Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001425.1

Orthogroup ID

OG0021588

Physical Location & Seq

Genomic Coordinates Reverse (-)

33140 .. 36022

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001425.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgagtgtggctactgtgtctccgattttacataatattgataaccgtgttgggtatcttaagaggggacgagggttagattctgattacagtgacctaggagtgatagatcagagggccaaaaggcttaaggtagagactgatgtgctgggagtttcagaagaggctaggtttgcttttgatgaaaaacccaggttttctgaagtgagatttgggtatatacctaaggggttagtgcttagggatgatgaaattgatcgattatgcaacgaaaacactaggaatctattgttgaaccataagaaacttcatctggttcttgatctagaccacaccctgctgaataccactttccttgatgagatgtcacccgaagaagaatatctgaagacccaaacccagtctgatcattctctgcagtatgttcacgttgttgacactcccagtaggcaattgatgaccaagttgaggccttatatcaggacgtttttggtgcaagccagtcaaatgtttgagctgtccatatacacaatgggtaatcgagattatgcgctagaaatggctaagctgcttgatccaggaaatcatatctttggtggtagagtcatatcgcgtgatgatagcacagaaacagatagaaagaatttgtctagtgccgtctcggctcacttcttgttgaaggaaaggctacaacaatcaggagcatgcactttggttgtacattttgaacctccctatgggctaacaagcatactagtctacttggaatctgtcattacggaaaatatacttctcttggttcccaactacatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

271

Amino Acids

31.02

Weight (kDa)

5.73

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021588)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030184
rosa_multiflora	Rmu_co8021052.1_g000001 Rmu_sc0001425.1_g000010 Rmu_sc0001598.1_g000001
rosa_samantha	Rh1DG069100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	759
AccII	CGCG	1 cut(s)	613
AclWI	GGATC	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	222, 407
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	2 cut(s)	468, 737
AflII	CTTAAG	2 cut(s)	59, 128
AgsI	TTSAA	3 cut(s)	295, 679, 728
AhlI	ACTAGT	1 cut(s)	754
AjnI	CCWGG	2 cut(s)	191, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	2 cut(s)	517, 568
AluI	AGCT	2 cut(s)	517, 568
Alw26I	GTCTC	3 cut(s)	24, 131, 664
AlwI	GGATC	1 cut(s)	569
AoxI	GGCC	2 cut(s)	117, 470
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	643
AspA2I	CCTAGG	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	360
AvrII	CCTAGG	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	555
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	2 cut(s)	193, 579
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	24, 131, 664
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	8 cut(s)	98, 168, 279, 326, 554, 651, 755, 814
BfmI	CTRYAG	1 cut(s)	416
BfrI	CTTAAG	2 cut(s)	59, 128
BglI	GCCNNNNNGGC	1 cut(s)	662
BisI	GCNGC	1 cut(s)	569
BlnI	CCTAGG	1 cut(s)	97
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	2 cut(s)	193, 579
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	801
BmrFI	CCNGG	2 cut(s)	193, 579
BmrI	ACTGGG	2 cut(s)	394, 438
BmuI	ACTGGG	2 cut(s)	394, 438
BpiI	GAAGAC	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	564
Bsa29I	ATCGAT	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	97, 191
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 737
Bse1I	ACTGG	3 cut(s)	400, 444, 501
Bse21I	CCTNAGG	1 cut(s)	225
BseBI	CCWGG	2 cut(s)	193, 579
BseCI	ATCGAT	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	97, 191
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	468, 737
BseNI	ACTGG	3 cut(s)	400, 444, 501
BseXI	GCAGC	1 cut(s)	555
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	119, 472
BshVI	ATCGAT	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	468, 737
BsmAI	GTCTC	3 cut(s)	24, 131, 664
BsmBI	CGTCTC	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	119, 472
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	5 cut(s)	109, 256, 322, 406, 574
Bsp1720I	GCTNAGC	1 cut(s)	564
BspANI	GGCC	2 cut(s)	119, 472
BspDI	ATCGAT	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	1 cut(s)	801
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	569
BspTI	CTTAAG	2 cut(s)	59, 128
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	3 cut(s)	400, 444, 501
BssECI	CCNNGG	2 cut(s)	97, 191
BssMI	GATC	5 cut(s)	109, 256, 322, 406, 574
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	2 cut(s)	193, 579
Bst4CI	ACNGT	3 cut(s)	16, 47, 92
Bst6I	CTCTTC	1 cut(s)	156
BstAFI	CTTAAG	2 cut(s)	59, 128
BstAUI	TGTACA	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	498, 706
BstDEI	CTNAG	3 cut(s)	225, 239, 564
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	5 cut(s)	112, 259, 325, 409, 577
BstMAI	GTCTC	3 cut(s)	24, 131, 664
BstMBI	GATC	5 cut(s)	109, 256, 322, 406, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 662
BstNI	CCWGG	2 cut(s)	193, 579
BstNSI	RCATGY	1 cut(s)	708
BstSCI	CCNGG	2 cut(s)	191, 577
BstSFI	CTRYAG	1 cut(s)	416
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	555
BstV2I	GAAGAC	1 cut(s)	395
Bsu15I	ATCGAT	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	119, 472
BsuTUI	ATCGAT	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	498, 706
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	719
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	1 cut(s)	705
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	3 cut(s)	225, 239, 564
DpnI	GATC	5 cut(s)	111, 258, 324, 408, 576
DpnII	GATC	5 cut(s)	109, 256, 322, 406, 574
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	472
Eco57I	CTGAAG	2 cut(s)	222, 407
Eco81I	CCTNAGG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	191, 577
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
Esp3I	CGTCTC	1 cut(s)	664
FaeI	CATG	1 cut(s)	708
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	1 cut(s)	704
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	8 cut(s)	98, 168, 279, 326, 554, 651, 755, 814
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	569
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	119, 472
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	1 cut(s)	708
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	4 cut(s)	80, 283, 603, 767
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	3 cut(s)	427, 436, 760
Hpy188I	TCNGA	7 cut(s)	24, 85, 114, 160, 202, 387, 406
Hpy188III	TCNNGA	5 cut(s)	320, 326, 481, 542, 699
Hpy8I	GTNNAC	3 cut(s)	427, 436, 760
HpyAV	CCTTC	1 cut(s)	673
HpyCH4III	ACNGT	3 cut(s)	16, 47, 92
HpyCH4IV	ACGT	2 cut(s)	429, 485
HpyCH4V	TGCA	4 cut(s)	267, 418, 496, 708
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 662
HpyF3I	CTNAG	3 cut(s)	225, 239, 564
HpySE526I	ACGT	2 cut(s)	429, 485
Hsp92II	CATG	1 cut(s)	708
HspAI	GCGC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	109, 256, 322, 406, 574
LmnI	GCTCC	1 cut(s)	701
Lsp1109I	GCAGC	1 cut(s)	555
MaeI	CTAG	8 cut(s)	98, 168, 279, 326, 554, 651, 755, 814
MaeII	ACGT	2 cut(s)	429, 485
MaeIII	GTNAC	2 cut(s)	92, 366
MalI	GATC	5 cut(s)	111, 258, 324, 408, 576
MboI	GATC	5 cut(s)	109, 256, 322, 406, 574
MboII	GAAGA	4 cut(s)	173, 386, 389, 400
MfeI	CAATTG	1 cut(s)	452
MluCI	AATT	3 cut(s)	252, 452, 643
MlyI	GAGTC	1 cut(s)	612
MnlI	CCTC	6 cut(s)	57, 65, 108, 157, 462, 741
MseI	TTAA	2 cut(s)	60, 129
MspCI	CTTAAG	2 cut(s)	59, 128
MspR9I	CCNGG	2 cut(s)	193, 579
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	2 cut(s)	193, 579
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	2 cut(s)	173, 662
NdeII	GATC	5 cut(s)	109, 256, 322, 406, 574
NlaIII	CATG	1 cut(s)	708
NlaIV	GGNNCC	1 cut(s)	801
NmeAIII	GCCGAG	1 cut(s)	641
NmuCI	GTSAC	2 cut(s)	92, 366
NspI	RCATGY	1 cut(s)	708
PaeI	GCATGC	1 cut(s)	708
PceI	AGGCCT	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	80, 283, 767
PfoI	TCCNGGA	1 cut(s)	577
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	191, 577
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	191, 577
PspN4I	GGNNCC	1 cut(s)	801
PspPI	GGNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	420
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	60, 129
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	5 cut(s)	109, 256, 322, 406, 574
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	2 cut(s)	193, 579
SfcI	CTRYAG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	59, 128
SmoI	CTYRAG	2 cut(s)	59, 128
SpeI	ACTAGT	1 cut(s)	754
SphI	GCATGC	1 cut(s)	708
Sse9I	AATT	3 cut(s)	252, 452, 643
SseBI	AGGCCT	1 cut(s)	472
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	8 cut(s)	98, 168, 279, 326, 554, 651, 755, 814
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	191, 577
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	16, 47, 92
TaiI	ACGT	2 cut(s)	432, 488
TaqI	TCGA	2 cut(s)	259, 541
TasI	AATT	3 cut(s)	252, 452, 643
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	3 cut(s)	80, 283, 767
Tru1I	TTAA	2 cut(s)	60, 129
Tru9I	TTAA	2 cut(s)	60, 129
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	2 cut(s)	92, 366
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	2 cut(s)	92, 366
TspDTI	ATGAA	3 cut(s)	198, 264, 299
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	2 cut(s)	59, 128
XapI	RAATTY	1 cut(s)	643
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	708
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XmaJI	CCTAGG	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	759
XspI	CTAG	8 cut(s)	98, 168, 279, 326, 554, 651, 755, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.