Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8021052.1

Orthogroup ID

OG0021588

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 501

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8021052.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

atgagtgtggctactgtgtctccgattttacataatattgataaccgtgttgggtatcttaagaggggacgagggttagattctgattacagtgacctaggagtgatagatcagagggccaaaaggcttaaggtagagactgatgtgctgggagtttcagaagaggctgggtttgcttttgatgaaaaacccaggttttctgaagtgagatttgggtatatacctaaggggttagtgcttagggatgatgaaattgatcgattatgcaacgaaaacactaggaatctattgttgaaccataagaaacttcatctggttcttgatctagaccacaccctcctgaataccactttccttgatgagatgtcacccgacgaagaatatctgaagacccaaacccaggctgatcattctctgcagtatgttcacgttgttgacactcccagtaggcaattgatgaccaagttgaggccttatatcaggacgtttttggtgcaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

167

Amino Acids

19.23

Weight (kDa)

5.85

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021588)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030184
rosa_multiflora	Rmu_co8021052.1_g000001 Rmu_sc0001425.1_g000010 Rmu_sc0001598.1_g000001
rosa_samantha	Rh1DG069100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	222, 407
AfiI	CCNNNNNNNGG	2 cut(s)	400, 468
AflII	CTTAAG	2 cut(s)	59, 128
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	191, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
Alw26I	GTCTC	2 cut(s)	24, 131
AoxI	GGCC	2 cut(s)	117, 470
AspA2I	CCTAGG	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	360
AvrII	CCTAGG	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	395
BciT130I	CCWGG	2 cut(s)	193, 401
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	24, 131
BfaI	CTAG	3 cut(s)	98, 279, 326
BfmI	CTRYAG	1 cut(s)	416
BfrI	CTTAAG	2 cut(s)	59, 128
BlnI	CCTAGG	1 cut(s)	97
Bme1390I	CCNGG	2 cut(s)	193, 401
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	193, 401
BmrI	ACTGGG	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	97, 191, 399
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 468
Bse1I	ACTGG	1 cut(s)	444
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	193, 401
BseCI	ATCGAT	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	97, 191, 399
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	400, 468
BseNI	ACTGG	1 cut(s)	444
BseYI	CCCAGC	2 cut(s)	148, 167
BshFI	GGCC	2 cut(s)	119, 472
BshVI	ATCGAT	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	400, 468
BsmAI	GTCTC	2 cut(s)	24, 131
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	119, 472
Bsp143I	GATC	4 cut(s)	109, 256, 322, 406
BspANI	GGCC	2 cut(s)	119, 472
BspDI	ATCGAT	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	420
BspTI	CTTAAG	2 cut(s)	59, 128
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	3 cut(s)	97, 191, 399
BssMI	GATC	4 cut(s)	109, 256, 322, 406
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	2 cut(s)	193, 401
Bst4CI	ACNGT	3 cut(s)	16, 47, 92
Bst6I	CTCTTC	1 cut(s)	156
BstAFI	CTTAAG	2 cut(s)	59, 128
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	2 cut(s)	225, 239
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	4 cut(s)	112, 259, 325, 409
BstMAI	GTCTC	2 cut(s)	24, 131
BstMBI	GATC	4 cut(s)	109, 256, 322, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	193, 401
BstSCI	CCNGG	2 cut(s)	191, 399
BstSFI	CTRYAG	1 cut(s)	416
BstV2I	GAAGAC	1 cut(s)	395
Bsu15I	ATCGAT	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	119, 472
BsuTUI	ATCGAT	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviJI	RGCY	6 cut(s)	11, 119, 127, 167, 404, 472
CviKI_1	RGCY	6 cut(s)	11, 119, 127, 167, 404, 472
DdeI	CTNAG	2 cut(s)	225, 239
DpnI	GATC	4 cut(s)	111, 258, 324, 408
DpnII	GATC	4 cut(s)	109, 256, 322, 406
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	222, 407
Eco81I	CCTNAGG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	191, 399
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaiI	YATR	7 cut(s)	33, 219, 221, 265, 300, 423, 477
FaqI	GGGAC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	406
FokI	GGATG	1 cut(s)	257
FspBI	CTAG	3 cut(s)	98, 279, 326
GsaI	CCCAGC	2 cut(s)	152, 171
HaeIII	GGCC	2 cut(s)	119, 472
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	80, 283
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	427, 436
Hpy188I	TCNGA	6 cut(s)	24, 85, 114, 160, 202, 387
Hpy188III	TCNNGA	4 cut(s)	320, 326, 340, 481
Hpy8I	GTNNAC	2 cut(s)	427, 436
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	3 cut(s)	16, 47, 92
HpyCH4IV	ACGT	2 cut(s)	429, 485
HpyCH4V	TGCA	3 cut(s)	267, 418, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	225, 239
HpySE526I	ACGT	2 cut(s)	429, 485
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	109, 256, 322, 406
MaeI	CTAG	3 cut(s)	98, 279, 326
MaeII	ACGT	2 cut(s)	429, 485
MaeIII	GTNAC	2 cut(s)	92, 366
MalI	GATC	4 cut(s)	111, 258, 324, 408
MboI	GATC	4 cut(s)	109, 256, 322, 406
MboII	GAAGA	3 cut(s)	173, 389, 400
MfeI	CAATTG	1 cut(s)	452
MluCI	AATT	2 cut(s)	252, 452
MnlI	CCTC	6 cut(s)	57, 65, 108, 157, 347, 462
MseI	TTAA	2 cut(s)	60, 129
MspCI	CTTAAG	2 cut(s)	59, 128
MspR9I	CCNGG	2 cut(s)	193, 401
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	2 cut(s)	193, 401
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	4 cut(s)	109, 256, 322, 406
NmuCI	GTSAC	2 cut(s)	92, 366
PceI	AGGCCT	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	80, 283
Psp6I	CCWGG	2 cut(s)	191, 399
PspFI	CCCAGC	2 cut(s)	148, 167
PspGI	CCWGG	2 cut(s)	191, 399
PspPI	GGNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	60, 129
Sau3AI	GATC	4 cut(s)	109, 256, 322, 406
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	193, 401
SetI	ASST	6 cut(s)	99, 135, 197, 226, 432, 488
SfcI	CTRYAG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	59, 128
SmoI	CTYRAG	2 cut(s)	59, 128
Sse9I	AATT	2 cut(s)	252, 452
SseBI	AGGCCT	1 cut(s)	472
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	3 cut(s)	98, 279, 326
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	191, 399
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	16, 47, 92
TaiI	ACGT	2 cut(s)	432, 488
TaqI	TCGA	1 cut(s)	259
TasI	AATT	2 cut(s)	252, 452
TfiI	GAWTC	2 cut(s)	80, 283
Tru1I	TTAA	2 cut(s)	60, 129
Tru9I	TTAA	2 cut(s)	60, 129
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	2 cut(s)	92, 366
Tsp45I	GTSAC	2 cut(s)	92, 366
TspDTI	ATGAA	3 cut(s)	198, 264, 299
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	2 cut(s)	59, 128
XbaI	TCTAGA	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	97
XspI	CTAG	3 cut(s)	98, 279, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.