Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018547

Physical Location & Seq

Genomic Coordinates Reverse (-)

6117578 .. 6118483

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG038300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTGTGGATCCATTATTCCCCAAGTGGGAGCTGGCAAAGGCCACCAACAACTTCTCTCCAAACTCCATTACATGTATAGGTGGATTCGGTCCGATATACAAGGCTGAGCTCTCCAATGGCTCTACTGTGGCTTTGAAATATTTGCACTCAAATGCATTTGGAGGGTTCTCGGAATTTTGTGCTGAAATAAAAACATTAGGGAAGCTCCGCCATCCCAATCTTGTCAAGCTTCTAGGACGTTGCATGACCAATTCCTGCAGGTTTCTTGTTTATGAGTTCATCGAGAATGGTAGTCTCCACGAGTGGCTGCATGGACAGCGGGGAGTCCGGGATCCGATGGCATTGCCTTGGGAAACAAGAATGAAGATTGTGAAGGGTGTTGCTGATGCTCTTAAATATTTGCATGGATTGCAAAGACCAGTCATTCACAGGGATATAAAGGCCGGCCATGTGTTATTAGACTCTAATTTTGAGGCTCATCTTACTGATTTCGGGCTGGCTCGAATGCTGGAACCCTCAGAGACGCACTTGTCAACCTATATCAATGCTGGTTCTTTCTGGTATAGGCCACCGGAGTATTTATTCAGTAAGGCATCGTGGGCGACATTGAAAGGCGATGTATACAGCTTTGGGGTTTTGATGTTGGAGATAGCATCTGGGAAGCCTCCGAGCTCCACGGACATCCATCCTTCCTTCAGGTTGCGGCTTCCTCAATGTGCCAAGAAGCTTGTTGCCCAAAGCATGCACATGGATTTAGTGGATTCAAGGATTTTGAGGCAGGAATTAAACGAGGCTAGTGTTATAGAGTATTTTAGGATTGCTCTTAGTTGCCTCAAGAAAGACCCCAAGAAAAGACCTAAAATGAGTGAGGTTGTACAAATGTTGAATGATCTTCCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

301

Amino Acids

34.0

Weight (kDa)

9.13

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	28 - 296	2.6e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	28 - 294	3.1e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318351
rosa_laevigata	RLG00000030543
rosa_roxburghii	Rroxscaffold_4G00329290 Rroxscaffold_4G00329300
rosa_rugosa	Rorug01G0020700
rosa_samantha	Rh1AG032800 Rh1BG028600 Rh1CG031200 Rh1DG038300
rosa_wichuraiana	Rw1G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	3 cut(s)	211, 322, 706
AclWI	GGATC	4 cut(s)	5, 18, 329, 342
AcoI	YGGCCR	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	682
AfaI	GTAC	1 cut(s)	879
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	139, 613, 768, 889
AluBI	AGCT	7 cut(s)	34, 112, 208, 232, 630, 675, 730
AluI	AGCT	7 cut(s)	34, 112, 208, 232, 630, 675, 730
Alw21I	GWGCWC	2 cut(s)	114, 677
Alw26I	GTCTC	2 cut(s)	302, 518
AlwI	GGATC	4 cut(s)	5, 18, 329, 342
AoxI	GGCC	4 cut(s)	42, 444, 448, 569
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	2 cut(s)	10, 334
BanII	GRGCYC	2 cut(s)	114, 677
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	114, 677
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	3 cut(s)	222, 334, 696
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	302, 518
BfaI	CTAG	2 cut(s)	236, 798
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	311, 707
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	2 cut(s)	312, 708
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	12, 336, 516
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	379, 605, 665
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	821
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	350, 678
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	350, 678
BseGI	GGATG	3 cut(s)	214, 684, 688
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	99, 534
BseNI	ACTGG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	297
BshFI	GGCC	4 cut(s)	44, 446, 450, 571
BsiHKAI	GWGCWC	2 cut(s)	114, 677
BsiSI	CCGG	3 cut(s)	331, 447, 575
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	302, 518
BsmBI	CGTCTC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	513
BsnI	GGCC	4 cut(s)	44, 446, 450, 571
Bsp1286I	GDGCHC	2 cut(s)	114, 677
Bsp1407I	TGTACA	1 cut(s)	877
Bsp143I	GATC	3 cut(s)	10, 334, 892
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	3 cut(s)	211, 322, 706
BspANI	GGCC	4 cut(s)	44, 446, 450, 571
BspCNI	CTCAG	2 cut(s)	100, 533
BspLI	GGNNCC	3 cut(s)	12, 336, 516
BspMAI	CTGCAG	1 cut(s)	263
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	4 cut(s)	5, 18, 329, 342
BsrDI	GCAATG	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	446
BsrGI	TGTACA	1 cut(s)	877
BsrI	ACTGG	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	350, 678
BssMI	GATC	3 cut(s)	10, 334, 892
BssNAI	GTATAC	1 cut(s)	625
BssSI	CACGAG	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	350
Bst1107I	GTATAC	1 cut(s)	625
Bst2BI	CACGAG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	877
BstC8I	GCNNGC	4 cut(s)	36, 448, 501, 746
BstDEI	CTNAG	3 cut(s)	108, 520, 827
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	3 cut(s)	214, 684, 688
BstKTI	GATC	3 cut(s)	13, 337, 895
BstMAI	GTCTC	2 cut(s)	302, 518
BstMBI	GATC	3 cut(s)	10, 334, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 412, 602
BstNSI	RCATGY	2 cut(s)	78, 748
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	10, 334
BstYI	RGATCY	2 cut(s)	10, 334
BstZ17I	GTATAC	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	44, 446, 450, 571
BtgI	CCRYGG	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	214, 684, 688
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	36, 448, 501, 746
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	92
CpoI	CGGWCCG	1 cut(s)	92
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	878
CspI	CGGWCCG	1 cut(s)	92
CviAII	CATG	8 cut(s)	75, 247, 314, 407, 452, 745, 751, 901
CviQI	GTAC	1 cut(s)	878
DdeI	CTNAG	3 cut(s)	108, 520, 827
DpnI	GATC	3 cut(s)	12, 336, 894
DpnII	GATC	3 cut(s)	10, 334, 892
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	200
Ecl136II	GAGCTC	2 cut(s)	112, 675
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	2 cut(s)	114, 677
Eco47I	GGWCC	1 cut(s)	92
Eco53kI	GAGCTC	2 cut(s)	112, 675
Eco57I	CTGAAG	1 cut(s)	682
EcoICRI	GAGCTC	2 cut(s)	112, 675
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	2 cut(s)	114, 677
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	518
FaeI	CATG	8 cut(s)	78, 250, 317, 410, 455, 748, 754, 904
FatI	CATG	8 cut(s)	74, 246, 313, 406, 451, 744, 750, 900
FauI	CCCGC	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	2 cut(s)	311, 707
FokI	GGATG	3 cut(s)	201, 671, 675
FriOI	GRGCYC	2 cut(s)	114, 677
FseI	GGCCGGCC	1 cut(s)	450
Fsp4HI	GCNGC	2 cut(s)	311, 707
FspBI	CTAG	2 cut(s)	236, 798
GluI	GCNGC	2 cut(s)	311, 707
HaeIII	GGCC	4 cut(s)	44, 446, 450, 571
HapII	CCGG	3 cut(s)	331, 447, 575
HgaI	GACGC	1 cut(s)	535
Hin1II	CATG	8 cut(s)	78, 250, 317, 410, 455, 748, 754, 904
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	2 cut(s)	230, 728
HinfI	GANTC	4 cut(s)	87, 327, 464, 764
HpaII	CCGG	3 cut(s)	331, 447, 575
Hpy166II	GTNNAC	2 cut(s)	537, 625
Hpy188I	TCNGA	5 cut(s)	96, 175, 339, 523, 672
Hpy188III	TCNNGA	2 cut(s)	286, 838
Hpy8I	GTNNAC	2 cut(s)	537, 625
HpyAV	CCTTC	3 cut(s)	370, 702, 706
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	8 cut(s)	148, 158, 246, 261, 313, 406, 415, 748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 412, 602
HpyF3I	CTNAG	3 cut(s)	108, 520, 827
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	8 cut(s)	78, 250, 317, 410, 455, 748, 754, 904
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	10, 334, 892
LmnI	GCTCC	3 cut(s)	31, 213, 680
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	3 cut(s)	379, 605, 665
MaeI	CTAG	2 cut(s)	236, 798
MaeII	ACGT	1 cut(s)	241
MalI	GATC	3 cut(s)	12, 336, 894
MboI	GATC	3 cut(s)	10, 334, 892
MboII	GAAGA	2 cut(s)	379, 887
MflI	RGATCY	2 cut(s)	10, 334
MhlI	GDGCHC	2 cut(s)	114, 677
MluCI	AATT	4 cut(s)	176, 253, 469, 785
MlyI	GAGTC	2 cut(s)	336, 458
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	9 cut(s)	158, 469, 529, 678, 723, 771, 787, 845, 865
Mph1103I	ATGCAT	1 cut(s)	160
MroNI	GCCGGC	1 cut(s)	446
MseI	TTAA	2 cut(s)	396, 788
MslI	CAYNNNNRTG	2 cut(s)	153, 749
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	3 cut(s)	331, 447, 575
MspR9I	CCNGG	1 cut(s)	332
Mva1269I	GAATGC	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	319, 412, 602
NaeI	GCCGGC	1 cut(s)	448
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	3 cut(s)	10, 334, 892
NgoMIV	GCCGGC	1 cut(s)	446
NlaIII	CATG	8 cut(s)	78, 250, 317, 410, 455, 748, 754, 904
NlaIV	GGNNCC	3 cut(s)	12, 336, 516
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	2 cut(s)	78, 748
PaeI	GCATGC	1 cut(s)	748
PciI	ACATGT	1 cut(s)	74
PctI	GAATGC	1 cut(s)	513
PdiI	GCCGGC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	87, 764
PfoI	TCCNGGA	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	312, 708
PleI	GAGTC	2 cut(s)	335, 458
PpsI	GAGTC	2 cut(s)	335, 458
PscI	ACATGT	1 cut(s)	74
Psp124BI	GAGCTC	2 cut(s)	114, 677
PspN4I	GGNNCC	3 cut(s)	12, 336, 516
PspPI	GGNCC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	263
PsuI	RGATCY	2 cut(s)	10, 334
RigI	GGCCGGCC	1 cut(s)	450
RsaI	GTAC	1 cut(s)	879
RsaNI	GTAC	1 cut(s)	878
RseI	CAYNNNNRTG	2 cut(s)	153, 749
Rsr2I	CGGWCCG	1 cut(s)	92
RsrII	CGGWCCG	1 cut(s)	92
SacI	GAGCTC	2 cut(s)	114, 677
SaqAI	TTAA	2 cut(s)	396, 788
SatI	GCNGC	2 cut(s)	311, 707
Sau3AI	GATC	3 cut(s)	10, 334, 892
Sau96I	GGNCC	1 cut(s)	92
SbfI	CCTGCAGG	1 cut(s)	263
SchI	GAGTC	2 cut(s)	336, 458
ScrFI	CCNGG	1 cut(s)	332
SdaI	CCTGCAGG	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	114, 677
SfaNI	GCATC	3 cut(s)	379, 605, 665
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	153, 749
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SphI	GCATGC	1 cut(s)	748
Sse8387I	CCTGCAGG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	176, 253, 469, 785
SsiI	CCGC	3 cut(s)	211, 322, 706
SspI	AATATT	2 cut(s)	143, 401
SspMI	CTAG	2 cut(s)	236, 798
SstI	GAGCTC	2 cut(s)	114, 677
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	285, 505
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	4 cut(s)	176, 253, 469, 785
TatI	WGTACW	1 cut(s)	877
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	2 cut(s)	87, 764
Tru1I	TTAA	2 cut(s)	396, 788
Tru9I	TTAA	2 cut(s)	396, 788
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	271, 380
TspGWI	ACGGA	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	2 cut(s)	78, 748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	2 cut(s)	236, 798
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.