Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018547

Physical Location & Seq

Genomic Coordinates Reverse (-)

63262503 .. 63264457

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030543

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTCGAACCTTAAGCTGACTAAAATATCAAGCAATATCAGCATAGGAGCTCCAAACCGCAGTTTCATTCTTGGTCTTTTCGCTCAAGAATTTAATTCTCGTTTGCAATCCGCAAATCCTCGGGGTGAACAAGAGTGTCTGCATGTGAAGTTTCCTATGCAAATGGATTGGGAGCACCTATATCCTAAAATGACATGTCCTTGTATCCCAAAGAAAATGACTTGTCCTCATCCTCCGTCGTCGTCCATTTCTTTCTTGTTATTCTTTGGATTGCGACAGGATCATTATTGCACTTGGACATGCCTCCCTCTGCTTTGGTGGGTGAAGAGTACTGCACCAAACATGTCTCTTACATTCTTCTCCAGGCAGGAGCTGGCCAAGGCCATCAACAACTTCTCTCCAAACTCCATTATCTGTGTAGGTGGATCCGGTCCGGTATACAAGGCTGAGCTCTCCAATGGCTCTACTGTGGCTTTGAAATATTTGGACTCAAATGCATTTGGAGGGTTCTCGTATATTCATGCTGAAATAAAAACATTAGGGAAGCTCCGCCATCCCAATCTTGTCAAGCTTCTAGGACGTTGCATGTCCAGTTCCGGCAGGTTTCTTGTTTATGAGTTCATCGAGAATGGTAGTCTCCACGAGTGGCTGCATGGACAGCGGGGAGTCCGAGATCCGATGGCATTGCCTTGGGAAACAAGAATGAAGATTGTGAAGGGTGTTGCTGATGCTCTTAAATATTTGCATGGATTGGAAAGACCCGTCATTCACAGGGATATAAAGGCCGGCCACGTGTTACTAGACTCTAATTTTGAGGCTCATCTTACTGATTTCGGGCTGGCTCGAATGCTGGAACCCTCAGAGACGCACTTGTCAACCTATATCAATGCTGGTTCTTTCTGGTATAGGCCACCGGAGTATTTATTCAGTGAGGCATCGTGGGCGACATTGAAAGGCGATGTATACAGCTTTGGAGTTTTGATGTTGGAGATAGCATCTGGGAGGCCTCCGAGTTCCATGGACATCCATCCTTCCTTCAGGTTACGGCTTCCTCAATGTGCCAAGAAGCTTGTTGCCCAAAAAATGCACATGGATTTAGTGGATTCAAGGATTTTGAGGCAGAAATTAAACGAAGCTAGTGTTATAGAGTATTTTAGGATTGCTCTTAGTTGTCTCAAGAAAGACCCCAAGAAAAGACCTGAAATGAGTGAGGTTGTACAAATATTGAATGAACTTCCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

415

Amino Acids

46.95

Weight (kDa)

9.18

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	136 - 407	1.7e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	140 - 409	1.1e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318351
rosa_laevigata	RLG00000030543
rosa_roxburghii	Rroxscaffold_4G00329290 Rroxscaffold_4G00329300
rosa_rugosa	Rorug01G0020700
rosa_samantha	Rh1AG032800 Rh1BG028600 Rh1CG031200 Rh1DG038300
rosa_wichuraiana	Rw1G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	871
Acc36I	ACCTGC	1 cut(s)	591
AccI	GTMKAC	2 cut(s)	438, 963
AciI	CCGC	4 cut(s)	58, 111, 550, 661
AclWI	GGATC	4 cut(s)	288, 420, 433, 668
AcoI	YGGCCR	2 cut(s)	375, 787
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	1021
AcvI	CACGTG	1 cut(s)	793
AfaI	GTAC	2 cut(s)	331, 1218
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	3 cut(s)	194, 342, 792
AgsI	TTSAA	4 cut(s)	478, 952, 1107, 1228
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	9 cut(s)	16, 50, 373, 451, 547, 571, 969, 1069, 1136
AluI	AGCT	9 cut(s)	16, 50, 373, 451, 547, 571, 969, 1069, 1136
Alw21I	GWGCWC	3 cut(s)	52, 177, 453
Alw26I	GTCTC	4 cut(s)	351, 641, 857, 1178
AlwI	GGATC	4 cut(s)	288, 420, 433, 668
AlwNI	CAGNNNCTG	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	6 cut(s)	375, 381, 783, 787, 908, 1004
ApeKI	GCWGC	1 cut(s)	649
ApoI	RAATTY	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
AspS9I	GGNCC	1 cut(s)	431
AsuHPI	GGTGA	2 cut(s)	137, 334
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	377
BamHI	GGATCC	1 cut(s)	425
BanII	GRGCYC	2 cut(s)	52, 453
BauI	CACGAG	1 cut(s)	641
BbrPI	CACGTG	1 cut(s)	793
Bbv12I	GWGCWC	3 cut(s)	52, 177, 453
BbvI	GCAGC	1 cut(s)	636
BccI	CCATC	4 cut(s)	392, 561, 673, 1035
BceAI	ACGGC	1 cut(s)	1061
BcgI	CGANNNNNNTGC	2 cut(s)	667, 701
BciT130I	CCWGG	1 cut(s)	364
BciVI	GTATCC	1 cut(s)	215
BcoDI	GTCTC	4 cut(s)	351, 641, 857, 1178
BfaI	CTAG	3 cut(s)	575, 800, 1137
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	1 cut(s)	650
BlpI	GCTNAGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	651
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	2 cut(s)	427, 855
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	3 cut(s)	718, 944, 1004
BpmI	CTGGAG	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	69, 1160
BsaAI	YACGTR	1 cut(s)	793
BsaJI	CCNNGG	4 cut(s)	119, 378, 689, 1017
BsaWI	WCCGGW	3 cut(s)	428, 433, 913
Bse118I	RCCGGY	1 cut(s)	785
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	4 cut(s)	119, 378, 689, 1017
BseGI	GGATG	4 cut(s)	229, 553, 1023, 1027
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	438, 873
BseNI	ACTGG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	636
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	6 cut(s)	377, 383, 785, 789, 910, 1006
BsiHKAI	GWGCWC	3 cut(s)	52, 177, 453
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	5 cut(s)	429, 434, 597, 786, 914
BsmAI	GTCTC	4 cut(s)	351, 641, 857, 1178
BsmBI	CGTCTC	1 cut(s)	857
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	6 cut(s)	377, 383, 785, 789, 910, 1006
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	52, 177, 453
Bsp1407I	TGTACA	1 cut(s)	1216
Bsp143I	GATC	3 cut(s)	280, 425, 673
Bsp1720I	GCTNAGC	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	1017
BspACI	CCGC	4 cut(s)	58, 111, 550, 661
BspANI	GGCC	6 cut(s)	377, 383, 785, 789, 910, 1006
BspCNI	CTCAG	2 cut(s)	439, 872
BspLI	GGNNCC	2 cut(s)	427, 855
BspMI	ACCTGC	1 cut(s)	591
BspPI	GGATC	4 cut(s)	288, 420, 433, 668
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	785
BsrGI	TGTACA	1 cut(s)	1216
BsrI	ACTGG	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	785
BssECI	CCNNGG	4 cut(s)	119, 378, 689, 1017
BssMI	GATC	3 cut(s)	280, 425, 673
BssNAI	GTATAC	2 cut(s)	439, 964
BssSI	CACGAG	1 cut(s)	641
BssT1I	CCWWGG	3 cut(s)	378, 689, 1017
Bst1107I	GTATAC	2 cut(s)	439, 964
Bst2BI	CACGAG	1 cut(s)	641
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	1216
BstBAI	YACGTR	1 cut(s)	793
BstC8I	GCNNGC	3 cut(s)	375, 787, 840
BstDEI	CTNAG	3 cut(s)	447, 859, 1166
BstDSI	CCRYGG	1 cut(s)	1017
BstF5I	GGATG	4 cut(s)	229, 553, 1023, 1027
BstKTI	GATC	3 cut(s)	283, 428, 676
BstMAI	GTCTC	4 cut(s)	351, 641, 857, 1178
BstMBI	GATC	3 cut(s)	280, 425, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 658, 941
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	5 cut(s)	146, 198, 303, 346, 589
BstSCI	CCNGG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	636
BstX2I	RGATCY	2 cut(s)	425, 673
BstYI	RGATCY	2 cut(s)	425, 673
BstZ17I	GTATAC	2 cut(s)	439, 964
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	6 cut(s)	377, 383, 785, 789, 910, 1006
BtgI	CCRYGG	1 cut(s)	1017
BtgZI	GCGATG	1 cut(s)	972
BtsCI	GGATG	4 cut(s)	229, 553, 1023, 1027
BtsIMutI	CAGTG	1 cut(s)	934
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	375, 787, 840
CaiI	CAGNNNCTG	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	785
Cfr13I	GGNCC	1 cut(s)	431
CpoI	CGGWCCG	1 cut(s)	431
CseI	GACGC	1 cut(s)	874
Csp6I	GTAC	2 cut(s)	330, 1217
CspI	CGGWCCG	1 cut(s)	431
CviQI	GTAC	2 cut(s)	330, 1217
DdeI	CTNAG	3 cut(s)	447, 859, 1166
DpnI	GATC	3 cut(s)	282, 427, 675
DpnII	GATC	3 cut(s)	280, 425, 673
DrdI	GACNNNNNNGTC	1 cut(s)	871
DseDI	GACNNNNNNGTC	1 cut(s)	871
EaeI	YGGCCR	2 cut(s)	375, 787
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EciI	GGCGGA	1 cut(s)	539
Ecl136II	GAGCTC	2 cut(s)	50, 451
Eco130I	CCWWGG	3 cut(s)	378, 689, 1017
Eco147I	AGGCCT	1 cut(s)	1006
Eco24I	GRGCYC	2 cut(s)	52, 453
Eco47I	GGWCC	1 cut(s)	431
Eco53kI	GAGCTC	2 cut(s)	50, 451
Eco57I	CTGAAG	1 cut(s)	1021
Eco72I	CACGTG	1 cut(s)	793
Eco88I	CYCGRG	1 cut(s)	120
EcoICRI	GAGCTC	2 cut(s)	50, 451
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	3 cut(s)	378, 689, 1017
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	2 cut(s)	52, 453
ErhI	CCWWGG	3 cut(s)	378, 689, 1017
Esp3I	CGTCTC	1 cut(s)	857
FauI	CCCGC	1 cut(s)	654
FblI	GTMKAC	2 cut(s)	438, 963
Fnu4HI	GCNGC	1 cut(s)	650
FokI	GGATG	4 cut(s)	216, 540, 1010, 1014
FriOI	GRGCYC	2 cut(s)	52, 453
FseI	GGCCGGCC	1 cut(s)	789
Fsp4HI	GCNGC	1 cut(s)	650
FspBI	CTAG	3 cut(s)	575, 800, 1137
GluI	GCNGC	1 cut(s)	650
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	6 cut(s)	377, 383, 785, 789, 910, 1006
HapII	CCGG	5 cut(s)	429, 434, 597, 786, 914
HgaI	GACGC	1 cut(s)	874
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HindIII	AAGCTT	2 cut(s)	569, 1067
HinfI	GANTC	4 cut(s)	488, 666, 803, 1103
HpaII	CCGG	5 cut(s)	429, 434, 597, 786, 914
HphI	GGTGA	2 cut(s)	137, 334
Hpy166II	GTNNAC	4 cut(s)	128, 439, 876, 964
Hpy188I	TCNGA	4 cut(s)	671, 678, 862, 1011
Hpy188III	TCNNGA	3 cut(s)	86, 625, 1177
Hpy8I	GTNNAC	4 cut(s)	128, 439, 876, 964
Hpy99I	CGWCG	2 cut(s)	241, 244
HpyAV	CCTTC	3 cut(s)	709, 1041, 1045
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	580, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 658, 941
HpyF3I	CTNAG	3 cut(s)	447, 859, 1166
HpySE526I	ACGT	2 cut(s)	580, 792
KroI	GCCGGC	1 cut(s)	785
KroNI	GCCGGC	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	280, 425, 673
LmnI	GCTCC	5 cut(s)	47, 55, 172, 370, 552
Lsp1109I	GCAGC	1 cut(s)	636
LweI	GCATC	3 cut(s)	718, 944, 1004
MaeI	CTAG	3 cut(s)	575, 800, 1137
MaeII	ACGT	2 cut(s)	580, 792
MaeIII	GTNAC	2 cut(s)	795, 1041
MalI	GATC	3 cut(s)	282, 427, 675
MboI	GATC	3 cut(s)	280, 425, 673
MboII	GAAGA	3 cut(s)	337, 349, 718
MflI	RGATCY	2 cut(s)	425, 673
MhlI	GDGCHC	3 cut(s)	52, 177, 453
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	89, 94, 808, 1124
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	3 cut(s)	482, 675, 797
MmeI	TCCRAC	1 cut(s)	966
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	499
MroNI	GCCGGC	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	12, 93, 735, 1127
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	661
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	5 cut(s)	429, 434, 597, 786, 914
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	3 cut(s)	39, 658, 941
NaeI	GCCGGC	1 cut(s)	787
NcoI	CCATGG	1 cut(s)	1017
NdeII	GATC	3 cut(s)	280, 425, 673
NgoMIV	GCCGGC	1 cut(s)	785
NlaIV	GGNNCC	2 cut(s)	427, 855
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	5 cut(s)	146, 198, 303, 346, 589
PceI	AGGCCT	1 cut(s)	1006
PciI	ACATGT	2 cut(s)	194, 342
PctI	GAATGC	1 cut(s)	852
PdiI	GCCGGC	1 cut(s)	787
PfeI	GAWTC	1 cut(s)	1103
PkrI	GCNGC	1 cut(s)	651
PleI	GAGTC	3 cut(s)	482, 674, 797
PmaCI	CACGTG	1 cut(s)	793
PmlI	CACGTG	1 cut(s)	793
PpsI	GAGTC	3 cut(s)	482, 674, 797
Ppu21I	YACGTR	1 cut(s)	793
PscI	ACATGT	2 cut(s)	194, 342
Psp124BI	GAGCTC	2 cut(s)	52, 453
Psp6I	CCWGG	1 cut(s)	362
PspCI	CACGTG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	427, 855
PspPI	GGNCC	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	425, 673
RigI	GGCCGGCC	1 cut(s)	789
RsaI	GTAC	2 cut(s)	331, 1218
RsaNI	GTAC	2 cut(s)	330, 1217
Rsr2I	CGGWCCG	1 cut(s)	431
RsrII	CGGWCCG	1 cut(s)	431
SacI	GAGCTC	2 cut(s)	52, 453
SaqAI	TTAA	4 cut(s)	12, 93, 735, 1127
SatI	GCNGC	1 cut(s)	650
Sau3AI	GATC	3 cut(s)	280, 425, 673
Sau96I	GGNCC	1 cut(s)	431
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	3 cut(s)	482, 675, 797
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	3 cut(s)	52, 177, 453
SfaNI	GCATC	3 cut(s)	718, 944, 1004
SinI	GGWCC	1 cut(s)	431
SmlI	CTYRAG	3 cut(s)	11, 84, 1175
SmoI	CTYRAG	3 cut(s)	11, 84, 1175
Sse9I	AATT	4 cut(s)	89, 94, 808, 1124
SseBI	AGGCCT	1 cut(s)	1006
SsiI	CCGC	4 cut(s)	58, 111, 550, 661
SspI	AATATT	3 cut(s)	482, 740, 1224
SspMI	CTAG	3 cut(s)	575, 800, 1137
SstI	GAGCTC	2 cut(s)	52, 453
StuI	AGGCCT	1 cut(s)	1006
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	3 cut(s)	378, 689, 1017
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	2 cut(s)	583, 795
TaqI	TCGA	3 cut(s)	5, 624, 844
TasI	AATT	4 cut(s)	89, 94, 808, 1124
TatI	WGTACW	2 cut(s)	329, 1216
TfiI	GAWTC	1 cut(s)	1103
Tru1I	TTAA	4 cut(s)	12, 93, 735, 1127
Tru9I	TTAA	4 cut(s)	12, 93, 735, 1127
TscAI	CASTG	1 cut(s)	934
TseI	GCWGC	1 cut(s)	649
TspDTI	ATGAA	5 cut(s)	55, 509, 610, 719, 1245
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	934
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	5 cut(s)	146, 198, 303, 346, 589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	438, 963
XspI	CTAG	3 cut(s)	575, 800, 1137
ZrmI	AGTACT	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.