RLG00000028099

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018146
Physical Location & Seq
Reverse (-)
18695200 .. 18696135
936 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028099

Sequence Viewer

Length: 330 bp
ATGTTTACAGGAAAGAAACCCACTGATGACATGTTCAGTGACCGCTTGAACCTTCATAAATTTGTGAGTATGTCTTACTTTAAGGGAGTATTTCCAGAGATTGCGGATCCAAGACTACTTTTCCAAGGAGGCAACAGTCCTCCCAGTAAATGCAGTGTGAAATTCAAATCGGAAATTGGGCAGTGCTTGAGATCGATATTTGAAATTGGAATTGTGTGTTCCACGAACACAGCTGAGTGTAGTTCAGCGAACACAGCTGCAACCAGCAACCCGTCTCCGCCAGTCCGCCTCTCCGGTCTCCGGTCTCCGAGCTCCGCCTTTAGGCTCTAG

Protein Analysis

110

Amino Acids

11.84

Weight (kDa)

9.3

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018146)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0356211 RchiOBHm_Chr1g0356491
rosa_laevigata RLG00000028092 RLG00000028093 RLG00000028099
rosa_multiflora Rmu_sc0000281.1_g000018 Rmu_sc0014206.1_g000003
rosa_roxburghii Rroxscaffold_4G00299490
rosa_rugosa Rorug01G0250100 Rorug01G0250100
rosa_wichuraiana Rw1G023310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 43, 104, 278, 286, 315
AclWI GGATC 2 cut(s) 101, 114
AcsI RAATTY 2 cut(s) 59, 161
AfiI CCNNNNNNNGG 2 cut(s) 300, 321
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 3 cut(s) 49, 166, 203
AluBI AGCT 3 cut(s) 233, 257, 312
AluI AGCT 3 cut(s) 233, 257, 312
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 3 cut(s) 279, 302, 309
AlwI GGATC 2 cut(s) 101, 114
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 59, 161
BamHI GGATCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 279, 302, 309
BfaI CTAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 194
BsaI GGTCTC 2 cut(s) 302, 309
BsaJI CCNNGG 1 cut(s) 124
BsaWI WCCGGW 2 cut(s) 293, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 300, 321
Bse1I ACTGG 2 cut(s) 144, 281
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 300, 321
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 2 cut(s) 144, 281
BseXI GCAGC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 2 cut(s) 294, 301
BslI CCNNNNNNNGG 2 cut(s) 300, 321
BsmAI GTCTC 3 cut(s) 279, 302, 309
BsmBI CGTCTC 1 cut(s) 279
Bso31I GGTCTC 2 cut(s) 302, 309
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 106, 191
BspACI CCGC 5 cut(s) 43, 104, 278, 286, 315
BspCNI CTCAG 1 cut(s) 226
BspDI ATCGAT 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 2 cut(s) 101, 114
BspTNI GGTCTC 2 cut(s) 302, 309
BsrI ACTGG 2 cut(s) 144, 281
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 2 cut(s) 106, 191
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 2 cut(s) 109, 194
BstMAI GTCTC 3 cut(s) 279, 302, 309
BstMBI GATC 2 cut(s) 106, 191
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 194
BtsI GCAGTG 2 cut(s) 160, 188
BtsIMutI CAGTG 4 cut(s) 21, 43, 160, 188
ClaI ATCGAT 1 cut(s) 194
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 233, 257, 312, 325
CviKI_1 RGCY 4 cut(s) 233, 257, 312, 325
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 108, 193
DpnII GATC 2 cut(s) 106, 191
EciI GGCGGA 3 cut(s) 267, 275, 304
Ecl136II GAGCTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 314
Eco31I GGTCTC 2 cut(s) 302, 309
Eco53kI GAGCTC 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 124
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 57, 71
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 328
GluI GCNGC 1 cut(s) 258
HapII CCGG 2 cut(s) 294, 301
Hin1II CATG 1 cut(s) 34
HpaII CCGG 2 cut(s) 294, 301
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 172, 309
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 153, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 2 cut(s) 106, 191
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 6 cut(s) 108, 157, 277, 294, 307, 314
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 108, 193
MboI GATC 2 cut(s) 106, 191
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 5 cut(s) 59, 161, 174, 204, 210
MnlI CCTC 3 cut(s) 122, 150, 299
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 233, 257
MspI CCGG 2 cut(s) 294, 301
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 2 cut(s) 106, 191
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 38
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PkrI GCNGC 1 cut(s) 259
PscI ACATGT 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 106
PvuII CAGCTG 2 cut(s) 233, 257
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 106, 191
SduI GDGCHC 1 cut(s) 314
SetI ASST 4 cut(s) 54, 235, 259, 314
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 5 cut(s) 59, 161, 174, 204, 210
SsiI CCGC 5 cut(s) 43, 104, 278, 286, 315
SspMI CTAG 1 cut(s) 328
SstI GAGCTC 1 cut(s) 314
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 194
TasI AATT 5 cut(s) 59, 161, 174, 204, 210
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 4 cut(s) 28, 43, 160, 188
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 4 cut(s) 28, 43, 160, 188
XapI RAATTY 2 cut(s) 59, 161
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.