Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0019337

Physical Location & Seq

Genomic Coordinates Reverse (-)

65038206 .. 65047224

Gene Structure 9019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGCATTCGGGAATCAGACGGTGGAGGGAGAGGAACAAATGGGTGCGAGAGCGCCGGATCACTGAGGTTCACGATCGGAGGAGAAGGAATGTTTTTGAAGGATGCCAGATATCTACATGGAAGACCTTTGCGAATATCAAGGATGAAGAAATTGGTGATTGGCATCAGTGTAGAGGAATAGATTTCAAAATGCCTCTTCTGGGCTACCTGCAAGAAGATGGCAATGTTGTTGGAGCAAATAAATTGGGAAAAGGCTCAGCTGCTTTAGCTGATTTGGGTGAGGCTGAAGAGAAAGAACATGTTGATGATTTGAAGTTCAAGGATTTGGCTGCCAAAATTGCAGGTCGGATTTTGTTTTTCATTATTTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

126

Amino Acids

14.57

Weight (kDa)

9.23

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019337)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316721
rosa_laevigata	RLG00000030649
rosa_roxburghii	Rroxscaffold_4G00330850 Rroxscaffold_5G00374640
rosa_rugosa	Rorug01G0012500
rosa_samantha	Rh1CG020800 Rh1DG020000
rosa_wichuraiana	Rw1G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	219, 335
AclWI	GGATC	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	4 cut(s)	101, 190, 316, 322
AluBI	AGCT	2 cut(s)	263, 272
AluI	AGCT	2 cut(s)	263, 272
AlwI	GGATC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	263, 332
AspLEI	GCGC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	170, 293
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	250, 319
BccI	CCATC	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	58
BfuAI	ACCTGC	2 cut(s)	219, 335
BisI	GCNGC	2 cut(s)	264, 333
BlpI	GCTNAGC	1 cut(s)	259
BlsI	GCNGC	2 cut(s)	265, 334
BmsI	GCATC	2 cut(s)	95, 175
BpiI	GAAGAC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	165
BseGI	GGATG	2 cut(s)	110, 151
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	57, 273
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	250, 319
Bsh1285I	CGRYCG	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	60, 76
Bsp1720I	GCTNAGC	1 cut(s)	259
BspCNI	CTCAG	2 cut(s)	58, 272
BspMI	ACCTGC	2 cut(s)	219, 335
BspPI	GGATC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	232
BssMI	GATC	2 cut(s)	60, 76
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	204, 285
BstDEI	CTNAG	2 cut(s)	66, 259
BstF5I	GGATG	2 cut(s)	110, 151
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	2 cut(s)	63, 79
BstMBI	GATC	2 cut(s)	60, 76
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 341
BstNSI	RCATGY	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	250, 319
BstV2I	GAAGAC	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	110, 151
BtsIMutI	CAGTG	2 cut(s)	63, 176
BveI	ACCTGC	2 cut(s)	219, 335
CfoI	GCGC	1 cut(s)	57
CviAII	CATG	2 cut(s)	120, 302
CviJI	RGCY	6 cut(s)	207, 258, 263, 272, 287, 332
CviKI_1	RGCY	6 cut(s)	207, 258, 263, 272, 287, 332
DdeI	CTNAG	2 cut(s)	66, 259
DpnI	GATC	2 cut(s)	62, 78
DpnII	GATC	2 cut(s)	60, 76
Eam1104I	CTCTTC	2 cut(s)	204, 285
EarI	CTCTTC	2 cut(s)	204, 285
Eco32I	GATATC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	309
EcoRV	GATATC	1 cut(s)	114
FaeI	CATG	2 cut(s)	123, 305
FaiI	YATR	2 cut(s)	121, 303
FatI	CATG	2 cut(s)	119, 301
Fnu4HI	GCNGC	2 cut(s)	264, 333
FokI	GGATG	2 cut(s)	117, 158
Fsp4HI	GCNGC	2 cut(s)	264, 333
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	264, 333
HaeII	RGCGCY	1 cut(s)	58
HapII	CCGG	1 cut(s)	58
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	123, 305
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	2 cut(s)	170, 293
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	20, 81, 351
Hpy188III	TCNNGA	2 cut(s)	12, 74
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	81, 95
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	214, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 341
HpyF3I	CTNAG	2 cut(s)	66, 259
Hsp92II	CATG	2 cut(s)	123, 305
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	2 cut(s)	60, 76
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	5 cut(s)	71, 122, 188, 224, 330
Lsp1109I	GCAGC	2 cut(s)	250, 319
LweI	GCATC	2 cut(s)	95, 175
MalI	GATC	2 cut(s)	62, 78
MboI	GATC	2 cut(s)	60, 76
MboII	GAAGA	5 cut(s)	136, 161, 191, 230, 302
MluCI	AATT	3 cut(s)	153, 245, 339
MmeI	TCCRAC	2 cut(s)	214, 329
MnlI	CCTC	7 cut(s)	21, 27, 61, 75, 170, 207, 277
MseI	TTAA	1 cut(s)	376
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	269, 341
NdeII	GATC	2 cut(s)	60, 76
NlaIII	CATG	2 cut(s)	123, 305
NspI	RCATGY	1 cut(s)	305
PciI	ACATGT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	265, 334
Ple19I	CGATCG	1 cut(s)	79
PscI	ACATGT	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	2 cut(s)	264, 333
Sau3AI	GATC	2 cut(s)	60, 76
SetI	ASST	6 cut(s)	72, 131, 213, 265, 274, 349
SfaNI	GCATC	2 cut(s)	95, 175
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	153, 245, 339
TaaI	ACNGT	1 cut(s)	24
TasI	AATT	3 cut(s)	153, 245, 339
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TscAI	CASTG	2 cut(s)	70, 176
TseI	GCWGC	2 cut(s)	263, 332
TspDTI	ATGAA	3 cut(s)	17, 162, 352
TspRI	CASTG	2 cut(s)	70, 176
XceI	RCATGY	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.