RLG00000029046

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018482
Physical Location & Seq
Forward (+)
31964872 .. 31965394
523 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029046

Sequence Viewer

Length: 417 bp
ATGCCGAGTGAATTAACTGACAAATTTAAAGAGGTTGCCGAACTTATTAAGACAAAAGCAGATAAACACTGCATGCAGCGGCAACCACTTCAGATGCGGAAGCAAAAGCCAGTGGCTATTAAAATGCTCAATCCAAAATTTGAGGAGAACTTTGTCCAGGGTAGAGACTACGATCCAGACCGTGAACGGGTTGAGAGAAAGAAGTTGAAGAAGCGTTTGACACAAGAAGGTAAAGGTGCTGTTCGCGAAGTGCGTAAAGATAATTATTTCTTACAGGAGCTGAAGTCGAGGGATAAGGCTCTGATGGAAGAAGAAAGAGCTGAGAAATATGGAAAAGCAAGACTTTTCCTTCAAGAGCGAGAACATGCTATGAAATCTGGGCAATTAGGAAAAGGCAGGGGGAAGAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop14

Protein Analysis

139

Amino Acids

16.5

Weight (kDa)

10.1

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop14 PF04147 1 - 122 1.3e-34 Nop14-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018482)

Species Orthologous Gene IDs
malus_domestica MD13G1058800.v1.1
pyrus_communis pycom13g05240
rosa_chinensis RchiOBHm_Chr1g0340811
rosa_laevigata RLG00000029046
rosa_multiflora Rmu_co8097760.1_g000001 Rmu_sc0002200.1_g000056
rosa_roxburghii Rroxscaffold_4G00311500
rosa_samantha Rh1BG144200 Rh1CG164000 Rh1DG175900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 79, 97
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 2 cut(s) 23, 137
AcuI CTGAAG 2 cut(s) 74, 302
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 208, 353
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 2 cut(s) 280, 320
AluI AGCT 2 cut(s) 280, 320
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 2 cut(s) 23, 137
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 159
BisI GCNGC 2 cut(s) 77, 80
BlsI GCNGC 2 cut(s) 78, 81
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 172
Bsp68I TCGCGA 1 cut(s) 246
BspACI CCGC 2 cut(s) 79, 97
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 1 cut(s) 246
BspPI GGATC 1 cut(s) 167
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 76, 368
BstSCI CCNGG 1 cut(s) 156
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 67, 117
BtuMI TCGCGA 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 74
CaiI CAGNNNCTG 1 cut(s) 280
CviAII CATG 2 cut(s) 73, 365
CviJI RGCY 5 cut(s) 109, 116, 280, 299, 320
CviKI_1 RGCY 5 cut(s) 109, 116, 280, 299, 320
DdeI CTNAG 1 cut(s) 321
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DraI TTTAAA 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Eco57I CTGAAG 2 cut(s) 74, 302
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 76, 368
FaiI YATR 4 cut(s) 74, 330, 366, 371
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 2 cut(s) 72, 364
Fnu4HI GCNGC 2 cut(s) 77, 80
Fsp4HI GCNGC 2 cut(s) 77, 80
GluI GCNGC 2 cut(s) 77, 80
Hin1II CATG 2 cut(s) 76, 368
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 93, 303
Hpy188III TCNNGA 3 cut(s) 176, 245, 353
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 221, 359
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 72, 76
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 2 cut(s) 76, 368
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 7 cut(s) 123, 143, 170, 189, 260, 363, 382
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 84
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 4 cut(s) 220, 320, 323, 415
MluCI AATT 5 cut(s) 11, 23, 137, 262, 383
MnlI CCTC 3 cut(s) 25, 136, 282
MseI TTAA 4 cut(s) 14, 27, 48, 120
MspA1I CMGCKG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MvnI CGCG 1 cut(s) 246
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 76, 368
NmeAIII GCCGAG 1 cut(s) 30
NruI TCGCGA 1 cut(s) 246
NspI RCATGY 2 cut(s) 76, 368
PaeI GCATGC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PkrI GCNGC 2 cut(s) 78, 81
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 280
RruI TCGCGA 1 cut(s) 246
SaqAI TTAA 4 cut(s) 14, 27, 48, 120
SatI GCNGC 2 cut(s) 77, 80
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 158
SetI ASST 5 cut(s) 36, 232, 238, 282, 322
SfaNI GCATC 1 cut(s) 84
SphI GCATGC 1 cut(s) 76
Sse9I AATT 5 cut(s) 11, 23, 137, 262, 383
SsiI CCGC 2 cut(s) 79, 97
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 287
TasI AATT 5 cut(s) 11, 23, 137, 262, 383
TauI GCSGC 1 cut(s) 82
Tru1I TTAA 4 cut(s) 14, 27, 48, 120
Tru9I TTAA 4 cut(s) 14, 27, 48, 120
TscAI CASTG 2 cut(s) 74, 117
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 2 cut(s) 74, 117
XapI RAATTY 2 cut(s) 23, 137
XceI RCATGY 2 cut(s) 76, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.