Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006177

Physical Location & Seq

Genomic Coordinates Reverse (-)

38940304 .. 38940501

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0277100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGAAGCCTGGTACCACTGTGATTCTACGCAATGCAAAGATTGACATGTTCATCAAGGGTACTATGAGGCTTGTAGTTGATAAATGGGGTCGTGTTGAAGTCACAGAACCAGCCAGCTTTGAAGTCAAGGAGGTCAACAATCTTTCTCTTGTCGAGTATGAATTACTTAGTGTTGCTGAATCAGATCAGAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009225 GO:0009226 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0018130 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042350 GO:0042352 GO:0043094 GO:0043173 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046368 GO:0046483 GO:0047341 GO:0050201 GO:0055086 GO:0070568 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 map00051 map00520 map01100

Pfam Domains

Protein Families

Fucokinase GHMP_kinases_C GHMP_kinases_N

Protein Analysis

65

Amino Acids

7.34

Weight (kDa)

5.31

Isoelectric Point (pI)

12.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	1 - 34	5.3e-14	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220 AT1G01220
fragaria_vesca	FvH4_7g17030 FvH4_7g17030 FvH4_7g17030
malus_domestica	MD07G1153800.v1.1
prunus_persica	Prupe.2G192700_v2.0.a1 Prupe.2G192700_v2.0.a1 Prupe.2G192700_v2.0.a1
pyrus_communis	pycom07g15160
rosa_chinensis	RchiOBHm_Chr1g0360431
rosa_laevigata	RLG00000027808
rosa_multiflora	Rmu_ssc0000368.1_g000084
rosa_roxburghii	Rroxscaffold_4G00296110
rosa_rugosa	Rorug01G0277000 Rorug01G0277100
rosa_samantha	Rh1AG290900 Rh1BG256000 Rh1CG273700 Rh1DG285800
rosa_wichuraiana	Rw1G025760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	13, 61
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	98, 122
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	2 cut(s)	117, 195
AluI	AGCT	2 cut(s)	117, 195
Asp718I	GGTACC	1 cut(s)	11
BaeI	ACNNNNGTAYC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	37
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	12, 60
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	5 cut(s)	7, 70, 113, 117, 195
CviKI_1	RGCY	5 cut(s)	7, 70, 113, 117, 195
CviQI	GTAC	2 cut(s)	12, 60
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	7
FaeI	CATG	1 cut(s)	49
FaiI	YATR	3 cut(s)	47, 65, 159
FatI	CATG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	22, 179
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	184, 189
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	49
KpnI	GGTACC	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	3 cut(s)	21, 123, 127
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	2 cut(s)	60, 124
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	49
PciI	ACATGT	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	22, 179
PscI	ACATGT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	13
RsaI	GTAC	2 cut(s)	13, 61
RsaNI	GTAC	2 cut(s)	12, 60
Sau3AI	GATC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	9
SetI	ASST	3 cut(s)	119, 135, 197
Sse9I	AATT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	22, 179
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	17, 40, 174
TspRI	CASTG	1 cut(s)	22
XceI	RCATGY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.