Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014622

Physical Location & Seq

Genomic Coordinates Forward (+)

67749452 .. 67749904

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030801

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAACTTTGTTGGGTGCTGGTTTGGGGCAATGCCGGTGTGCCATGAAGCTAGTGGACTAGTCGGGCAATATCGATTCGAGGGCCGAAGTGGCACTTTTGTTGTGTTTTTGGGGATCCAGAAACTGGTTCTTGCTTTGGTGTTTTGGAATTCAGTTGACATGAATTTGAAAGATGAGTCGTTTGTGATATTGGTTTGTGCTGCGCTTTCGTTGACTGAGTCTAGCTCTGCACTGGGGTTTGGCTGTGGGATTGTGCTGTTCTTGGTGCTGAAGTTGAGGCAGTTGGAGTTTTCGTCTTCTAGGTTTGGATCTACCAAACTGAAATCTGAATCAGCCATAACTGATGCAACTACTAGATTGATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0007034 GO:0008150 GO:0008509 GO:0009705 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0034486 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0090414 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

123

Amino Acids

13.28

Weight (kDa)

7.66

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_MOT1	PF16983	1 - 57	2.4e-12	Molybdate transporter of MFS superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80310
prunus_persica	Prupe.3G077200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0137081
rosa_laevigata	RLG00000019606 RLG00000023044 RLG00000027400 RLG00000030801
rosa_multiflora	Rmu_sc0001374.1_g000007
rosa_roxburghii	Rroxscaffold_6G00407600
rosa_rugosa	Rorug02G0337900
rosa_samantha	Rh2AG387000 Rh2BG393800 Rh2CG374300 Rh2DG409900 Rh5DG512600 Rh6BG303900
rosa_wichuraiana	Rw2G031670

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AclWI	GGATC	3 cut(s)	109, 122, 316
AcsI	RAATTY	2 cut(s)	148, 163
AcuI	CTGAAG	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	169
AhlI	ACTAGT	1 cut(s)	58
AluBI	AGCT	2 cut(s)	50, 225
AluI	AGCT	2 cut(s)	50, 225
AlwI	GGATC	3 cut(s)	109, 122, 316
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	148, 163
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	187
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	5 cut(s)	51, 59, 222, 300, 354
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	288
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bsa29I	ATCGAT	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	129, 237
Bse3DI	GCAATG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	129, 237
BseXI	GCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	124
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	114, 308
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	3 cut(s)	109, 122, 316
BsrDI	GCAATG	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	129, 237
BssAI	RCCGGY	1 cut(s)	34
BssMI	GATC	2 cut(s)	114, 308
BstDEI	CTNAG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	2 cut(s)	117, 311
BstMBI	GATC	2 cut(s)	114, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	114, 308
BstYI	RGATCY	2 cut(s)	114, 308
Bsu15I	ATCGAT	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	230
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	73
CviAII	CATG	2 cut(s)	44, 160
CviJI	RGCY	5 cut(s)	50, 84, 225, 243, 335
CviKI_1	RGCY	5 cut(s)	50, 84, 225, 243, 335
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	116, 310
DpnII	GATC	2 cut(s)	114, 308
Eco57I	CTGAAG	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	148
FaeI	CATG	2 cut(s)	47, 163
FaiI	YATR	3 cut(s)	45, 161, 338
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FatI	CATG	2 cut(s)	43, 159
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	5 cut(s)	51, 59, 222, 300, 354
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	2 cut(s)	47, 163
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	2 cut(s)	157, 213
HindII	GTYRAC	2 cut(s)	157, 213
HinfI	GANTC	4 cut(s)	75, 176, 218, 329
HpaII	CCGG	1 cut(s)	35
Hpy166II	GTNNAC	3 cut(s)	56, 157, 213
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	3 cut(s)	56, 157, 213
HpyCH4V	TGCA	2 cut(s)	230, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	47, 163
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	2 cut(s)	114, 308
LpnPI	CCDG	5 cut(s)	4, 48, 110, 131, 218
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	5 cut(s)	51, 59, 222, 300, 354
MalI	GATC	2 cut(s)	116, 310
MboI	GATC	2 cut(s)	114, 308
MboII	GAAGA	1 cut(s)	288
MflI	RGATCY	2 cut(s)	114, 308
MluCI	AATT	2 cut(s)	148, 163
MlyI	GAGTC	2 cut(s)	185, 227
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	2 cut(s)	73, 270
MspI	CCGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeII	GATC	2 cut(s)	114, 308
NlaIII	CATG	2 cut(s)	47, 163
NlaIV	GGNNCC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	75, 329
PflFI	GACNNNGTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	2 cut(s)	184, 226
PpsI	GAGTC	2 cut(s)	184, 226
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	114, 308
PsyI	GACNNNGTC	1 cut(s)	217
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	114, 308
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	185, 227
SetI	ASST	3 cut(s)	52, 227, 305
SfaNI	GCATC	1 cut(s)	334
SpeI	ACTAGT	1 cut(s)	58
Sse9I	AATT	2 cut(s)	148, 163
SspMI	CTAG	5 cut(s)	51, 59, 222, 300, 354
TaqI	TCGA	2 cut(s)	73, 78
TasI	AATT	2 cut(s)	148, 163
TfiI	GAWTC	2 cut(s)	75, 329
TscAI	CASTG	1 cut(s)	237
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	17, 60, 176
TspRI	CASTG	1 cut(s)	237
Tth111I	GACNNNGTC	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	148, 163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	5 cut(s)	51, 59, 222, 300, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.