Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014622

Physical Location & Seq

Genomic Coordinates Forward (+)

30253577 .. 30259925

Gene Structure 6349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATACAAGTGTGCTTGTCATCTCCTTCTTTCTTTTCCCTTGGTACCGAAACCCAGCAACAACTGCAACTTTTATTATTTCTCCATCTTCATGCAAACCCAAAAGACCCAAGAAGAAATTGACAGAAACTCATTTCAAGTCCAAAGAAGCTTTTCCAAAGCTGCAATCCAATCTTGAGAGTCATAGCCATGATAATGTGAGAGCTGACAGATTGAAAAAAGAAGTTGCGACGGACTCTCAACCCCGTCCCCGGCCGCGACCCGACGACTTGAGTCGGCGACCTGCTGGAATCCTCCGTCTGGCCACTTCACGGTGTCGCACCGGTGCCGTTCGATTGTGCTGGTTCGGGGCAATGCCGGTGTGCCATGGAGCCTGTGGGCTAGCTGGGCAGTACCGATTCGGGGGTAGGAGTGGCGCTTCTGTTGTGTTCTATGGAGTGCTTTTGCTTTTTGCTGGGATTGAATTGGTTATGGAGTCCAAGGCCATGAATTCGAAAGAGGAATCGTTTGTGATGTTGGTCAGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0007034 GO:0008150 GO:0008509 GO:0009705 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0034486 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0090414 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

176

Amino Acids

19.59

Weight (kDa)

9.98

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_MOT1	PF16983	113 - 158	2.2e-12	Molybdate transporter of MFS superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80310
prunus_persica	Prupe.3G077200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0137081
rosa_laevigata	RLG00000019606 RLG00000023044 RLG00000027400 RLG00000030801
rosa_multiflora	Rmu_sc0001374.1_g000007
rosa_roxburghii	Rroxscaffold_6G00407600
rosa_rugosa	Rorug02G0337900
rosa_samantha	Rh2AG387000 Rh2BG393800 Rh2CG374300 Rh2DG409900 Rh5DG512600 Rh6BG303900
rosa_wichuraiana	Rw2G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	2 cut(s)	45, 326
AccII	CGCG	1 cut(s)	259
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	2 cut(s)	254, 303
AcsI	RAATTY	1 cut(s)	490
AfaI	GTAC	2 cut(s)	47, 395
AfiI	CCNNNNNNNGG	4 cut(s)	252, 301, 312, 403
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	3 cut(s)	139, 217, 464
AluBI	AGCT	4 cut(s)	152, 163, 206, 386
AluI	AGCT	4 cut(s)	152, 163, 206, 386
AoxI	GGCC	3 cut(s)	254, 303, 483
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	490
AsiGI	ACCGGT	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	153
Asp718I	GGTACC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	419
AsuC2I	CCSGG	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	494
AsuNHI	GCTAGC	1 cut(s)	382
BaeI	ACNNNNGTAYC	1 cut(s)	30
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	2 cut(s)	45, 326
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	253
BfaI	CTAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	164, 257
BlsI	GCNGC	2 cut(s)	165, 258
Bme1390I	CCNGG	1 cut(s)	253
BmiI	GGNNCC	3 cut(s)	47, 328, 373
BmrFI	CCNGG	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	386
BoxI	GACNNNNGTC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	197, 292
BpuMI	CCSGG	1 cut(s)	253
BsaJI	CCNNGG	4 cut(s)	41, 251, 367, 480
BsaWI	WCCGGW	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 301, 312, 403
Bse118I	RCCGGY	2 cut(s)	323, 358
Bse3DI	GCAATG	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	41, 251, 367, 480
BseLI	CCNNNNNNNGG	4 cut(s)	252, 301, 312, 403
BseMI	GCAATG	1 cut(s)	360
BseX3I	CGGCCG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	150
BseYI	CCCAGC	3 cut(s)	55, 386, 455
Bsh1236I	CGCG	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	256, 305, 485
BshNI	GGYRCC	2 cut(s)	45, 326
BshTI	ACCGGT	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	253, 324, 359
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	4 cut(s)	252, 301, 312, 403
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	256, 305, 485
Bsp119I	TTCGAA	1 cut(s)	494
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	3 cut(s)	256, 305, 485
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	47, 328, 373
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	386
BspT104I	TTCGAA	1 cut(s)	494
BspT107I	GGYRCC	2 cut(s)	45, 326
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	323, 358
BssAI	RCCGGY	2 cut(s)	323, 358
BssECI	CCNNGG	4 cut(s)	41, 251, 367, 480
BssT1I	CCWWGG	3 cut(s)	41, 367, 480
Bst4CI	ACNGT	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 388
BstPAI	GACNNNNGTC	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	251
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	256, 305, 485
BtgI	CCRYGG	1 cut(s)	367
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	2 cut(s)	323, 358
Csp6I	GTAC	2 cut(s)	46, 394
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	4 cut(s)	93, 191, 368, 487
CviQI	GTAC	2 cut(s)	46, 394
EaeI	YGGCCR	2 cut(s)	254, 303
EagI	CGGCCG	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	254
Eco130I	CCWWGG	3 cut(s)	41, 367, 480
Eco52I	CGGCCG	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	490
EcoT14I	CCWWGG	3 cut(s)	41, 367, 480
ErhI	CCWWGG	3 cut(s)	41, 367, 480
FaeI	CATG	4 cut(s)	96, 194, 371, 490
FaiI	YATR	7 cut(s)	94, 186, 192, 369, 435, 473, 488
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	4 cut(s)	92, 190, 367, 486
Fnu4HI	GCNGC	2 cut(s)	164, 257
Fsp4HI	GCNGC	2 cut(s)	164, 257
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	2 cut(s)	164, 257
GsaI	CCCAGC	3 cut(s)	59, 390, 459
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	3 cut(s)	256, 305, 485
HapII	CCGG	3 cut(s)	253, 324, 359
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	4 cut(s)	96, 194, 371, 490
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	7 cut(s)	181, 236, 274, 291, 399, 476, 503
HpaII	CCGG	3 cut(s)	253, 324, 359
Hpy188III	TCNNGA	1 cut(s)	176
Hpy99I	CGWCG	2 cut(s)	235, 269
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	315
HpyCH4V	TGCA	3 cut(s)	68, 96, 166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 388
Hsp92II	CATG	4 cut(s)	96, 194, 371, 490
HspAI	GCGC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	383
MboII	GAAGA	2 cut(s)	81, 127
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	3 cut(s)	119, 464, 490
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	4 cut(s)	190, 230, 283, 485
MnlI	CCTC	2 cut(s)	305, 493
Mox20I	TGGCCA	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	305
MslI	CAYNNNNRTG	3 cut(s)	91, 189, 195
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	3 cut(s)	253, 324, 359
MspR9I	CCNGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	65, 388
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	367
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	4 cut(s)	96, 194, 371, 490
NlaIV	GGNNCC	3 cut(s)	47, 328, 373
NspV	TTCGAA	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	3 cut(s)	291, 399, 503
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	165, 258
PleI	GAGTC	4 cut(s)	189, 230, 282, 484
PpsI	GAGTC	4 cut(s)	189, 230, 282, 484
PshAI	GACNNNNGTC	1 cut(s)	273
PspFI	CCCAGC	3 cut(s)	55, 386, 455
PspN4I	GGNNCC	3 cut(s)	47, 328, 373
RsaI	GTAC	2 cut(s)	47, 395
RsaNI	GTAC	2 cut(s)	46, 394
RseI	CAYNNNNRTG	3 cut(s)	91, 189, 195
SatI	GCNGC	2 cut(s)	164, 257
SchI	GAGTC	4 cut(s)	190, 230, 283, 485
ScrFI	CCNGG	1 cut(s)	253
SetI	ASST	5 cut(s)	154, 165, 208, 286, 388
SfuI	TTCGAA	1 cut(s)	494
SgrAI	CRCCGGYG	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	91, 189, 195
SmlI	CTYRAG	2 cut(s)	176, 271
SmoI	CTYRAG	2 cut(s)	176, 271
Sse9I	AATT	3 cut(s)	119, 464, 490
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	3 cut(s)	41, 367, 480
TaaI	ACNGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	334, 494
TasI	AATT	3 cut(s)	119, 464, 490
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	3 cut(s)	291, 399, 503
TseI	GCWGC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	81, 503
TspGWI	ACGGA	2 cut(s)	248, 287
XapI	RAATTY	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.