Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018115

Physical Location & Seq

Genomic Coordinates Reverse (-)

14649039 .. 14653550

Gene Structure 4512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG124000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGACCAAGAACTGTGACTGCTGATACAACAGCTCCAAGTGTTCCACATAATGAATCGACAATGTCCCTTAGGTTAAGCAGTCGCCAGATTACCCTTCTGCTTTCATTTATCTGGGCACACTCCATCTCCCCTTTAAATACGCCTGAAAACTATCAAGCAATTGCTCATACCTACAGCCTTGTGTTGCTATATGCTCGGACTAAGACCGACTCCGATTCGCTTGCGAGCTTCATCGACCCACAAACTCAGAACCAGCCGATTCCCAAGCTAGAGGACTTTCTCGACAACTCGGAGACGCAGGACTTGTCGCTGACCCAAATCTACGACCAGGGCTCGGCCTACTTTGGTGACCACCACCAGAACCAGGATCTCAAGGTTATTACTGGGTTCCAAGCCTTTTCGGCTAACTCGGGCTCCGAGGTGGAGGACTCGGCATCCATGGCCAACTCAGCTCGCTTGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

155

Amino Acids

17.21

Weight (kDa)

5.0

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018115)

Species	Orthologous Gene IDs
malus_domestica	MD07G1013300.v1.1
rosa_chinensis	RchiOBHm_Chr5g0079171
rosa_laevigata	RLG00000030645
rosa_multiflora	Rmu_sc0011280.1_g000004
rosa_samantha	Rh5BG539500 Rh6BG125300 Rh6CG124000 Rh6CG124100 Rh6CG160700 Rh6CG160800
rosa_wichuraiana	Rw0G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	444
AfiI	CCNNNNNNNGG	2 cut(s)	337, 367
AjnI	CCWGG	2 cut(s)	330, 366
AluBI	AGCT	4 cut(s)	35, 231, 271, 455
AluI	AGCT	4 cut(s)	35, 231, 271, 455
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	412
AoxI	GGCC	2 cut(s)	339, 444
AspLEI	GCGC	1 cut(s)	465
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	338, 419
BccI	CCATC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	2 cut(s)	332, 368
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	404
Bme1390I	CCNGG	2 cut(s)	332, 368
BmeT110I	CYCGRG	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	392, 418
BmrFI	CCNGG	2 cut(s)	332, 368
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	446
BmuI	ACTGGG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	331, 420, 441
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 113, 143, 401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 367
Bse1I	ACTGG	1 cut(s)	391
Bse21I	CCTNAGG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	332, 368
BseDI	CCNNGG	3 cut(s)	331, 420, 441
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	2 cut(s)	337, 367
BseMII	CTCAG	2 cut(s)	263, 465
BseNI	ACTGG	1 cut(s)	391
BseSI	GKGCMC	1 cut(s)	121
BshFI	GGCC	2 cut(s)	341, 446
BsiHKCI	CYCGRG	1 cut(s)	412
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	337, 367
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	341, 446
BsoBI	CYCGRG	1 cut(s)	412
Bsp1286I	GDGCHC	3 cut(s)	121, 338, 419
Bsp143I	GATC	1 cut(s)	370
Bsp19I	CCATGG	1 cut(s)	441
BspANI	GGCC	2 cut(s)	341, 446
BspCNI	CTCAG	2 cut(s)	262, 464
BspLI	GGNNCC	2 cut(s)	392, 418
BspPI	GGATC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	331, 420, 441
BssMI	GATC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	332, 368
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	4 cut(s)	225, 229, 457, 461
BstDEI	CTNAG	4 cut(s)	71, 204, 249, 451
BstDSI	CCRYGG	1 cut(s)	441
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 443, 452
BstNI	CCWGG	2 cut(s)	332, 368
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	330, 366
BstSFI	CTRYAG	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	341, 446
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	437
Cac8I	GCNNGC	4 cut(s)	225, 229, 457, 461
CfoI	GCGC	1 cut(s)	465
CseI	GACGC	1 cut(s)	307
CviAII	CATG	1 cut(s)	442
DdeI	CTNAG	4 cut(s)	71, 204, 249, 451
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	2 cut(s)	338, 419
Eco81I	CCTNAGG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	412
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	330, 366
EcoT14I	CCWWGG	1 cut(s)	441
EcoT38I	GRGCYC	2 cut(s)	338, 419
ErhI	CCWWGG	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	1 cut(s)	445
FaiI	YATR	5 cut(s)	51, 171, 193, 195, 443
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	1 cut(s)	441
FokI	GGATG	1 cut(s)	424
FriOI	GRGCYC	2 cut(s)	338, 419
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	341, 446
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HinfI	GANTC	5 cut(s)	56, 212, 218, 262, 431
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	5 cut(s)	201, 217, 252, 295, 421
Hpy188III	TCNNGA	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 443, 452
HpyF3I	CTNAG	4 cut(s)	71, 204, 249, 451
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	40, 422
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	16, 350
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	3 cut(s)	121, 338, 419
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	2 cut(s)	206, 425
MnlI	CCTC	3 cut(s)	268, 415, 421
Mox20I	TGGCCA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	2 cut(s)	77, 137
Msp20I	TGGCCA	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	332, 368
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	332, 368
MwoI	GCNNNNNNNGC	3 cut(s)	404, 443, 452
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	2 cut(s)	392, 418
NmeAIII	GCCGAG	2 cut(s)	317, 413
NmuCI	GTSAC	2 cut(s)	16, 350
PfeI	GAWTC	3 cut(s)	56, 218, 262
PflFI	GACNNNGTC	1 cut(s)	64
PleI	GAGTC	2 cut(s)	206, 425
PpsI	GAGTC	2 cut(s)	206, 425
Psp6I	CCWGG	2 cut(s)	330, 366
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	330, 366
PspN4I	GGNNCC	2 cut(s)	392, 418
PsuI	RGATCY	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	77, 137
Sau3AI	GATC	1 cut(s)	370
SchI	GAGTC	2 cut(s)	206, 425
ScrFI	CCNGG	2 cut(s)	332, 368
SduI	GDGCHC	3 cut(s)	121, 338, 419
SetI	ASST	8 cut(s)	37, 77, 176, 233, 273, 381, 426, 457
SfaNI	GCATC	1 cut(s)	446
SfcI	CTRYAG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	162
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	330, 366
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	59, 237, 285
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	56, 218, 262
Tru1I	TTAA	2 cut(s)	77, 137
Tru9I	TTAA	2 cut(s)	77, 137
TseFI	GTSAC	2 cut(s)	16, 350
Tsp45I	GTSAC	2 cut(s)	16, 350
TspDTI	ATGAA	3 cut(s)	69, 96, 223
Tth111I	GACNNNGTC	1 cut(s)	64
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.