Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0021588

Physical Location & Seq

Genomic Coordinates Reverse (-)

57149813 .. 57150232

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030184

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGTGTGGCTACTGTCTCTCCTATTTTGCATAATATCGATAACCTTGTTGGGTATCTTAAGAGGGGAAGATGGTTAGATTGTGATTACAGTGACTTGGGATTCATAGATGAGAGGACAAAGAGGCCTAAGATAGAAGCTAATCTGGGAGTTCCAGAAGAGGCAAGATTTTCTTCTGATGAAATTTCCAGGTCTTGTGGTGTGAGACTTGGGTACATACCCAAGGGATTGGGGCTTAATGATGATGTAATCGATCGATTAAGCAACGAAAGCAATAAAAACTTATTGTTCAACCATAAGAAACTTCATTTGGTTCTTGATCTAGACCACACCCTGCTGAATACCACCTTCCTTGATAATATGTCGCCAGACGAAGAATATTTGAAGACCCAAACCCAATCTGATCATTCTCTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

140

Amino Acids

15.81

Weight (kDa)

5.28

Isoelectric Point (pI)

63.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021588)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030184
rosa_multiflora	Rmu_co8021052.1_g000001 Rmu_sc0001425.1_g000010 Rmu_sc0001598.1_g000001
rosa_samantha	Rh1DG069100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	183
AfaI	GTAC	1 cut(s)	215
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	292, 385
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	2 cut(s)	22, 199
AoxI	GGCC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	392
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	190
BclI	TGATCA	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	22, 199
BfaI	CTAG	1 cut(s)	323
BfrI	CTTAAG	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	392
Bsa29I	ATCGAT	3 cut(s)	39, 252, 256
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	190
BseCI	ATCGAT	3 cut(s)	39, 252, 256
BseDI	CCNNGG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	127
BshVI	ATCGAT	3 cut(s)	39, 252, 256
BsiEI	CGRYCG	1 cut(s)	256
BsmAI	GTCTC	2 cut(s)	22, 199
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	253, 319, 403
BspANI	GGCC	1 cut(s)	127
BspDI	ATCGAT	3 cut(s)	39, 252, 256
BspTI	CTTAAG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	253, 319, 403
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	16, 92
Bst6I	CTCTTC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	256, 322, 406
BstMAI	GTCTC	2 cut(s)	22, 199
BstMBI	GATC	3 cut(s)	253, 319, 403
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	392
BstXI	CCANNNNNNTGG	1 cut(s)	229
Bsu15I	ATCGAT	3 cut(s)	39, 252, 256
BsuRI	GGCC	1 cut(s)	127
BsuTUI	ATCGAT	3 cut(s)	39, 252, 256
BtsIMutI	CAGTG	1 cut(s)	97
ClaI	ATCGAT	3 cut(s)	39, 252, 256
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviJI	RGCY	4 cut(s)	11, 127, 140, 235
CviKI_1	RGCY	4 cut(s)	11, 127, 140, 235
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	3 cut(s)	255, 321, 405
DpnII	GATC	3 cut(s)	253, 319, 403
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaiI	YATR	5 cut(s)	33, 107, 218, 297, 362
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FbaI	TGATCA	1 cut(s)	403
FspBI	CTAG	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	102
Hpy188I	TCNGA	2 cut(s)	178, 403
Hpy188III	TCNNGA	3 cut(s)	155, 317, 323
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	16, 92
HpyCH4V	TGCA	2 cut(s)	31, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	253, 319, 403
LpnPI	CCDG	6 cut(s)	131, 168, 175, 202, 347, 381
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	3 cut(s)	255, 321, 405
MboI	GATC	3 cut(s)	253, 319, 403
MboII	GAAGA	5 cut(s)	81, 165, 170, 386, 397
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	4 cut(s)	57, 108, 117, 154
MseI	TTAA	3 cut(s)	60, 237, 260
MspCI	CTTAAG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	3 cut(s)	253, 319, 403
NmuCI	GTSAC	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	102
Ple19I	CGATCG	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PvuI	CGATCG	1 cut(s)	256
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	60, 237, 260
Sau3AI	GATC	3 cut(s)	253, 319, 403
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	4 cut(s)	48, 142, 194, 350
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	183
SseBI	AGGCCT	1 cut(s)	127
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	16, 92
TaqI	TCGA	3 cut(s)	39, 252, 256
TasI	AATT	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	3 cut(s)	60, 237, 260
Tru9I	TTAA	3 cut(s)	60, 237, 260
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	94, 195, 296
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	322
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.