Rh1CG164000

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018482
Physical Location & Seq
Reverse (-)
36183491 .. 36190719
7229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG164000.1

Sequence Viewer

Length: 342 bp
ATGTTTCTTCAAACATTGTTAACGGCGGCCAAAGAGAGAAAGCCAAAGTCAACTCAAGATGCTGAGCTTTGTCCAGGACTCCAGGGTAGAGACTACGATCCAGACCGTGAACGGGTTGAGAGAAAGAAGTTGAAGAAGCGTTTGACACAAGAAGGTAAATGTGCTGTTCGCGAAGTGCGTAAAGATAATTATTTCTTACAGGAGCTGAAGTCGAGGGATAAGGCTCTGATGGAAGAAGAAAGAGCTGAGAAATGTGGAAAAGAAAGACTTTTCCTTCAAGAGCGAGAACATGCTATGAAATCTGGGCAATTAGGAAAAGGCAGGGGGAAGAGAAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop14

Protein Analysis

113

Amino Acids

13.36

Weight (kDa)

9.92

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop14 PF04147 29 - 97 3.8e-14 Nop14-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018482)

Species Orthologous Gene IDs
malus_domestica MD13G1058800.v1.1
pyrus_communis pycom13g05240
rosa_chinensis RchiOBHm_Chr1g0340811
rosa_laevigata RLG00000029046
rosa_multiflora Rmu_co8097760.1_g000001 Rmu_sc0002200.1_g000056
rosa_roxburghii Rroxscaffold_4G00311500
rosa_samantha Rh1BG144200 Rh1CG164000 Rh1DG175900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 92
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 3 cut(s) 11, 133, 278
AjnI CCWGG 2 cut(s) 73, 81
AluBI AGCT 3 cut(s) 67, 205, 245
AluI AGCT 3 cut(s) 67, 205, 245
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 92
AlwNI CAGNNNCTG 1 cut(s) 205
AoxI GGCC 1 cut(s) 27
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 75, 83
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 75, 83
BmrFI CCNGG 2 cut(s) 75, 83
BmsI GCATC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 65
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseBI CCWGG 2 cut(s) 75, 83
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 54, 237
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 97
Bsp1720I GCTNAGC 1 cut(s) 63
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 55, 238
BspFNI CGCG 1 cut(s) 171
BspPI GGATC 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 75, 83
Bst4CI ACNGT 1 cut(s) 107
Bst6I CTCTTC 1 cut(s) 323
BstDEI CTNAG 2 cut(s) 63, 246
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 97
BstNI CCWGG 2 cut(s) 75, 83
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 73, 81
BstUI CGCG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 29
BtuMI TCGCGA 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 205
CviAII CATG 1 cut(s) 290
CviJI RGCY 6 cut(s) 29, 43, 67, 205, 224, 245
CviKI_1 RGCY 6 cut(s) 29, 43, 67, 205, 224, 245
DdeI CTNAG 2 cut(s) 63, 246
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 73, 81
FaeI CATG 1 cut(s) 293
FaiI YATR 2 cut(s) 291, 296
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 29
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 2 cut(s) 21, 51
HindII GTYRAC 2 cut(s) 21, 51
HinfI GANTC 1 cut(s) 78
HpaI GTTAAC 1 cut(s) 21
Hpy166II GTNNAC 3 cut(s) 21, 51, 110
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 4 cut(s) 56, 101, 170, 278
Hpy8I GTNNAC 3 cut(s) 21, 51, 110
HpyAV CCTTC 2 cut(s) 146, 284
HpyCH4III ACNGT 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 63, 246
Hsp92II CATG 1 cut(s) 293
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 8 cut(s) 60, 68, 87, 95, 114, 185, 288, 307
LweI GCATC 1 cut(s) 49
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 4 cut(s) 145, 245, 248, 340
MluCI AATT 2 cut(s) 187, 308
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 1 cut(s) 207
MseI TTAA 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 75, 83
MvaI CCWGG 2 cut(s) 75, 83
MvnI CGCG 1 cut(s) 171
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 293
NruI TCGCGA 1 cut(s) 171
NspI RCATGY 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 73, 81
PspGI CCWGG 2 cut(s) 73, 81
PstNI CAGNNNCTG 1 cut(s) 205
RruI TCGCGA 1 cut(s) 171
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 75, 83
SetI ASST 4 cut(s) 69, 157, 207, 247
SfaNI GCATC 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 2 cut(s) 187, 308
SsiI CCGC 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 73, 81
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 212
TasI AATT 2 cut(s) 187, 308
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 311
XceI RCATGY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.