Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018547

Physical Location & Seq

Genomic Coordinates Reverse (-)

62533064 .. 62533868

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCTCTTCCATTCTTCTCCAAGCAGGAGCTGGCCAAGGCCACCGACAACTTCTCTCCAAACTCCATTATCTGTATAGGTGGATTCAGTCCGATATACAAGGCTGAGCTCTCCAATGGTTCTACAGTGGCTTTGAAATATTTGGACTCAAATGCATTTGGAGGGGTTCTTGTTTATGAGTTCATCGAGAATGGTAGTCTCCATGAGTGGCTGCATGGACAGCGGGGAGTCCGGGATCCGATGGCATTGCCTTGGGAAACAAGAATGAAGATTGTGAAGGGTGTTGCTGATGCTCTTAAATATTTGCATGGATTGCAAAGACCAGTCATTCACAGGGATATAAAGGCCGGCCATGTGTTATTAGACTCTAATTTTGAGACTCATCTTACTGATTTCGGGCTGGCTCGAATGCTGGAACCCTCAGAGACGCACTTGTCAATCTATATCAATGCTGGTTCTCTCTGCTTCGGAGTTTTGATGTTGGAGATAGCATCTGGGAAGCCTCCGAGTTCCATGGACATTCATCCTTCCTTCAGGTTACGGCTTCCTCGATGTGCCAAGAAGCTTGTTAATTGCCAAAAACATGCACATGGATTTAGTAGACTCAAGGATTTTGAGGCAGAAATTAAACGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.67

Weight (kDa)

8.87

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	56 - 143	3.9e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	56 - 142	1.1e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318351
rosa_laevigata	RLG00000030543
rosa_roxburghii	Rroxscaffold_4G00329290 Rroxscaffold_4G00329300
rosa_rugosa	Rorug01G0020700
rosa_samantha	Rh1AG032800 Rh1BG028600 Rh1CG031200 Rh1DG038300
rosa_wichuraiana	Rw1G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	601
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	2 cut(s)	230, 243
AcoI	YGGCCR	2 cut(s)	33, 349
AcuI	CTGAAG	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	4 cut(s)	31, 109, 565, 636
AluI	AGCT	4 cut(s)	31, 109, 565, 636
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	4 cut(s)	9, 203, 371, 419
AlwI	GGATC	2 cut(s)	230, 243
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	4 cut(s)	33, 39, 345, 349
ApeKI	GCWGC	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AsuC2I	CCSGG	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	557
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	4 cut(s)	9, 203, 371, 419
BfaI	CTAG	1 cut(s)	637
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	212
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	237, 417
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	280, 500
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	36, 251, 513
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	36, 251, 513
BseGI	GGATG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	2 cut(s)	96, 435
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	4 cut(s)	35, 41, 347, 351
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	232, 348
BsmAI	GTCTC	4 cut(s)	9, 203, 371, 419
BsmBI	CGTCTC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	4 cut(s)	35, 41, 347, 351
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	235
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	4 cut(s)	35, 41, 347, 351
BspCNI	CTCAG	2 cut(s)	97, 434
BspLI	GGNNCC	2 cut(s)	237, 417
BspPI	GGATC	2 cut(s)	230, 243
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	3 cut(s)	36, 251, 513
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	3 cut(s)	36, 251, 513
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	33, 349, 402
BstDEI	CTNAG	2 cut(s)	105, 421
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	4 cut(s)	9, 203, 371, 419
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 313
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	4 cut(s)	35, 41, 347, 351
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	33, 349, 402
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	347
CseI	GACGC	1 cut(s)	436
CviAII	CATG	7 cut(s)	203, 215, 308, 353, 514, 584, 590
DdeI	CTNAG	2 cut(s)	105, 421
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	433
DseDI	GACNNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	2 cut(s)	33, 349
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	36, 251, 513
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	517
EcoICRI	GAGCTC	1 cut(s)	109
EcoT14I	CCWWGG	3 cut(s)	36, 251, 513
EcoT22I	ATGCAT	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	3 cut(s)	36, 251, 513
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	7 cut(s)	206, 218, 311, 356, 517, 587, 593
FatI	CATG	7 cut(s)	202, 214, 307, 352, 513, 583, 589
FauI	CCCGC	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	1 cut(s)	111
FseI	GGCCGGCC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	637
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	4 cut(s)	35, 41, 347, 351
HapII	CCGG	2 cut(s)	232, 348
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	7 cut(s)	206, 218, 311, 356, 517, 587, 593
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	6 cut(s)	84, 146, 228, 365, 379, 603
HpaII	CCGG	2 cut(s)	232, 348
Hpy166II	GTNNAC	1 cut(s)	602
Hpy188I	TCNGA	5 cut(s)	93, 240, 424, 470, 507
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	602
HpyAV	CCTTC	3 cut(s)	271, 537, 541
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	5 cut(s)	155, 214, 307, 316, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 313
HpyF3I	CTNAG	2 cut(s)	105, 421
Hsp92II	CATG	7 cut(s)	206, 218, 311, 356, 517, 587, 593
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	280, 500
MaeI	CTAG	1 cut(s)	637
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	7, 280
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	3 cut(s)	370, 571, 624
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	5 cut(s)	140, 237, 359, 373, 597
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	5 cut(s)	155, 430, 513, 558, 610
Mox20I	TGGCCA	1 cut(s)	35
Mph1103I	ATGCAT	1 cut(s)	157
MroNI	GCCGGC	1 cut(s)	347
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	3 cut(s)	297, 570, 627
MslI	CAYNNNNRTG	1 cut(s)	588
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	2 cut(s)	232, 348
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	414
MwoI	GCNNNNNNNGC	2 cut(s)	220, 313
NaeI	GCCGGC	1 cut(s)	349
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	235
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	7 cut(s)	206, 218, 311, 356, 517, 587, 593
NlaIV	GGNNCC	2 cut(s)	237, 417
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	547
PctI	GAATGC	1 cut(s)	414
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	5 cut(s)	140, 236, 359, 373, 597
PpsI	GAGTC	5 cut(s)	140, 236, 359, 373, 597
Psp124BI	GAGCTC	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	237, 417
PstNI	CAGNNNCTG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	235
RigI	GGCCGGCC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	588
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	297, 570, 627
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	235
SchI	GAGTC	5 cut(s)	140, 237, 359, 373, 597
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	33, 82, 111, 539, 567, 638
SfaNI	GCATC	2 cut(s)	280, 500
SfcI	CTRYAG	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	3 cut(s)	370, 571, 624
SsiI	CCGC	1 cut(s)	223
SspI	AATATT	2 cut(s)	140, 302
SspMI	CTAG	1 cut(s)	637
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	3 cut(s)	36, 251, 513
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	186, 406, 550
TasI	AATT	3 cut(s)	370, 571, 624
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	297, 570, 627
Tru9I	TTAA	3 cut(s)	297, 570, 627
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	172, 281, 512
TspRI	CASTG	1 cut(s)	132
XceI	RCATGY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	1 cut(s)	637
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.