Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0019337

Physical Location & Seq

Genomic Coordinates Reverse (-)

3170612 .. 3171085

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGGATGAAGAAATTCATCAGCGTAGAGGAATAGATTTCAAAATGCCTCTTCTGGGCTACCTGCAAGAAGATGGCAATGTTGGAGCAAAAAAGGGATTGGGATATTGTCAGGTTGTTCAATCATTATACGCTCTGTTCAATCTCACACACACACACACACTATGGTCTCTAGAAGGGTTCTATGAAGAACTCCCTATTGCAAAAGAAATTGCTGCAGTGAATTCCGCTACTGTATCCGTCAGGAAGACACACACACTATGGTCTCTAGAAGGGTTCTATGAAGAACTCCCTATTGCAAAAGAAATTGCTGCAGTGAATTCCGCAACTGTATCCGTCAGGAAGTGCCCTGAGCTTAGAATCTTCTATATTCGCAAATGGATTTACCTGATCATGTTGTTGGCACAAATTAACAACACACTGACGACTGGTTTGCTCTGCAGAACAGCTGAGGAGCACCCTGAGATTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004556 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0005984 GO:0005985 GO:0005987 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016160 GO:0016787 GO:0016798 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046352 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

157

Amino Acids

17.9

Weight (kDa)

6.21

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019337)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0316721
rosa_laevigata	RLG00000030649
rosa_roxburghii	Rroxscaffold_4G00330850 Rroxscaffold_5G00374640
rosa_rugosa	Rorug01G0012500
rosa_samantha	Rh1CG020800 Rh1DG020000
rosa_wichuraiana	Rw1G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	2 cut(s)	228, 324
AcsI	RAATTY	3 cut(s)	15, 223, 319
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	43, 122, 142
AluBI	AGCT	2 cut(s)	355, 449
AluI	AGCT	2 cut(s)	355, 449
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	174, 270
ApeKI	GCWGC	2 cut(s)	215, 311
ApoI	RAATTY	3 cut(s)	15, 223, 319
ArsI	GACNNNNNNTTYG	2 cut(s)	415, 447
Asp700I	GAANNNNTTC	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	202, 298
BccI	CCATC	1 cut(s)	68
BcgI	CGANNNNNNTGC	2 cut(s)	415, 449
BciVI	GTATCC	2 cut(s)	247, 343
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	174, 270
BfaI	CTAG	2 cut(s)	173, 269
BfmI	CTRYAG	3 cut(s)	216, 312, 439
BfuAI	ACCTGC	1 cut(s)	72
BfuI	GTATCC	2 cut(s)	247, 343
BisI	GCNGC	2 cut(s)	216, 312
BlsI	GCNGC	2 cut(s)	217, 313
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	2 cut(s)	351, 450
BsaI	GGTCTC	2 cut(s)	174, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	342, 441, 453
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	202, 298
BsiHKAI	GWGCWC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	174, 270
Bso31I	GGTCTC	2 cut(s)	174, 270
Bsp1286I	GDGCHC	2 cut(s)	350, 459
Bsp143I	GATC	1 cut(s)	390
BspACI	CCGC	2 cut(s)	228, 324
BspCNI	CTCAG	3 cut(s)	343, 442, 454
BspMAI	CTGCAG	3 cut(s)	220, 316, 443
BspMI	ACCTGC	1 cut(s)	72
BspTNI	GGTCTC	2 cut(s)	174, 270
BsrDI	GCAATG	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	235, 331
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	351, 356, 450, 462
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	2 cut(s)	174, 270
BstMBI	GATC	1 cut(s)	390
BstSFI	CTRYAG	3 cut(s)	216, 312, 439
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	202, 298
BstV2I	GAAGAC	1 cut(s)	254
BsuI	GTATCC	2 cut(s)	247, 343
BtsCI	GGATG	1 cut(s)	13
BtsI	GCAGTG	2 cut(s)	225, 321
BtsIMutI	CAGTG	3 cut(s)	225, 321, 419
BveI	ACCTGC	1 cut(s)	72
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	3 cut(s)	60, 355, 449
CviKI_1	RGCY	3 cut(s)	60, 355, 449
DdeI	CTNAG	4 cut(s)	351, 356, 450, 462
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	174, 270
EcoRI	GAATTC	2 cut(s)	223, 319
FaeI	CATG	1 cut(s)	397
FaiI	YATR	8 cut(s)	130, 166, 186, 262, 282, 369, 395, 472
FatI	CATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	2 cut(s)	216, 312
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	216, 312
FspBI	CTAG	2 cut(s)	173, 269
GluI	GCNGC	2 cut(s)	216, 312
Hin1II	CATG	1 cut(s)	397
HinfI	GANTC	2 cut(s)	360, 466
Hpy188III	TCNNGA	4 cut(s)	173, 244, 269, 340
HpyAV	CCTTC	2 cut(s)	170, 266
HpyCH4III	ACNGT	2 cut(s)	235, 331
HpyCH4V	TGCA	6 cut(s)	67, 203, 218, 299, 314, 441
HpyF3I	CTNAG	4 cut(s)	351, 356, 450, 462
Hsp92II	CATG	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	2 cut(s)	86, 454
LpnPI	CCDG	8 cut(s)	41, 77, 98, 229, 325, 363, 401, 414
Lsp1109I	GCAGC	2 cut(s)	202, 298
MaeI	CTAG	2 cut(s)	173, 269
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	7 cut(s)	23, 44, 83, 200, 259, 296, 355
MhlI	GDGCHC	2 cut(s)	350, 459
MluCI	AATT	6 cut(s)	15, 210, 223, 306, 319, 408
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	23, 60, 445
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	449
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	360, 466
PkrI	GCNGC	2 cut(s)	217, 313
PstI	CTGCAG	3 cut(s)	220, 316, 443
PvuII	CAGCTG	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	216, 312
Sau3AI	GATC	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	350, 459
SetI	ASST	5 cut(s)	66, 117, 357, 390, 451
SfcI	CTRYAG	3 cut(s)	216, 312, 439
Sse9I	AATT	6 cut(s)	15, 210, 223, 306, 319, 408
SsiI	CCGC	2 cut(s)	228, 324
SspMI	CTAG	2 cut(s)	173, 269
TaaI	ACNGT	2 cut(s)	235, 331
TasI	AATT	6 cut(s)	15, 210, 223, 306, 319, 408
TfiI	GAWTC	2 cut(s)	360, 466
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	225, 321, 426
TseI	GCWGC	2 cut(s)	215, 311
TspDTI	ATGAA	5 cut(s)	8, 17, 24, 201, 297
TspGWI	ACGGA	2 cut(s)	229, 325
TspRI	CASTG	3 cut(s)	225, 321, 426
XapI	RAATTY	3 cut(s)	15, 223, 319
XbaI	TCTAGA	2 cut(s)	172, 268
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	2 cut(s)	173, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.