Rh6BG303900

molybdate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014622
Physical Location & Seq
Reverse (-)
53436111 .. 53437002
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG303900.1

Sequence Viewer

Length: 291 bp
ATGAACTTTGTTGGGTGCTGGTTCGGGGCATTGCCGGTGTGCCATGGAGCTAGTGGACTAGTCGGGCAATACCGATTCGGGGCTAATCGGCTTCGAACCTGCTTCAACTTCGACGCCAACGACACCACGTTCCAGCGAAAGCTCTGCTTCTTCTCATTCAAATCTTTCAGCAATGGATCAAACTCATTTACTAAAATTGACGATGAAGAAGAAGCAGAGGAGCTTGGCCGAGATTTCTTCGAAATTGACATTATAAATGAAGCTGAATTGGGCCAAACTTCAGTGGTTTAA

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

4.55

Isoelectric Point (pI)

18.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_MOT1 PF16983 1 - 29 1e-07 Molybdate transporter of MFS superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014622)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80310
prunus_persica Prupe.3G077200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0137081
rosa_laevigata RLG00000019606 RLG00000023044 RLG00000027400 RLG00000030801
rosa_multiflora Rmu_sc0001374.1_g000007
rosa_roxburghii Rroxscaffold_6G00407600
rosa_rugosa Rorug02G0337900
rosa_samantha Rh2AG387000 Rh2BG393800 Rh2CG374300 Rh2DG409900 Rh5DG512600 Rh6BG303900
rosa_wichuraiana Rw2G031670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 226
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 2 cut(s) 106, 160
AhlI ACTAGT 1 cut(s) 58
AluBI AGCT 4 cut(s) 50, 142, 223, 263
AluI AGCT 4 cut(s) 50, 142, 223, 263
AlwI GGATC 1 cut(s) 184
AoxI GGCC 2 cut(s) 226, 271
AspS9I GGNCC 1 cut(s) 271
AsuII TTCGAA 2 cut(s) 94, 240
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 2 cut(s) 51, 59
BfuAI ACCTGC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 271
Bpu14I TTCGAA 2 cut(s) 94, 240
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 34
Bse3DI GCAATG 2 cut(s) 29, 178
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 2 cut(s) 29, 178
BseRI GAGGAG 1 cut(s) 233
BshFI GGCC 2 cut(s) 228, 273
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 2 cut(s) 228, 273
Bsp119I TTCGAA 2 cut(s) 94, 240
Bsp143I GATC 1 cut(s) 176
Bsp19I CCATGG 1 cut(s) 43
BspANI GGCC 2 cut(s) 228, 273
BspMI ACCTGC 1 cut(s) 107
BspPI GGATC 1 cut(s) 184
BspT104I TTCGAA 2 cut(s) 94, 240
BsrDI GCAATG 2 cut(s) 29, 178
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 114
BstBI TTCGAA 2 cut(s) 94, 240
BstDSI CCRYGG 1 cut(s) 43
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 228, 273
BtgI CCRYGG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 288
BveI ACCTGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 122
CviAII CATG 1 cut(s) 44
CviJI RGCY 8 cut(s) 50, 83, 91, 142, 223, 228, 263, 273
CviKI_1 RGCY 8 cut(s) 50, 83, 91, 142, 223, 228, 263, 273
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 1 cut(s) 47
FaiI YATR 2 cut(s) 45, 254
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 1 cut(s) 43
FspBI CTAG 2 cut(s) 51, 59
HaeIII GGCC 2 cut(s) 228, 273
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 47
HinfI GANTC 1 cut(s) 75
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 1 cut(s) 176
LmnI GCTCC 2 cut(s) 47, 220
LpnPI CCDG 4 cut(s) 4, 48, 112, 146
MaeI CTAG 2 cut(s) 51, 59
MaeII ACGT 1 cut(s) 128
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 4 cut(s) 142, 218, 221, 229
MluCI AATT 3 cut(s) 195, 243, 266
MnlI CCTC 1 cut(s) 211
MseI TTAA 1 cut(s) 289
MspI CCGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 43
NdeII GATC 1 cut(s) 176
NlaIII CATG 1 cut(s) 47
NmeAIII GCCGAG 1 cut(s) 254
NspV TTCGAA 2 cut(s) 94, 240
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 75
PsiI TTATAA 1 cut(s) 254
PspPI GGNCC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 289
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 1 cut(s) 271
SetI ASST 6 cut(s) 52, 101, 131, 144, 225, 265
SfuI TTCGAA 2 cut(s) 94, 240
SpeI ACTAGT 1 cut(s) 58
Sse9I AATT 3 cut(s) 195, 243, 266
SspMI CTAG 2 cut(s) 51, 59
StyI CCWWGG 1 cut(s) 43
TaiI ACGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 94, 111, 240
TasI AATT 3 cut(s) 195, 243, 266
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
TscAI CASTG 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 17, 219, 273
TspRI CASTG 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XspI CTAG 2 cut(s) 51, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.