RLG00000028092

LRR receptor-like serine threonine-protein kinase At3g47570

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018146
Physical Location & Seq
Reverse (-)
18599004 .. 18600486
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028092

Sequence Viewer

Length: 642 bp
ATGCGGAGCTTAGAGGTGTGGCTGCATCCAAGCACGAGAACAAAAGAGGCAAGAGATGCGCCCAAGATCTCAAGTCTTATCCAGAGGCTAGAAATCGCCATTGATGTTGCTTGTGCGCTGGATTTTCTTCACAATCATAGGGTAATGAGAGTTCATGGTGATCTCAAGCCAAGTAATGTTTTTTTGGACGAAACGCTCATGGCAGTGATTGGACGCGTTCGTGACTGTGTGCCGGCAAGGTCTCCCTCAAACCTAAGCAATAATGTTTTTAAAAATAAATCAAGCTCCACTATAGGATCCGTGGGTTACACAGCTCCAGAGTATGGTACGGGAAGTGGAGAGCGAAAATACTGGGATGTTTACAGTTCTGGCATTCTCCTATTAGAAATGTTTACCGGAAAACGACCCACAGATCTCATGAATATTCGTAATTTTGTGAAAATGGCTATTCCTGAACGAGTTACAGAAATTGCAGATTCAAGACTGCTTCAAAGAGGCACCAATGATACTCAAAAAAATGAGTGCTTGATTTCGATATTTGAAATTGGAATTGCATGTTCAGATGGAGCCCAAAGTGACCGAATGAGTATCGATCGTGTTGTGCCTAGATTGCATTCCATTAGAGACCGTCTTCTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

214

Amino Acids

23.92

Weight (kDa)

8.96

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 25 - 203 3.7e-12 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 31 - 156 2.1e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018146)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0356211 RchiOBHm_Chr1g0356491
rosa_laevigata RLG00000028092 RLG00000028093 RLG00000028099
rosa_multiflora Rmu_sc0000281.1_g000018 Rmu_sc0014206.1_g000003
rosa_roxburghii Rroxscaffold_4G00299490
rosa_rugosa Rorug01G0250100 Rorug01G0250100
rosa_wichuraiana Rw1G023310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 323
AccII CGCG 1 cut(s) 216
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 291, 304
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 3 cut(s) 480, 491, 542
AluBI AGCT 3 cut(s) 9, 285, 314
AluI AGCT 3 cut(s) 9, 285, 314
Alw26I GTCTC 2 cut(s) 246, 618
AlwI GGATC 2 cut(s) 291, 304
ApeKI GCWGC 1 cut(s) 22
AspLEI GCGC 2 cut(s) 61, 118
AsuHPI GGTGA 1 cut(s) 170
BamHI GGATCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 571
BauI CACGAG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 9
BccI CCATC 1 cut(s) 557
BcoDI GTCTC 2 cut(s) 246, 618
BfaI CTAG 2 cut(s) 89, 606
BfmI CTRYAG 1 cut(s) 291
BglII AGATCT 2 cut(s) 66, 412
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 298, 499, 568
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 34, 46
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 55, 149
Bsa29I ATCGAT 1 cut(s) 591
BsaI GGTCTC 2 cut(s) 246, 618
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 356
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 25, 361
BseLI CCNNNNNNNGG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 595
BshNI GGYRCC 1 cut(s) 497
BshVI ATCGAT 1 cut(s) 591
BsiEI CGRYCG 1 cut(s) 595
BsiSI CCGG 2 cut(s) 233, 396
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 246, 618
BsmI GAATGC 2 cut(s) 372, 613
Bso31I GGTCTC 2 cut(s) 246, 618
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 5 cut(s) 66, 160, 296, 412, 592
BspACI CCGC 1 cut(s) 4
BspDI ATCGAT 1 cut(s) 591
BspFNI CGCG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 3 cut(s) 298, 499, 568
BspPI GGATC 2 cut(s) 291, 304
BspT107I GGYRCC 1 cut(s) 497
BspTNI GGTCTC 2 cut(s) 246, 618
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 5 cut(s) 66, 160, 296, 412, 592
BssSI CACGAG 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 34
Bst4CI ACNGT 3 cut(s) 227, 365, 629
BstAPI GCANNNNNTGC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 10, 254
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 25, 361
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 2 cut(s) 61, 118
BstKTI GATC 5 cut(s) 69, 163, 299, 415, 595
BstMAI GTCTC 2 cut(s) 246, 618
BstMBI GATC 5 cut(s) 66, 160, 296, 412, 592
BstMCI CGRYCG 1 cut(s) 595
BstMWI GCNNNNNNNGC 2 cut(s) 56, 610
BstNSI RCATGY 1 cut(s) 558
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 9
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 3 cut(s) 66, 296, 412
BstYI RGATCY 3 cut(s) 66, 296, 412
Bsu15I ATCGAT 1 cut(s) 591
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 25, 361
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 234
CciI TCATGA 1 cut(s) 417
CfoI GCGC 2 cut(s) 61, 118
Cfr10I RCCGGY 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 327
CviAII CATG 4 cut(s) 155, 199, 418, 555
CviJI RGCY 8 cut(s) 9, 22, 88, 169, 285, 314, 446, 569
CviKI_1 RGCY 8 cut(s) 9, 22, 88, 169, 285, 314, 446, 569
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 2 cut(s) 10, 254
DpnI GATC 5 cut(s) 68, 162, 298, 414, 594
DpnII GATC 5 cut(s) 66, 160, 296, 412, 592
DraI TTTAAA 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 571
Eco31I GGTCTC 2 cut(s) 246, 618
EcoT38I GRGCYC 1 cut(s) 571
FaeI CATG 4 cut(s) 158, 202, 421, 558
FaiI YATR 8 cut(s) 138, 156, 200, 293, 324, 419, 556, 640
FatI CATG 4 cut(s) 154, 198, 417, 554
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 2 cut(s) 12, 368
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 2 cut(s) 89, 606
GlaI GCGC 2 cut(s) 60, 117
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 300
HapII CCGG 2 cut(s) 233, 396
HgaI GACGC 1 cut(s) 222
HhaI GCGC 2 cut(s) 61, 118
Hin1II CATG 4 cut(s) 158, 202, 421, 558
Hin6I GCGC 2 cut(s) 59, 116
HinP1I GCGC 2 cut(s) 59, 116
HinfI GANTC 1 cut(s) 476
HpaII CCGG 2 cut(s) 233, 396
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 361, 393
Hpy188I TCNGA 1 cut(s) 562
Hpy188III TCNNGA 6 cut(s) 82, 221, 317, 418, 452, 480
Hpy8I GTNNAC 2 cut(s) 361, 393
HpyCH4III ACNGT 3 cut(s) 227, 365, 629
HpyCH4V TGCA 4 cut(s) 25, 473, 554, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 610
HpyF3I CTNAG 2 cut(s) 10, 254
Hsp92II CATG 4 cut(s) 158, 202, 421, 558
HspAI GCGC 2 cut(s) 59, 116
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Kzo9I GATC 5 cut(s) 66, 160, 296, 412, 592
LmnI GCTCC 4 cut(s) 6, 290, 319, 566
LpnPI CCDG 8 cut(s) 95, 104, 246, 330, 337, 354, 409, 465
Lsp1109I GCAGC 1 cut(s) 9
LweI GCATC 2 cut(s) 34, 46
MaeI CTAG 2 cut(s) 89, 606
MaeIII GTNAC 4 cut(s) 221, 305, 460, 575
MalI GATC 5 cut(s) 68, 162, 298, 414, 594
MboI GATC 5 cut(s) 66, 160, 296, 412, 592
MboII GAAGA 2 cut(s) 119, 623
MflI RGATCY 3 cut(s) 66, 296, 412
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 4 cut(s) 430, 468, 543, 549
MluI ACGCGT 1 cut(s) 214
MnlI CCTC 5 cut(s) 7, 40, 78, 256, 488
MroNI GCCGGC 1 cut(s) 232
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 2 cut(s) 233, 396
Mva1269I GAATGC 2 cut(s) 372, 613
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 56, 610
NaeI GCCGGC 1 cut(s) 234
NdeII GATC 5 cut(s) 66, 160, 296, 412, 592
NgoMIV GCCGGC 1 cut(s) 232
NlaIII CATG 4 cut(s) 158, 202, 421, 558
NlaIV GGNNCC 3 cut(s) 298, 499, 568
NmuCI GTSAC 2 cut(s) 221, 575
NspI RCATGY 1 cut(s) 558
PagI TCATGA 1 cut(s) 417
PctI GAATGC 2 cut(s) 372, 613
PdiI GCCGGC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 476
PflMI CCANNNNNTGG 1 cut(s) 323
PkrI GCNGC 1 cut(s) 24
Ple19I CGATCG 1 cut(s) 595
PspN4I GGNNCC 3 cut(s) 298, 499, 568
PsrI GAACNNNNNNTAC 2 cut(s) 135, 167
PsuI RGATCY 3 cut(s) 66, 296, 412
PvuI CGATCG 1 cut(s) 595
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 5 cut(s) 66, 160, 296, 412, 592
SduI GDGCHC 1 cut(s) 571
SetI ASST 6 cut(s) 11, 18, 242, 255, 287, 316
SfaNI GCATC 2 cut(s) 34, 46
SfcI CTRYAG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 70, 164
SmoI CTYRAG 2 cut(s) 70, 164
Sse9I AATT 4 cut(s) 430, 468, 543, 549
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 424
SspMI CTAG 2 cut(s) 89, 606
TaaI ACNGT 3 cut(s) 227, 365, 629
TaqI TCGA 2 cut(s) 533, 591
TaqII GACCGA 1 cut(s) 594
TasI AATT 4 cut(s) 430, 468, 543, 549
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 2 cut(s) 221, 575
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 2 cut(s) 221, 575
TspDTI ATGAA 2 cut(s) 143, 434
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 1 cut(s) 210
Van91I CCANNNNNTGG 1 cut(s) 323
XceI RCATGY 1 cut(s) 558
XspI CTAG 2 cut(s) 89, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.