 1195, 2264, 2642
BstMCI	CGRYCG	1 cut(s)	135
BstNI	CCWGG	5 cut(s)	329, 1456, 1916, 2646, 2673
BstNSI	RCATGY	4 cut(s)	1774, 1944, 1965, 3086
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	6 cut(s)	327, 1122, 1454, 1914, 2644, 2671
BstSFI	CTRYAG	5 cut(s)	1017, 1740, 1989, 2531, 2965
BstSLI	GKGCMC	1 cut(s)	2464
BstUI	CGCG	3 cut(s)	102, 180, 285
BstV2I	GAAGAC	4 cut(s)	463, 935, 1111, 2337
BstX2I	RGATCY	3 cut(s)	958, 1729, 1855
BstXI	CCANNNNNNTGG	2 cut(s)	190, 1873
BstYI	RGATCY	3 cut(s)	958, 1729, 1855
BstZ17I	GTATAC	1 cut(s)	3139
BstZI	CGGCCG	1 cut(s)	132
BsuI	GTATCC	2 cut(s)	1233, 2848
BsuRI	GGCC	6 cut(s)	134, 195, 243, 514, 1398, 2462
BtgI	CCRYGG	4 cut(s)	446, 459, 703, 2189
BtgZI	GCGATG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	40
BtsCI	GGATG	7 cut(s)	367, 656, 1373, 1784, 2113, 2697, 3079
BtsI	GCAGTG	1 cut(s)	2393
BtsIMutI	CAGTG	9 cut(s)	163, 1060, 1240, 1371, 2305, 2371, 2393, 2442, 3015
BveI	ACCTGC	2 cut(s)	988, 1192
CaiI	CAGNNNCTG	3 cut(s)	1154, 1997, 2513
CciI	TCATGA	2 cut(s)	1402, 2416
CfoI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2853
Cfr10I	RCCGGY	2 cut(s)	514, 3038
Cfr13I	GGNCC	8 cut(s)	21, 193, 316, 502, 512, 517, 2460, 2461
CseI	GACGC	2 cut(s)	125, 684
CsiI	ACCWGGT	1 cut(s)	1914
Csp6I	GTAC	6 cut(s)	67, 443, 611, 977, 1704, 3121
CviQI	GTAC	6 cut(s)	67, 443, 611, 977, 1704, 3121
DdeI	CTNAG	9 cut(s)	498, 723, 1073, 1360, 1577, 1620, 2044, 2868, 3157
DinI	GGCGCC	1 cut(s)	262
DraI	TTTAAA	1 cut(s)	574
DrdI	GACNNNNNNGTC	2 cut(s)	122, 1098
DriI	GACNNNNNGTC	1 cut(s)	2693
DseDI	GACNNNNNNGTC	2 cut(s)	122, 1098
EaeI	YGGCCR	2 cut(s)	132, 241
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	2253
Eam1105I	GACNNNNNGTC	1 cut(s)	2693
EarI	CTCTTC	1 cut(s)	2253
EciI	GGCGGA	2 cut(s)	65, 347
Ecl136II	GAGCTC	1 cut(s)	1506
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	4 cut(s)	459, 2189, 2911, 3069
Eco24I	GRGCYC	2 cut(s)	1508, 2464
Eco31I	GGTCTC	1 cut(s)	2642
Eco47I	GGWCC	4 cut(s)	21, 316, 502, 517
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	1506
Eco57I	CTGAAG	2 cut(s)	947, 1995
Eco72I	CACGTG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	143
Eco91I	GGTNACC	1 cut(s)	761
EcoICRI	GAGCTC	1 cut(s)	1506
EcoO109I	RGGNCCY	2 cut(s)	316, 502
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	2 cut(s)	2676, 2996
EcoRII	CCWGG	5 cut(s)	327, 1454, 1914, 2644, 2671
EcoT14I	CCWWGG	4 cut(s)	459, 2189, 2911, 3069
EcoT38I	GRGCYC	2 cut(s)	1508, 2464
EgeI	GGCGCC	1 cut(s)	262
EheI	GGCGCC	1 cut(s)	262
ErhI	CCWWGG	4 cut(s)	459, 2189, 2911, 3069
Esp3I	CGTCTC	3 cut(s)	77, 600, 1195
FauI	CCCGC	2 cut(s)	107, 528
FblI	GTMKAC	1 cut(s)	3138
FokI	GGATG	7 cut(s)	374, 643, 1380, 1791, 2120, 2684, 3086
FriOI	GRGCYC	2 cut(s)	1508, 2464
FspBI	CTAG	8 cut(s)	755, 780, 1170, 1853, 2124, 2496, 2777, 2927
GlaI	GCGC	6 cut(s)	103, 181, 248, 262, 286, 2852
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	5 cut(s)	444, 624, 1036, 1477, 2055
HaeII	RGCGCY	2 cut(s)	264, 2854
HaeIII	GGCC	6 cut(s)	134, 195, 243, 514, 1398, 2462
HapII	CCGG	5 cut(s)	258, 515, 1124, 1331, 3039
HgaI	GACGC	2 cut(s)	125, 684
HhaI	GCGC	6 cut(s)	104, 182, 249, 263, 287, 2853
Hin1I	GRCGYC	2 cut(s)	117, 261
Hin6I	GCGC	6 cut(s)	102, 180, 247, 261, 285, 2851
HinP1I	GCGC	6 cut(s)	102, 180, 247, 261, 285, 2851
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	8 cut(s)	431, 454, 1205, 1220, 1830, 1891, 2988, 3116
HpaII	CCGG	5 cut(s)	258, 515, 1124, 1331, 3039
HphI	GGTGA	6 cut(s)	83, 208, 362, 673, 2143, 2558
Hpy166II	GTNNAC	4 cut(s)	594, 1704, 2658, 3139
Hpy8I	GTNNAC	4 cut(s)	594, 1704, 2658, 3139
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	9 cut(s)	575, 1409, 1456, 2121, 2128, 2234, 2814, 2825, 2840
HpyCH4III	ACNGT	8 cut(s)	71, 214, 447, 673, 707, 1886, 2366, 2546
HpyCH4IV	ACGT	4 cut(s)	39, 110, 609, 3129
HpyF3I	CTNAG	9 cut(s)	498, 723, 1073, 1360, 1577, 1620, 2044, 2868, 3157
HpySE526I	ACGT	4 cut(s)	39, 110, 609, 3129
Hsp92I	GRCGYC	2 cut(s)	117, 261
HspAI	GCGC	6 cut(s)	102, 180, 247, 261, 285, 2851
KasI	GGCGCC	1 cut(s)	260
KflI	GGGWCCC	1 cut(s)	316
Kpn2I	TCCGGA	1 cut(s)	1330
KpnI	GGTACC	3 cut(s)	70, 446, 980
LmnI	GCTCC	9 cut(s)	177, 260, 334, 877, 1079, 1503, 1876, 2193, 2200
MabI	ACCWGGT	1 cut(s)	1914
MaeI	CTAG	8 cut(s)	755, 780, 1170, 1853, 2124, 2496, 2777, 2927
MaeII	ACGT	4 cut(s)	39, 110, 609, 3129
MaeIII	GTNAC	9 cut(s)	89, 214, 761, 883, 2177, 2401, 2940, 2969, 3060
MbiI	CCGCTC	1 cut(s)	729
MfeI	CAATTG	5 cut(s)	546, 1194, 1683, 2253, 2343
MflI	RGATCY	3 cut(s)	958, 1729, 1855
MhlI	GDGCHC	3 cut(s)	832, 1508, 2464
Mly113I	GGCGCC	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	1214, 1839, 2982
MmeI	TCCRAC	2 cut(s)	60, 2153
MroI	TCCGGA	1 cut(s)	1330
MroXI	GAANNNNTTC	3 cut(s)	470, 1806, 2424
MslI	CAYNNNNRTG	3 cut(s)	892, 1074, 2421
MspA1I	CMGCKG	5 cut(s)	497, 523, 2481, 2510, 2683
MspI	CCGG	5 cut(s)	258, 515, 1124, 1331, 3039
MspR9I	CCNGG	6 cut(s)	329, 1124, 1456, 1916, 2646, 2673
MunI	CAATTG	5 cut(s)	546, 1194, 1683, 2253, 2343
Mva1269I	GAATGC	1 cut(s)	1543
MvaI	CCWGG	5 cut(s)	329, 1456, 1916, 2646, 2673
MvnI	CGCG	3 cut(s)	102, 180, 285
NarI	GGCGCC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	1124
NcoI	CCATGG	2 cut(s)	459, 2189
NheI	GCTAGC	1 cut(s)	1169
NmeAIII	GCCGAG	2 cut(s)	219, 3103
NmuCI	GTSAC	4 cut(s)	89, 214, 2177, 2401
NspI	RCATGY	4 cut(s)	1774, 1944, 1965, 3086
NspV	TTCGAA	1 cut(s)	2818
OliI	CACNNNNGTG	1 cut(s)	892
PaeI	GCATGC	3 cut(s)	1774, 1944, 3086
PagI	TCATGA	2 cut(s)	1402, 2416
PaqCI	CACCTGC	1 cut(s)	1192
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 228, 2979
PctI	GAATGC	1 cut(s)	1543
PdmI	GAANNNNTTC	3 cut(s)	470, 1806, 2424
PfeI	GAWTC	5 cut(s)	431, 454, 1205, 1891, 3116
PfoI	TCCNGGA	1 cut(s)	2671
PleI	GAGTC	3 cut(s)	1214, 1838, 2982
PluTI	GGCGCC	1 cut(s)	264
PmaCI	CACGTG	1 cut(s)	111
PmlI	CACGTG	1 cut(s)	111
PpsI	GAGTC	3 cut(s)	1214, 1838, 2982
Ppu21I	YACGTR	1 cut(s)	111
PpuMI	RGGWCCY	2 cut(s)	316, 502
PshBI	ATTAAT	4 cut(s)	848, 1275, 1716, 1761
Psp124BI	GAGCTC	1 cut(s)	1508
Psp5II	RGGWCCY	2 cut(s)	316, 502
Psp6I	CCWGG	5 cut(s)	327, 1454, 1914, 2644, 2671
PspCI	CACGTG	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	761
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	5 cut(s)	327, 1454, 1914, 2644, 2671
PspOMI	GGGCCC	1 cut(s)	2460
PspPI	GGNCC	8 cut(s)	21, 193, 316, 502, 512, 517, 2460, 2461
PspPPI	RGGWCCY	2 cut(s)	316, 502
PstI	CTGCAG	5 cut(s)	1021, 1744, 1993, 2535, 2969
PstNI	CAGNNNCTG	3 cut(s)	1154, 1997, 2513
PsuI	RGATCY	3 cut(s)	958, 1729, 1855
PvuII	CAGCTG	2 cut(s)	497, 2510
RsaI	GTAC	6 cut(s)	68, 444, 612, 978, 1705, 3122
RsaNI	GTAC	6 cut(s)	67, 443, 611, 977, 1704, 3121
RseI	CAYNNNNRTG	3 cut(s)	892, 1074, 2421
SacI	GAGCTC	1 cut(s)	1508
Sau96I	GGNCC	8 cut(s)	21, 193, 316, 502, 512, 517, 2460, 2461
SchI	GAGTC	3 cut(s)	1214, 1839, 2982
ScrFI	CCNGG	6 cut(s)	329, 1124, 1456, 1916, 2646, 2673
SduI	GDGCHC	3 cut(s)	832, 1508, 2464
SexAI	ACCWGGT	1 cut(s)	1914
SfcI	CTRYAG	5 cut(s)	1017, 1740, 1989, 2531, 2965
SfoI	GGCGCC	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	2818
SinI	GGWCC	4 cut(s)	21, 316, 502, 517
SmiMI	CAYNNNNRTG	3 cut(s)	892, 1074, 2421
SmlI	CTYRAG	1 cut(s)	1603
SmoI	CTYRAG	1 cut(s)	1603
SphI	GCATGC	3 cut(s)	1774, 1944, 3086
SspDI	GGCGCC	1 cut(s)	260
SspMI	CTAG	8 cut(s)	755, 780, 1170, 1853, 2124, 2496, 2777, 2927
SstI	GAGCTC	1 cut(s)	1508
StyD4I	CCNGG	6 cut(s)	327, 1122, 1454, 1914, 2644, 2671
StyI	CCWWGG	4 cut(s)	459, 2189, 2911, 3069
TaaI	ACNGT	8 cut(s)	71, 214, 447, 673, 707, 1886, 2366, 2546
TaiI	ACGT	4 cut(s)	42, 113, 612, 3132
TaqI	TCGA	8 cut(s)	531, 687, 1102, 1936, 2773, 2818, 2955, 2982
TatI	WGTACW	1 cut(s)	1703
TauI	GCSGC	7 cut(s)	107, 137, 198, 266, 1003, 1739, 2484
TfiI	GAWTC	5 cut(s)	431, 454, 1205, 1891, 3116
TscAI	CASTG	9 cut(s)	170, 1060, 1240, 1378, 2305, 2371, 2400, 2442, 3022
TseFI	GTSAC	4 cut(s)	89, 214, 2177, 2401
Tsp45I	GTSAC	4 cut(s)	89, 214, 2177, 2401
TspGWI	ACGGA	3 cut(s)	73, 77, 1449
TspRI	CASTG	9 cut(s)	170, 1060, 1240, 1378, 2305, 2371, 2400, 2442, 3022
VpaK11BI	GGWCC	4 cut(s)	21, 316, 502, 517
VspI	ATTAAT	4 cut(s)	848, 1275, 1716, 1761
XapI	RAATTY	4 cut(s)	1416, 1806, 2676, 2996
XbaI	TCTAGA	1 cut(s)	1852
XceI	RCATGY	4 cut(s)	1774, 1944, 1965, 3086
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1060, 2471
XmiI	GTMKAC	1 cut(s)	3138
XmnI	GAANNNNTTC	3 cut(s)	470, 1806, 2424
XspI	CTAG	8 cut(s)	755, 780, 1170, 1853, 2124, 2496, 2777, 2927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.