Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0021588

Physical Location & Seq

Genomic Coordinates Forward (+)

12268898 .. 12274370

Gene Structure 5473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG069100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGATGAGTGTGGCTACTGTCTCTCCGATTTTGCATAATATCGATAACCTTGTTGGGTATCTCAAGAGGGGAAGAGGGTTAGATTGTGATTACAGTGACTTGGGATTCATAGATGAGAGGACAAAGAGGCCTAAGATAGGAGCTAATCTGGGAGTTCCAGAAGAGGCAAGATTTGCTTCTGATGAAATTTACAGGTCTTGTGGTTTGAGACTTGGGTACATACCCAAGAGATTGGGGCTTAATGATGATGTAATCGATCGATTACGCAACGAAAACACTAAAAACTTATTGTTGAACCATAAGAAACTTCATTTGGTTCTTGATCTAGACCACACCCTGCTGAATACCACCTTCCTTGATAATATGTCACCAGACGAAGAATATTTGAAGACCCAAACCCAATCTGATCATTCTCTGCAATATGTTCACATTGTGGACACTCCCAGTATGGAACTGATGACCAAGTTGAGGCCTTATATTAGGACGTTTTTAGTGCAAGCCAGTCAAATGTTTGAGCTGTCCATATACACAATGGGTAATCGAGCCTATGCGCTCGAAATGGCTAAGCTGCTTGACCCTGGAAATCAAATCTTTGGTGGTAGAGTCATATCGCGTAGTGATAGCACAGAAACAGATCGAAAGCATCTAGATGTCCTGCTTGTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

222

Amino Acids

25.36

Weight (kDa)

6.16

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	104 - 216	1.9e-17	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021588)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030184
rosa_multiflora	Rmu_co8021052.1_g000001 Rmu_sc0001425.1_g000010 Rmu_sc0001598.1_g000001
rosa_samantha	Rh1DG069100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	613
AcsI	RAATTY	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	137, 468
AgsI	TTSAA	2 cut(s)	295, 388
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	3 cut(s)	143, 517, 568
AluI	AGCT	3 cut(s)	143, 517, 568
Alw26I	GTCTC	2 cut(s)	25, 202
AoxI	GGCC	2 cut(s)	128, 470
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	553
AsuHPI	GGTGA	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	579
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	25, 202
BfaI	CTAG	2 cut(s)	326, 647
BisI	GCNGC	1 cut(s)	569
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	579
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	3 cut(s)	42, 255, 259
BsaJI	CCNNGG	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 468
Bse1I	ACTGG	2 cut(s)	444, 501
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	3 cut(s)	42, 255, 259
BseDI	CCNNGG	1 cut(s)	577
BseLI	CCNNNNNNNGG	2 cut(s)	137, 468
BseNI	ACTGG	2 cut(s)	444, 501
BseXI	GCAGC	1 cut(s)	555
Bsh1236I	CGCG	1 cut(s)	613
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	130, 472
BshVI	ATCGAT	3 cut(s)	42, 255, 259
BsiEI	CGRYCG	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	137, 468
BsmAI	GTCTC	2 cut(s)	25, 202
BsnI	GGCC	2 cut(s)	130, 472
Bsp143I	GATC	4 cut(s)	256, 322, 406, 634
Bsp1720I	GCTNAGC	1 cut(s)	564
BspANI	GGCC	2 cut(s)	130, 472
BspDI	ATCGAT	3 cut(s)	42, 255, 259
BspFNI	CGCG	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	444, 501
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	4 cut(s)	256, 322, 406, 634
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	2 cut(s)	19, 95
Bst6I	CTCTTC	2 cut(s)	67, 156
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	132, 564
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	4 cut(s)	259, 325, 409, 637
BstMAI	GTCTC	2 cut(s)	25, 202
BstMBI	GATC	4 cut(s)	256, 322, 406, 634
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	577
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	555
BstV2I	GAAGAC	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	232
Bsu15I	ATCGAT	3 cut(s)	42, 255, 259
BsuRI	GGCC	2 cut(s)	130, 472
BsuTUI	ATCGAT	3 cut(s)	42, 255, 259
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	1 cut(s)	553
ClaI	ATCGAT	3 cut(s)	42, 255, 259
Csp6I	GTAC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	132, 564
DpnI	GATC	4 cut(s)	258, 324, 408, 636
DpnII	GATC	4 cut(s)	256, 322, 406, 634
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	67, 156
EarI	CTCTTC	2 cut(s)	67, 156
Eco147I	AGGCCT	2 cut(s)	130, 472
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	577
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	2 cut(s)	326, 647
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	569
HaeIII	GGCC	2 cut(s)	130, 472
HhaI	GCGC	1 cut(s)	553
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	2 cut(s)	105, 603
HpaI	GTTAAC	1 cut(s)	664
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	3 cut(s)	427, 436, 664
Hpy188I	TCNGA	3 cut(s)	27, 181, 406
Hpy188III	TCNNGA	5 cut(s)	64, 158, 320, 326, 647
Hpy8I	GTNNAC	3 cut(s)	427, 436, 664
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	2 cut(s)	19, 95
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	3 cut(s)	34, 418, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	132, 564
HpySE526I	ACGT	1 cut(s)	485
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	406
KspAI	GTTAAC	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	256, 322, 406, 634
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	9 cut(s)	134, 171, 178, 350, 384, 457, 514, 564, 591
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	326, 647
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	2 cut(s)	95, 366
MalI	GATC	4 cut(s)	258, 324, 408, 636
MboI	GATC	4 cut(s)	256, 322, 406, 634
MboII	GAAGA	4 cut(s)	84, 173, 389, 400
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	612
MnlI	CCTC	6 cut(s)	60, 68, 111, 120, 157, 462
MseI	TTAA	2 cut(s)	240, 663
MslI	CAYNNNNRTG	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	4 cut(s)	256, 322, 406, 634
NmuCI	GTSAC	2 cut(s)	95, 366
PceI	AGGCCT	2 cut(s)	130, 472
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	570
Ple19I	CGATCG	1 cut(s)	259
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PvuI	CGATCG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	648
SaqAI	TTAA	2 cut(s)	240, 663
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	4 cut(s)	256, 322, 406, 634
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	1 cut(s)	579
SetI	ASST	7 cut(s)	51, 145, 197, 353, 488, 519, 570
SfaNI	GCATC	1 cut(s)	652
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	186
SseBI	AGGCCT	2 cut(s)	130, 472
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	2 cut(s)	326, 647
StuI	AGGCCT	2 cut(s)	130, 472
StyD4I	CCNGG	1 cut(s)	577
TaaI	ACNGT	2 cut(s)	19, 95
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	6 cut(s)	42, 255, 259, 541, 555, 637
TasI	AATT	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	2 cut(s)	240, 663
Tru9I	TTAA	2 cut(s)	240, 663
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	95, 366
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	2 cut(s)	95, 366
TspDTI	ATGAA	3 cut(s)	97, 198, 299
TspRI	CASTG	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	186
XbaI	TCTAGA	2 cut(s)	325, 646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XspI	CTAG	2 cut(s)	326, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.