alpha-amylase 3
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0316721 |
| rosa_laevigata | RLG00000030649 |
| rosa_roxburghii | Rroxscaffold_4G00330850 Rroxscaffold_5G00374640 |
| rosa_rugosa | Rorug01G0012500 |
| rosa_samantha | Rh1CG020800 Rh1DG020000 |
| rosa_wichuraiana | Rw1G001520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 246 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 57 |
| AciI | CCGC | 1 cut(s) | 112 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 57, 97, 230 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AluBI | AGCT | 1 cut(s) | 294 |
| AluI | AGCT | 1 cut(s) | 294 |
| AsuHPI | GGTGA | 1 cut(s) | 197 |
| BbsI | GAAGAC | 1 cut(s) | 158 |
| BccI | CCATC | 1 cut(s) | 242 |
| BfaI | CTAG | 1 cut(s) | 14 |
| BfuAI | ACCTGC | 1 cut(s) | 246 |
| BmiI | GGNNCC | 1 cut(s) | 89 |
| BmsI | GCATC | 3 cut(s) | 105, 122, 202 |
| BpiI | GAAGAC | 1 cut(s) | 158 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| BsaBI | GATNNNNATC | 1 cut(s) | 192 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 57, 97, 230 |
| Bse3DI | GCAATG | 2 cut(s) | 107, 259 |
| Bse8I | GATNNNNATC | 1 cut(s) | 192 |
| BseGI | GGATG | 3 cut(s) | 79, 120, 178 |
| BseJI | GATNNNNATC | 1 cut(s) | 192 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 57, 97, 230 |
| BseMI | GCAATG | 2 cut(s) | 107, 259 |
| BseMII | CTCAG | 1 cut(s) | 142 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BsiSI | CCGG | 1 cut(s) | 91 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 57, 97, 230 |
| BspACI | CCGC | 1 cut(s) | 112 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspLI | GGNNCC | 1 cut(s) | 89 |
| BspMI | ACCTGC | 1 cut(s) | 246 |
| BsrDI | GCAATG | 2 cut(s) | 107, 259 |
| Bst6I | CTCTTC | 1 cut(s) | 231 |
| BstDEI | CTNAG | 1 cut(s) | 128 |
| BstF5I | GGATG | 3 cut(s) | 79, 120, 178 |
| BstV2I | GAAGAC | 1 cut(s) | 158 |
| BtsCI | GGATG | 3 cut(s) | 79, 120, 178 |
| BveI | ACCTGC | 1 cut(s) | 246 |
| CviAII | CATG | 1 cut(s) | 147 |
| CviJI | RGCY | 4 cut(s) | 49, 94, 234, 294 |
| CviKI_1 | RGCY | 4 cut(s) | 49, 94, 234, 294 |
| DdeI | CTNAG | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 1 cut(s) | 231 |
| EarI | CTCTTC | 1 cut(s) | 231 |
| Eco32I | GATATC | 1 cut(s) | 141 |
| EcoRV | GATATC | 1 cut(s) | 141 |
| FaeI | CATG | 1 cut(s) | 150 |
| FaiI | YATR | 1 cut(s) | 148 |
| FatI | CATG | 1 cut(s) | 146 |
| FokI | GGATG | 3 cut(s) | 86, 127, 185 |
| FspBI | CTAG | 1 cut(s) | 14 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HapII | CCGG | 1 cut(s) | 91 |
| Hin1II | CATG | 1 cut(s) | 150 |
| HinfI | GANTC | 1 cut(s) | 21 |
| HpaII | CCGG | 1 cut(s) | 91 |
| HphI | GGTGA | 1 cut(s) | 197 |
| Hpy188I | TCNGA | 2 cut(s) | 131, 288 |
| Hpy188III | TCNNGA | 1 cut(s) | 14 |
| HpyAV | CCTTC | 1 cut(s) | 63 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 161, 241 |
| HpyF3I | CTNAG | 1 cut(s) | 128 |
| Hsp92II | CATG | 1 cut(s) | 150 |
| LmnI | GCTCC | 1 cut(s) | 260 |
| LpnPI | CCDG | 7 cut(s) | 10, 64, 80, 104, 149, 215, 251 |
| LweI | GCATC | 3 cut(s) | 105, 122, 202 |
| MaeI | CTAG | 1 cut(s) | 14 |
| MboII | GAAGA | 4 cut(s) | 163, 188, 218, 257 |
| MluCI | AATT | 1 cut(s) | 180 |
| MmeI | TCCRAC | 1 cut(s) | 238 |
| MnlI | CCTC | 5 cut(s) | 91, 134, 137, 197, 234 |
| MspA1I | CMGCKG | 1 cut(s) | 294 |
| MspI | CCGG | 1 cut(s) | 91 |
| NlaIII | CATG | 1 cut(s) | 150 |
| NlaIV | GGNNCC | 1 cut(s) | 89 |
| PfeI | GAWTC | 1 cut(s) | 21 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 57 |
| PspN4I | GGNNCC | 1 cut(s) | 89 |
| PvuII | CAGCTG | 1 cut(s) | 294 |
| SetI | ASST | 3 cut(s) | 158, 240, 296 |
| SfaNI | GCATC | 3 cut(s) | 105, 122, 202 |
| Sse9I | AATT | 1 cut(s) | 180 |
| SsiI | CCGC | 1 cut(s) | 112 |
| SspMI | CTAG | 1 cut(s) | 14 |
| TaqI | TCGA | 1 cut(s) | 32 |
| TasI | AATT | 1 cut(s) | 180 |
| TfiI | GAWTC | 1 cut(s) | 21 |
| TspDTI | ATGAA | 2 cut(s) | 90, 189 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 57 |
| XbaI | TCTAGA | 1 cut(s) | 13 |
| XspI | CTAG | 1 cut(s) | 14 |