isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1013300.v1.1 |
| rosa_chinensis | RchiOBHm_Chr5g0079171 |
| rosa_laevigata | RLG00000030645 |
| rosa_multiflora | Rmu_sc0011280.1_g000004 |
| rosa_samantha | Rh5BG539500 Rh6BG125300 Rh6CG124000 Rh6CG124100 Rh6CG160700 Rh6CG160800 |
| rosa_wichuraiana | Rw0G003100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 11 |
| AccI | GTMKAC | 1 cut(s) | 214 |
| AciI | CCGC | 1 cut(s) | 205 |
| AcsI | RAATTY | 3 cut(s) | 19, 238, 272 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AflIII | ACRYGT | 1 cut(s) | 369 |
| AgsI | TTSAA | 4 cut(s) | 17, 155, 237, 260 |
| AluBI | AGCT | 1 cut(s) | 106 |
| AluI | AGCT | 1 cut(s) | 106 |
| Alw26I | GTCTC | 2 cut(s) | 190, 318 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 335 |
| Ama87I | CYCGRG | 1 cut(s) | 138 |
| ApeKI | GCWGC | 2 cut(s) | 103, 281 |
| ApoI | RAATTY | 3 cut(s) | 19, 238, 272 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 336 |
| AvaI | CYCGRG | 1 cut(s) | 138 |
| BbvI | GCAGC | 2 cut(s) | 115, 293 |
| BccI | CCATC | 2 cut(s) | 59, 343 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 53, 87 |
| BcoDI | GTCTC | 2 cut(s) | 190, 318 |
| BisI | GCNGC | 2 cut(s) | 104, 282 |
| BlsI | GCNGC | 2 cut(s) | 105, 283 |
| BmeT110I | CYCGRG | 1 cut(s) | 138 |
| BmiI | GGNNCC | 1 cut(s) | 266 |
| BmsI | GCATC | 1 cut(s) | 73 |
| Bse1I | ACTGG | 1 cut(s) | 427 |
| Bse3DI | GCAATG | 1 cut(s) | 217 |
| BseGI | GGATG | 1 cut(s) | 295 |
| BseMI | GCAATG | 1 cut(s) | 217 |
| BseNI | ACTGG | 1 cut(s) | 427 |
| BseXI | GCAGC | 2 cut(s) | 115, 293 |
| BsiHKCI | CYCGRG | 1 cut(s) | 138 |
| BslFI | GGGAC | 1 cut(s) | 259 |
| BsmAI | GTCTC | 2 cut(s) | 190, 318 |
| BsmBI | CGTCTC | 1 cut(s) | 318 |
| BsmFI | GGGAC | 1 cut(s) | 259 |
| BsmI | GAATGC | 1 cut(s) | 179 |
| BsoBI | CYCGRG | 1 cut(s) | 138 |
| Bsp143I | GATC | 1 cut(s) | 70 |
| BspACI | CCGC | 1 cut(s) | 205 |
| BspLI | GGNNCC | 1 cut(s) | 266 |
| BsrDI | GCAATG | 1 cut(s) | 217 |
| BsrI | ACTGG | 1 cut(s) | 427 |
| BssMI | GATC | 1 cut(s) | 70 |
| BssNAI | GTATAC | 1 cut(s) | 215 |
| Bst1107I | GTATAC | 1 cut(s) | 215 |
| Bst4CI | ACNGT | 2 cut(s) | 385, 419 |
| BstC8I | GCNNGC | 1 cut(s) | 135 |
| BstF5I | GGATG | 1 cut(s) | 295 |
| BstKTI | GATC | 1 cut(s) | 73 |
| BstMAI | GTCTC | 2 cut(s) | 190, 318 |
| BstMBI | GATC | 1 cut(s) | 70 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstV1I | GCAGC | 2 cut(s) | 115, 293 |
| BstZ17I | GTATAC | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 295 |
| BtsI | GCAGTG | 1 cut(s) | 291 |
| BtsIMutI | CAGTG | 2 cut(s) | 190, 291 |
| Cac8I | GCNNGC | 1 cut(s) | 135 |
| CaiI | CAGNNNCTG | 1 cut(s) | 335 |
| CseI | GACGC | 1 cut(s) | 335 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 115, 150 |
| CviAII | CATG | 2 cut(s) | 346, 370 |
| CviJI | RGCY | 2 cut(s) | 106, 353 |
| CviKI_1 | RGCY | 2 cut(s) | 106, 353 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DpnI | GATC | 1 cut(s) | 72 |
| DpnII | GATC | 1 cut(s) | 70 |
| Eco88I | CYCGRG | 1 cut(s) | 138 |
| Esp3I | CGTCTC | 1 cut(s) | 318 |
| FaeI | CATG | 2 cut(s) | 349, 373 |
| FaqI | GGGAC | 1 cut(s) | 259 |
| FatI | CATG | 2 cut(s) | 345, 369 |
| FblI | GTMKAC | 1 cut(s) | 214 |
| Fnu4HI | GCNGC | 2 cut(s) | 104, 282 |
| FokI | GGATG | 1 cut(s) | 302 |
| Fsp4HI | GCNGC | 2 cut(s) | 104, 282 |
| GluI | GCNGC | 2 cut(s) | 104, 282 |
| HgaI | GACGC | 1 cut(s) | 335 |
| Hin1II | CATG | 2 cut(s) | 349, 373 |
| HincII | GTYRAC | 1 cut(s) | 309 |
| HindII | GTYRAC | 1 cut(s) | 309 |
| HinfI | GANTC | 1 cut(s) | 233 |
| HpaI | GTTAAC | 1 cut(s) | 309 |
| Hpy166II | GTNNAC | 3 cut(s) | 215, 309, 415 |
| Hpy188III | TCNNGA | 4 cut(s) | 24, 68, 140, 341 |
| Hpy8I | GTNNAC | 3 cut(s) | 215, 309, 415 |
| HpyCH4III | ACNGT | 2 cut(s) | 385, 419 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 103, 179 |
| Hsp92II | CATG | 2 cut(s) | 349, 373 |
| KspAI | GTTAAC | 1 cut(s) | 309 |
| Kzo9I | GATC | 1 cut(s) | 70 |
| LpnPI | CCDG | 6 cut(s) | 9, 19, 92, 348, 408, 459 |
| Lsp1109I | GCAGC | 2 cut(s) | 115, 293 |
| LweI | GCATC | 1 cut(s) | 73 |
| MalI | GATC | 1 cut(s) | 72 |
| MboI | GATC | 1 cut(s) | 70 |
| MluCI | AATT | 8 cut(s) | 12, 19, 57, 171, 238, 272, 402, 429 |
| MnlI | CCTC | 2 cut(s) | 139, 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 336 |
| MseI | TTAA | 3 cut(s) | 56, 87, 308 |
| MspA1I | CMGCKG | 1 cut(s) | 106 |
| Mva1269I | GAATGC | 1 cut(s) | 179 |
| NdeII | GATC | 1 cut(s) | 70 |
| NlaIII | CATG | 2 cut(s) | 349, 373 |
| NlaIV | GGNNCC | 1 cut(s) | 266 |
| NspI | RCATGY | 1 cut(s) | 373 |
| PaeR7I | CTCGAG | 1 cut(s) | 138 |
| PciI | ACATGT | 1 cut(s) | 369 |
| PctI | GAATGC | 1 cut(s) | 179 |
| PdmI | GAANNNNTTC | 1 cut(s) | 336 |
| PfeI | GAWTC | 1 cut(s) | 233 |
| PkrI | GCNGC | 2 cut(s) | 105, 283 |
| PscI | ACATGT | 1 cut(s) | 369 |
| PsiI | TTATAA | 1 cut(s) | 11 |
| PspN4I | GGNNCC | 1 cut(s) | 266 |
| PstNI | CAGNNNCTG | 1 cut(s) | 335 |
| PvuII | CAGCTG | 1 cut(s) | 106 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| SaqAI | TTAA | 3 cut(s) | 56, 87, 308 |
| SatI | GCNGC | 2 cut(s) | 104, 282 |
| Sau3AI | GATC | 1 cut(s) | 70 |
| SetI | ASST | 7 cut(s) | 108, 131, 153, 321, 337, 401, 448 |
| SfaNI | GCATC | 1 cut(s) | 73 |
| Sfr274I | CTCGAG | 1 cut(s) | 138 |
| SlaI | CTCGAG | 1 cut(s) | 138 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| Sse9I | AATT | 8 cut(s) | 12, 19, 57, 171, 238, 272, 402, 429 |
| SsiI | CCGC | 1 cut(s) | 205 |
| SspI | AATATT | 1 cut(s) | 379 |
| TaaI | ACNGT | 2 cut(s) | 385, 419 |
| TaqI | TCGA | 2 cut(s) | 139, 277 |
| TasI | AATT | 8 cut(s) | 12, 19, 57, 171, 238, 272, 402, 429 |
| TfiI | GAWTC | 1 cut(s) | 233 |
| Tru1I | TTAA | 3 cut(s) | 56, 87, 308 |
| Tru9I | TTAA | 3 cut(s) | 56, 87, 308 |
| TscAI | CASTG | 2 cut(s) | 190, 291 |
| TseI | GCWGC | 2 cut(s) | 103, 281 |
| TspDTI | ATGAA | 2 cut(s) | 31, 467 |
| TspRI | CASTG | 2 cut(s) | 190, 291 |
| XapI | RAATTY | 3 cut(s) | 19, 238, 272 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XhoI | CTCGAG | 1 cut(s) | 138 |
| XmiI | GTMKAC | 1 cut(s) | 214 |
| XmnI | GAANNNNTTC | 1 cut(s) | 336 |