Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018547

Physical Location & Seq

Genomic Coordinates Forward (+)

3948549 .. 3949454

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG028600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTCTTACATTCTTCTCCAGGCAGGAGCTGGCCAAGGCCATCAACAACTTCTCTCCGAACTCCATTATCTGTGTAGGTGGATTCGGTCCGATATACAAGGCTGAGCTCTCCAATGGCTCTACTGTGGCTTTGAAATATTTGGACTCAAATGCATTTGGAGGGTTCTCGTATATTCATGCTGAAATAAAAACATTAGGGACGCTCCGCCATCCCAATCTTGTCAAGCTTCTAGGACGTTGCATGTCCAGTTCCGGCAGGTTTCTTGTTTATGAGTTCATCGAGAATGGTAGTCTCCACGAGTGGCTGCATGGACAGCGGGGAGTCCGAGATCCGATGGCATTGCCTTGGGAAACAAGAATGAAGATTGTGAAGGGTGTTGCTGATGCTCTTAAATATTTGCATGGATTGGAAAGACCAGTCATTCACAGGGATATAAAGGCCGGCCACGTGTTATTAGACTCTAATTTTGAGGCTCATCTTACTGATTTCGGGCTGGCTCGAATGCTGGAACCCTCAGAGACGCACTTGTCAACCTATATCAATGCTGGTTCTTTCTGGTATAGGCCACCGGAGTATTTATTCAGTAAGGCATCGTGGGCGACATTGAAAGGCGATGTATACAGCTTTGGAGTTTTGATGTTGGAGATAGCATCTGGGAAGCCTCCGAGTTCCATGGACATCCATCCTTCCTTCAGGTTACGGCTTCCTCAATGTGCCAAGAAGCTTGTTGCCCAAAACATGCACATGGATTTAGTGGATTCAAGGATTTTGAGGCAGGACTTAAACGAAGCTAGTGTTATAGAGTATTTTAGGATTGCTCTTAGTTGTCTCAAGAAGCAGGACCCCAAGAAAAGACCTGAAATGAGTGAGGTTGTACAAATGTTGAATGAACTTCCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

301

Amino Acids

33.99

Weight (kDa)

8.93

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 294	1.7e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 296	2.7e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318351
rosa_laevigata	RLG00000030543
rosa_roxburghii	Rroxscaffold_4G00329290 Rroxscaffold_4G00329300
rosa_rugosa	Rorug01G0020700
rosa_samantha	Rh1AG032800 Rh1BG028600 Rh1CG031200 Rh1DG038300
rosa_wichuraiana	Rw1G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	2 cut(s)	208, 319
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	33, 445
AcuI	CTGAAG	1 cut(s)	679
AcvI	CACGTG	1 cut(s)	451
AfaI	GTAC	1 cut(s)	879
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	4 cut(s)	136, 610, 765, 889
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	6 cut(s)	31, 109, 229, 627, 727, 794
AluI	AGCT	6 cut(s)	31, 109, 229, 627, 727, 794
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	4 cut(s)	9, 299, 515, 836
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	5 cut(s)	33, 39, 441, 445, 566
ApeKI	GCWGC	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
AspS9I	GGNCC	2 cut(s)	89, 844
AvaII	GGWCC	2 cut(s)	89, 844
BalI	TGGCCA	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	4 cut(s)	50, 219, 331, 693
BceAI	ACGGC	1 cut(s)	719
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	4 cut(s)	9, 299, 515, 836
BfaI	CTAG	2 cut(s)	233, 795
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	308
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	2 cut(s)	89, 844
BmgT120I	GGNCC	2 cut(s)	89, 844
BmiI	GGNNCC	2 cut(s)	513, 846
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	376, 602, 662
BpmI	CTGGAG	1 cut(s)	4
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	451
BsaJI	CCNNGG	3 cut(s)	36, 347, 675
BsaWI	WCCGGW	1 cut(s)	571
Bse118I	RCCGGY	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	249, 419
Bse3DI	GCAATG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	36, 347, 675
BseGI	GGATG	3 cut(s)	211, 681, 685
BseMI	GCAATG	1 cut(s)	341
BseMII	CTCAG	2 cut(s)	96, 531
BseNI	ACTGG	2 cut(s)	249, 419
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	5 cut(s)	35, 41, 443, 447, 568
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	3 cut(s)	255, 444, 572
BslFI	GGGAC	1 cut(s)	214
BsmAI	GTCTC	4 cut(s)	9, 299, 515, 836
BsmBI	CGTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	5 cut(s)	35, 41, 443, 447, 568
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	2 cut(s)	208, 319
BspANI	GGCC	5 cut(s)	35, 41, 443, 447, 568
BspCNI	CTCAG	2 cut(s)	97, 530
BspLI	GGNNCC	2 cut(s)	513, 846
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	2 cut(s)	249, 419
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	36, 347, 675
BssMI	GATC	1 cut(s)	331
BssNAI	GTATAC	1 cut(s)	622
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	3 cut(s)	36, 347, 675
Bst1107I	GTATAC	1 cut(s)	622
Bst2BI	CACGAG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	127
BstAUI	TGTACA	1 cut(s)	877
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	3 cut(s)	33, 445, 498
BstDEI	CTNAG	3 cut(s)	105, 517, 824
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	3 cut(s)	211, 681, 685
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	4 cut(s)	9, 299, 515, 836
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 599
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	2 cut(s)	247, 745
BstSCI	CCNGG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BstZ17I	GTATAC	1 cut(s)	622
BsuRI	GGCC	5 cut(s)	35, 41, 443, 447, 568
BtgI	CCRYGG	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	3 cut(s)	211, 681, 685
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	33, 445, 498
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	89, 844
CpoI	CGGWCCG	1 cut(s)	89
CseI	GACGC	2 cut(s)	211, 532
Csp6I	GTAC	1 cut(s)	878
CspI	CGGWCCG	1 cut(s)	89
CviAII	CATG	8 cut(s)	179, 244, 311, 404, 676, 742, 748, 901
CviQI	GTAC	1 cut(s)	878
DdeI	CTNAG	3 cut(s)	105, 517, 824
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	529
DseDI	GACNNNNNNGTC	1 cut(s)	529
EaeI	YGGCCR	2 cut(s)	33, 445
EciI	GGCGGA	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	36, 347, 675
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	89, 844
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	679
Eco72I	CACGTG	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	3 cut(s)	36, 347, 675
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	3 cut(s)	36, 347, 675
Esp3I	CGTCTC	1 cut(s)	515
FaeI	CATG	8 cut(s)	182, 247, 314, 407, 679, 745, 751, 904
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	8 cut(s)	178, 243, 310, 403, 675, 741, 747, 900
FauI	CCCGC	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	3 cut(s)	198, 668, 672
FriOI	GRGCYC	1 cut(s)	111
FseI	GGCCGGCC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	2 cut(s)	233, 795
GluI	GCNGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	5 cut(s)	35, 41, 443, 447, 568
HapII	CCGG	3 cut(s)	255, 444, 572
HgaI	GACGC	2 cut(s)	211, 532
Hin1II	CATG	8 cut(s)	182, 247, 314, 407, 679, 745, 751, 904
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	2 cut(s)	227, 725
HinfI	GANTC	5 cut(s)	84, 146, 324, 461, 761
HpaII	CCGG	3 cut(s)	255, 444, 572
Hpy166II	GTNNAC	2 cut(s)	534, 622
Hpy188I	TCNGA	6 cut(s)	60, 93, 329, 336, 520, 669
Hpy188III	TCNNGA	2 cut(s)	283, 835
Hpy8I	GTNNAC	2 cut(s)	534, 622
HpyAV	CCTTC	3 cut(s)	367, 699, 703
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	238, 450
HpyCH4V	TGCA	5 cut(s)	155, 243, 310, 403, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 599
HpyF3I	CTNAG	3 cut(s)	105, 517, 824
HpySE526I	ACGT	2 cut(s)	238, 450
Hsp92II	CATG	8 cut(s)	182, 247, 314, 407, 679, 745, 751, 904
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	28, 210
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	3 cut(s)	376, 602, 662
MaeI	CTAG	2 cut(s)	233, 795
MaeII	ACGT	2 cut(s)	238, 450
MaeIII	GTNAC	1 cut(s)	699
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	2 cut(s)	7, 376
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	466
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	140, 333, 455
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	7 cut(s)	155, 466, 526, 675, 720, 768, 865
Mox20I	TGGCCA	1 cut(s)	35
Mph1103I	ATGCAT	1 cut(s)	157
MroNI	GCCGGC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	2 cut(s)	393, 785
MslI	CAYNNNNRTG	1 cut(s)	746
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	3 cut(s)	255, 444, 572
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	316, 599
NaeI	GCCGGC	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	1 cut(s)	331
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	8 cut(s)	182, 247, 314, 407, 679, 745, 751, 904
NlaIV	GGNNCC	2 cut(s)	513, 846
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	2 cut(s)	247, 745
PctI	GAATGC	1 cut(s)	510
PdiI	GCCGGC	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	84, 761
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	3 cut(s)	140, 332, 455
PmaCI	CACGTG	1 cut(s)	451
PmlI	CACGTG	1 cut(s)	451
PpsI	GAGTC	3 cut(s)	140, 332, 455
Ppu21I	YACGTR	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	844
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	20
PspCI	CACGTG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	513, 846
PspPI	GGNCC	2 cut(s)	89, 844
PspPPI	RGGWCCY	1 cut(s)	844
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	331
RigI	GGCCGGCC	1 cut(s)	447
RsaI	GTAC	1 cut(s)	879
RsaNI	GTAC	1 cut(s)	878
RseI	CAYNNNNRTG	1 cut(s)	746
Rsr2I	CGGWCCG	1 cut(s)	89
RsrII	CGGWCCG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	393, 785
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	89, 844
SchI	GAGTC	3 cut(s)	140, 333, 455
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	3 cut(s)	376, 602, 662
SinI	GGWCC	2 cut(s)	89, 844
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	2 cut(s)	208, 319
SspI	AATATT	2 cut(s)	140, 398
SspMI	CTAG	2 cut(s)	233, 795
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	3 cut(s)	36, 347, 675
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	241, 453
TaqI	TCGA	2 cut(s)	282, 502
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	466
TatI	WGTACW	1 cut(s)	877
TfiI	GAWTC	2 cut(s)	84, 761
Tru1I	TTAA	2 cut(s)	393, 785
Tru9I	TTAA	2 cut(s)	393, 785
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	167, 268, 377, 906
VpaK11BI	GGWCC	2 cut(s)	89, 844
XceI	RCATGY	2 cut(s)	247, 745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	2 cut(s)	233, 795
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.