Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018547

Physical Location & Seq

Genomic Coordinates Reverse (-)

62535182 .. 62536086

Gene Structure 905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCTGTGGATCCATTATTCCCCAAGTGGGAGCTGGCCAAGGCCACCAACAACTTCTCTCCAAACTCCATTACATGTATAGGTGGATTCGGTCCGATATACAAGGCTGAGCTCTCCAATGGCTCTACTGTGGCTTTGAAATATTTGCACTCAAATGCATTTGGAGGGTTTCTTGTTTATGAGTTCATCGAGAATGGTAGTCTCCACGAGTGGCTGCATGGACAGAGGGGAGTCCGGGATCCGATGGCATTGCCTTGGGAAACAAGAATGAAGATTGTGAAGGGTGTTGCTGATGCTCTTAAATATTTGCATGGATTGCAAAGACCGGTCATTCACAGGGATATAAAGGCCGGCCATGTGTTATTAGACTCTAATTTTGAGGCTCATCTTACTGATTTCGGGCTGGCTCGAATGCTGGAACCCTCAGAGACGCACTTGTCAACCTATATCAATGCTGGTTCTTTCTGGTATAGGCCACCGGAGTATTTATTCAGTAAGGCATCGTGGGCGACATTGAAAGGCGATGTATACAGCTTTGGAGTTTTGATGTTGGAGATAGCATCTGGGAAGCCTCCGAGCTCCACGGACATCCATCCTTCCTTCAGGTTGCGGCTTCCTCAATGTGCTAAGAAGCTTGTTGCCCAAAGCATGCACATGGATTTAGTGGATTCAAGGATTTTGAGGCAGGAATTAAACGAAGCTAGTGTTATAGAGTATTTTAGGATAGCTCTTAGTTGCCTCAAGAAAGACCCCAAGAAAAGACCTAAAATGAGTGAGGTTGTACAAATGTTGAATGATCTTCCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

30.35

Weight (kDa)

8.85

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	56 - 264	2.6e-28	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	57 - 262	2.2e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018547)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318351
rosa_laevigata	RLG00000030543
rosa_roxburghii	Rroxscaffold_4G00329290 Rroxscaffold_4G00329300
rosa_rugosa	Rorug01G0020700
rosa_samantha	Rh1AG032800 Rh1BG028600 Rh1CG031200 Rh1DG038300
rosa_wichuraiana	Rw1G002620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	4 cut(s)	5, 18, 233, 246
AcoI	YGGCCR	2 cut(s)	36, 352
AcuI	CTGAAG	1 cut(s)	586
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	74
AgeI	ACCGGT	1 cut(s)	325
AgsI	TTSAA	4 cut(s)	139, 517, 672, 793
AluBI	AGCT	7 cut(s)	34, 112, 534, 579, 634, 701, 728
AluI	AGCT	7 cut(s)	34, 112, 534, 579, 634, 701, 728
Alw21I	GWGCWC	2 cut(s)	114, 581
Alw26I	GTCTC	2 cut(s)	206, 422
AlwI	GGATC	4 cut(s)	5, 18, 233, 246
AoxI	GGCC	5 cut(s)	36, 42, 348, 352, 473
ApeKI	GCWGC	1 cut(s)	214
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AsiGI	ACCGGT	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	2 cut(s)	10, 238
BanII	GRGCYC	2 cut(s)	114, 581
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	114, 581
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	2 cut(s)	238, 600
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	206, 422
BfaI	CTAG	1 cut(s)	702
BisI	GCNGC	2 cut(s)	215, 611
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	2 cut(s)	216, 612
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	12, 240, 420
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	3 cut(s)	283, 509, 569
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	39, 254, 582
BsaWI	WCCGGW	2 cut(s)	325, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	2 cut(s)	325, 350
Bse3DI	GCAATG	1 cut(s)	248
BseDI	CCNNGG	3 cut(s)	39, 254, 582
BseGI	GGATG	2 cut(s)	588, 592
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	99, 438
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	5 cut(s)	38, 44, 350, 354, 475
BshTI	ACCGGT	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	114, 581
BsiSI	CCGG	4 cut(s)	235, 326, 351, 479
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	206, 422
BsmBI	CGTCTC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	5 cut(s)	38, 44, 350, 354, 475
Bsp1286I	GDGCHC	2 cut(s)	114, 581
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	3 cut(s)	10, 238, 796
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	5 cut(s)	38, 44, 350, 354, 475
BspCNI	CTCAG	2 cut(s)	100, 437
BspLI	GGNNCC	3 cut(s)	12, 240, 420
BspPI	GGATC	4 cut(s)	5, 18, 233, 246
BsrDI	GCAATG	1 cut(s)	248
BsrFI	RCCGGY	2 cut(s)	325, 350
BsrGI	TGTACA	1 cut(s)	781
BssAI	RCCGGY	2 cut(s)	325, 350
BssECI	CCNNGG	3 cut(s)	39, 254, 582
BssMI	GATC	3 cut(s)	10, 238, 796
BssNAI	GTATAC	1 cut(s)	529
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	39, 254
Bst1107I	GTATAC	1 cut(s)	529
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	781
BstC8I	GCNNGC	4 cut(s)	36, 352, 405, 650
BstDEI	CTNAG	4 cut(s)	108, 424, 627, 731
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	588, 592
BstKTI	GATC	3 cut(s)	13, 241, 799
BstMAI	GTCTC	2 cut(s)	206, 422
BstMBI	GATC	3 cut(s)	10, 238, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 506
BstNSI	RCATGY	2 cut(s)	78, 652
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	10, 238
BstYI	RGATCY	2 cut(s)	10, 238
BstZ17I	GTATAC	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	38, 44, 350, 354, 475
BtgI	CCRYGG	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	588, 592
Cac8I	GCNNGC	4 cut(s)	36, 352, 405, 650
Cfr10I	RCCGGY	2 cut(s)	325, 350
Cfr13I	GGNCC	1 cut(s)	92
CpoI	CGGWCCG	1 cut(s)	92
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	782
CspAI	ACCGGT	1 cut(s)	325
CspI	CGGWCCG	1 cut(s)	92
CviAII	CATG	7 cut(s)	75, 218, 311, 356, 649, 655, 805
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	4 cut(s)	108, 424, 627, 731
DpnI	GATC	3 cut(s)	12, 240, 798
DpnII	GATC	3 cut(s)	10, 238, 796
DrdI	GACNNNNNNGTC	1 cut(s)	436
DseDI	GACNNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	2 cut(s)	36, 352
Ecl136II	GAGCTC	2 cut(s)	112, 579
Eco130I	CCWWGG	2 cut(s)	39, 254
Eco24I	GRGCYC	2 cut(s)	114, 581
Eco47I	GGWCC	1 cut(s)	92
Eco53kI	GAGCTC	2 cut(s)	112, 579
Eco57I	CTGAAG	1 cut(s)	586
EcoICRI	GAGCTC	2 cut(s)	112, 579
EcoT14I	CCWWGG	2 cut(s)	39, 254
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	2 cut(s)	114, 581
ErhI	CCWWGG	2 cut(s)	39, 254
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	7 cut(s)	78, 221, 314, 359, 652, 658, 808
FatI	CATG	7 cut(s)	74, 217, 310, 355, 648, 654, 804
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	215, 611
FokI	GGATG	2 cut(s)	575, 579
FriOI	GRGCYC	2 cut(s)	114, 581
FseI	GGCCGGCC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	215, 611
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	2 cut(s)	215, 611
HaeIII	GGCC	5 cut(s)	38, 44, 350, 354, 475
HapII	CCGG	4 cut(s)	235, 326, 351, 479
HgaI	GACGC	1 cut(s)	439
Hin1II	CATG	7 cut(s)	78, 221, 314, 359, 652, 658, 808
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	4 cut(s)	87, 231, 368, 668
HpaII	CCGG	4 cut(s)	235, 326, 351, 479
Hpy166II	GTNNAC	2 cut(s)	441, 529
Hpy188I	TCNGA	4 cut(s)	96, 243, 427, 576
Hpy188III	TCNNGA	2 cut(s)	190, 742
Hpy8I	GTNNAC	2 cut(s)	441, 529
HpyAV	CCTTC	3 cut(s)	274, 606, 610
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	6 cut(s)	148, 158, 217, 310, 319, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 506
HpyF3I	CTNAG	4 cut(s)	108, 424, 627, 731
Hsp92II	CATG	7 cut(s)	78, 221, 314, 359, 652, 658, 808
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	10, 238, 796
LmnI	GCTCC	2 cut(s)	31, 584
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	3 cut(s)	283, 509, 569
MaeI	CTAG	1 cut(s)	702
MalI	GATC	3 cut(s)	12, 240, 798
MboI	GATC	3 cut(s)	10, 238, 796
MboII	GAAGA	2 cut(s)	283, 791
MflI	RGATCY	2 cut(s)	10, 238
MhlI	GDGCHC	2 cut(s)	114, 581
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	2 cut(s)	373, 689
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	240, 362
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	9 cut(s)	158, 219, 373, 433, 582, 627, 675, 749, 769
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	160
MroNI	GCCGGC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	300, 692
MslI	CAYNNNNRTG	2 cut(s)	153, 653
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	4 cut(s)	235, 326, 351, 479
MspR9I	CCNGG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	316, 506
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	3 cut(s)	10, 238, 796
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	7 cut(s)	78, 221, 314, 359, 652, 658, 808
NlaIV	GGNNCC	3 cut(s)	12, 240, 420
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	2 cut(s)	78, 652
PaeI	GCATGC	1 cut(s)	652
PciI	ACATGT	1 cut(s)	74
PctI	GAATGC	1 cut(s)	417
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	87, 668
PfoI	TCCNGGA	1 cut(s)	234
PinAI	ACCGGT	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	216, 612
PleI	GAGTC	2 cut(s)	239, 362
PpsI	GAGTC	2 cut(s)	239, 362
PscI	ACATGT	1 cut(s)	74
Psp124BI	GAGCTC	2 cut(s)	114, 581
PspN4I	GGNNCC	3 cut(s)	12, 240, 420
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	10, 238
RigI	GGCCGGCC	1 cut(s)	354
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	2 cut(s)	153, 653
Rsr2I	CGGWCCG	1 cut(s)	92
RsrII	CGGWCCG	1 cut(s)	92
SacI	GAGCTC	2 cut(s)	114, 581
SaqAI	TTAA	2 cut(s)	300, 692
SatI	GCNGC	2 cut(s)	215, 611
Sau3AI	GATC	3 cut(s)	10, 238, 796
Sau96I	GGNCC	1 cut(s)	92
SchI	GAGTC	2 cut(s)	240, 362
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	2 cut(s)	114, 581
SfaNI	GCATC	3 cut(s)	283, 509, 569
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	153, 653
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	652
Sse9I	AATT	2 cut(s)	373, 689
SsiI	CCGC	1 cut(s)	610
SspI	AATATT	2 cut(s)	143, 305
SspMI	CTAG	1 cut(s)	702
SstI	GAGCTC	2 cut(s)	114, 581
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	39, 254
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	189, 409
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	373, 689
TatI	WGTACW	1 cut(s)	781
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	2 cut(s)	87, 668
Tru1I	TTAA	2 cut(s)	300, 692
Tru9I	TTAA	2 cut(s)	300, 692
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	175, 284
TspGWI	ACGGA	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	92
XceI	RCATGY	2 cut(s)	78, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	1 cut(s)	702
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.