Rmu_sc0002200.1_g000056

Nucleolar protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002200.1
OG0018482
Physical Location & Seq
Reverse (-)
258254 .. 260345
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002200.1_g000056.1.cds

Sequence Viewer

Length: 450 bp
atgccaggtcgcacgacgagatgggagtatcttgatccgtggggtgcggcaacctttgcaagtgcaacgtactggtgcaactttgcagggtgcactgatgcaaccccgataccatttgctaaattcattgctcaccgaagtgaactacaaatcaagaccccgacatctcttctgctttgtccaggactccagggtagagactacgatccagaccgtgaacgggttgagagaaagaagttgaagaagcgtttgacacaagaaggtaaatgtgctgttcgcgaagtgcgtaaagataattatttcttacaggagctgaagtcgagggataaggctctgatggaagaagaaagagctgagaaatgtggaaaagaaagacttttcctacaagagcgagaacatgctatgaaatctgggcaattaggaaaaggcagggggaagagaagaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop14

Protein Analysis

149

Amino Acids

17.37

Weight (kDa)

9.73

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018482)

Species Orthologous Gene IDs
malus_domestica MD13G1058800.v1.1
pyrus_communis pycom13g05240
rosa_chinensis RchiOBHm_Chr1g0340811
rosa_laevigata RLG00000029046
rosa_multiflora Rmu_co8097760.1_g000001 Rmu_sc0002200.1_g000056
rosa_roxburghii Rroxscaffold_4G00311500
rosa_samantha Rh1BG144200 Rh1CG164000 Rh1DG175900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AciI CCGC 1 cut(s) 47
AclWI GGATC 2 cut(s) 29, 200
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 3 cut(s) 4, 181, 189
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 2 cut(s) 313, 353
AluI AGCT 2 cut(s) 313, 353
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 192
Alw44I GTGCAC 1 cut(s) 91
AlwI GGATC 2 cut(s) 29, 200
AlwNI CAGNNNCTG 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 95
BccI CCATC 2 cut(s) 15, 331
BciT130I CCWGG 3 cut(s) 6, 183, 191
BcoDI GTCTC 1 cut(s) 192
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 6, 183, 191
BmrFI CCNGG 3 cut(s) 6, 183, 191
BmsI GCATC 1 cut(s) 88
BpmI CTGGAG 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 38, 190
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 126
BseBI CCWGG 3 cut(s) 6, 183, 191
BseDI CCNNGG 2 cut(s) 38, 190
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 34, 205
Bsp68I TCGCGA 1 cut(s) 279
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 279
BspPI GGATC 2 cut(s) 29, 200
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 38, 190
BssMI GATC 2 cut(s) 34, 205
Bst2UI CCWGG 3 cut(s) 6, 183, 191
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 174, 431
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 279
BstKTI GATC 2 cut(s) 37, 208
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 34, 205
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 3 cut(s) 6, 183, 191
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 3 cut(s) 4, 181, 189
BstSLI GKGCMC 1 cut(s) 95
BstUI CGCG 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 93
BtuMI TCGCGA 1 cut(s) 279
CaiI CAGNNNCTG 1 cut(s) 313
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 398
CviJI RGCY 3 cut(s) 313, 332, 353
CviKI_1 RGCY 3 cut(s) 313, 332, 353
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 354
DpnI GATC 2 cut(s) 36, 207
DpnII GATC 2 cut(s) 34, 205
Eam1104I CTCTTC 2 cut(s) 174, 431
EarI CTCTTC 2 cut(s) 174, 431
Eco57I CTGAAG 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 4, 181, 189
FaeI CATG 1 cut(s) 401
FaiI YATR 2 cut(s) 399, 404
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FatI CATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 173
Hin1II CATG 1 cut(s) 401
HinfI GANTC 1 cut(s) 186
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 93, 143, 218
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 4 cut(s) 32, 154, 209, 278
Hpy8I GTNNAC 3 cut(s) 93, 143, 218
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 59, 65, 78, 86, 93, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 1 cut(s) 401
Kzo9I GATC 2 cut(s) 34, 205
LmnI GCTCC 1 cut(s) 310
LweI GCATC 1 cut(s) 88
MaeII ACGT 1 cut(s) 68
MalI GATC 2 cut(s) 36, 207
MboI GATC 2 cut(s) 34, 205
MboII GAAGA 5 cut(s) 161, 253, 353, 356, 448
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 3 cut(s) 122, 295, 416
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 3 cut(s) 6, 183, 191
MvaI CCWGG 3 cut(s) 6, 183, 191
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 2 cut(s) 34, 205
NlaIII CATG 1 cut(s) 401
NruI TCGCGA 1 cut(s) 279
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 4, 181, 189
PspGI CCWGG 3 cut(s) 4, 181, 189
PstNI CAGNNNCTG 1 cut(s) 313
RruI TCGCGA 1 cut(s) 279
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 138
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 34, 205
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 3 cut(s) 6, 183, 191
SduI GDGCHC 1 cut(s) 95
SetI ASST 6 cut(s) 10, 56, 71, 265, 315, 355
SfaNI GCATC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 138
Sse9I AATT 3 cut(s) 122, 295, 416
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 4, 181, 189
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 71
TaqI TCGA 1 cut(s) 320
TasI AATT 3 cut(s) 122, 295, 416
TauI GCSGC 1 cut(s) 50
TscAI CASTG 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 115, 419
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 91
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.