Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014622

Physical Location & Seq

Genomic Coordinates Reverse (-)

41995255 .. 41996447

Gene Structure 1193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0337900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGTTCACCAGCCAGTTATGCAAGTGTATCCATTTGGCATTGATCCTTATGTTGGCAGCCTGGTCATCTAAAGCCACCTCTCGCAATCTCCAAGATGTATCAATGTTTGCAAGATACGAGCAATGGATGGCACGCTATGGACGTGTGTTCAACGACATTAACGAGAAGGACAAGCGATTCAATATATTCAAAGAAAATGTGAAATTTATAGAATCTTCCAATGATGCAGGAAACAAACTCTATAAATTGAGTGTGAATCAATTTGCAGACCTTACAAATGAAGAATTCACAGCCTCCAAAAATCGGTTCAAAGGGCATGAGTGTTCCACAAAGACCACTACTTTTAGGTATGAAAATGCTAGTTTGCCGGCTACAATGGACAGGAGACAGAAAGGAGCTGATGCTAACTATATTCTAACTGCCACAAATGTGCAAACAAAATGTGTACAGGGTCTTGTTGGGCGTTCTCAGCCGTGGCAGCCCAAGGCTGTTGCTCAACTTACAATTGGTAAATTGATTTCTTTGTCTAAGCAAGAGCTAGTTGACTGTGATGTCAATGGTGAAGCCCAAGGCTGTTGGGGTGGCTTAATGGATGATGCCTTTCGGTTCATCTATGAAAACCATGGACTTAGCACCGAGGCTAATTATCTCTACACCGGTGTTGAGGGAACCTGTGGAACGAGCCTAGACCATGGTGTTACTACTGTTGATTATGGCATCAGCGATGATGGGACTAAGTATTGGTTGGTTAAGAACTCATGGGGCGCAGAATGGGGAGAAGAAGGTTACATAAGAATGCAAAGAGATGTTGCTTCACAGGAAGGTCTCTGTGGTATTGCTATGGAAGCCTCTTACCCCACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0007034 GO:0008150 GO:0008509 GO:0009705 GO:0015075 GO:0015098 GO:0015103 GO:0015318 GO:0015689 GO:0015698 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0034486 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0090414 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_MOT1

Protein Analysis

289

Amino Acids

32.44

Weight (kDa)

5.69

Isoelectric Point (pI)

25.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	1.3e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	124 - 227	5.7e-15	Papain family cysteine protease
Peptidase_C1	PF00112	225 - 288	6.3e-19	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80310
prunus_persica	Prupe.3G077200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0137081
rosa_laevigata	RLG00000019606 RLG00000023044 RLG00000027400 RLG00000030801
rosa_multiflora	Rmu_sc0001374.1_g000007
rosa_roxburghii	Rroxscaffold_6G00407600
rosa_rugosa	Rorug02G0337900
rosa_samantha	Rh2AG387000 Rh2BG393800 Rh2CG374300 Rh2DG409900 Rh5DG512600 Rh6BG303900
rosa_wichuraiana	Rw2G031670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	206, 287
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	2 cut(s)	55, 306
AflIII	ACRYGT	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	659
AgsI	TTSAA	4 cut(s)	154, 184, 193, 313
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	293, 325
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	401, 541
AluI	AGCT	2 cut(s)	401, 541
Alw26I	GTCTC	2 cut(s)	382, 833
AlwI	GGATC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	59, 481
ApoI	RAATTY	2 cut(s)	206, 287
AsiGI	ACCGGT	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	770
AsuHPI	GGTGA	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	71, 493
BccI	CCATC	2 cut(s)	124, 725
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	382, 833
BfaI	CTAG	3 cut(s)	363, 542, 689
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	60, 482
BlsI	GCNGC	2 cut(s)	61, 483
Bme1390I	CCNGG	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	4 cut(s)	217, 394, 589, 729
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	6 cut(s)	476, 486, 571, 625, 639, 694
BsaWI	WCCGGW	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 306
Bse118I	RCCGGY	2 cut(s)	370, 659
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	6 cut(s)	476, 486, 571, 625, 639, 694
BseGI	GGATG	2 cut(s)	135, 601
BseLI	CCNNNNNNNGG	2 cut(s)	55, 306
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	71, 493
BshTI	ACCGGT	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	371, 660
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	2 cut(s)	55, 306
BsmAI	GTCTC	2 cut(s)	382, 833
BsmFI	GGGAC	1 cut(s)	748
BsmI	GAATGC	1 cut(s)	804
Bso31I	GGTCTC	1 cut(s)	833
Bsp1407I	TGTACA	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	45
Bsp19I	CCATGG	2 cut(s)	625, 694
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	673
BspPI	GGATC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	131
BsrFI	RCCGGY	2 cut(s)	370, 659
BsrGI	TGTACA	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	2 cut(s)	370, 659
BssECI	CCNNGG	6 cut(s)	476, 486, 571, 625, 639, 694
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	4 cut(s)	486, 571, 625, 694
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	551, 709
BstAUI	TGTACA	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	136, 372
BstDEI	CTNAG	4 cut(s)	471, 531, 632, 738
BstDSI	CCRYGG	3 cut(s)	476, 625, 694
BstF5I	GGATG	2 cut(s)	135, 601
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	382, 833
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 472, 481, 848
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	71, 493
BsuI	GTATCC	1 cut(s)	41
BtgI	CCRYGG	3 cut(s)	476, 625, 694
BtgZI	GCGATG	1 cut(s)	741
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	135, 601
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	1 cut(s)	861
Cac8I	GCNNGC	2 cut(s)	136, 372
CfoI	GCGC	1 cut(s)	770
Cfr10I	RCCGGY	2 cut(s)	370, 659
Csp6I	GTAC	1 cut(s)	449
CspAI	ACCGGT	1 cut(s)	659
CviAII	CATG	5 cut(s)	320, 626, 695, 762, 867
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	4 cut(s)	471, 531, 632, 738
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
Eco130I	CCWWGG	4 cut(s)	486, 571, 625, 694
Eco31I	GGTCTC	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	4 cut(s)	486, 571, 625, 694
ErhI	CCWWGG	4 cut(s)	486, 571, 625, 694
FaeI	CATG	5 cut(s)	323, 629, 698, 765, 870
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	5 cut(s)	319, 625, 694, 761, 866
Fnu4HI	GCNGC	2 cut(s)	60, 482
FokI	GGATG	2 cut(s)	142, 608
Fsp4HI	GCNGC	2 cut(s)	60, 482
FspBI	CTAG	3 cut(s)	363, 542, 689
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	2 cut(s)	60, 482
HapII	CCGG	2 cut(s)	371, 660
HhaI	GCGC	1 cut(s)	770
Hin1II	CATG	5 cut(s)	323, 629, 698, 765, 870
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	3 cut(s)	180, 215, 259
HpaII	CCGG	2 cut(s)	371, 660
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	3 cut(s)	9, 449, 547
Hpy8I	GTNNAC	3 cut(s)	9, 449, 547
HpyAV	CCTTC	3 cut(s)	163, 779, 818
HpyCH4III	ACNGT	2 cut(s)	551, 709
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	7 cut(s)	24, 113, 230, 269, 436, 802, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 472, 481, 848
HpyF3I	CTNAG	4 cut(s)	471, 531, 632, 738
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	5 cut(s)	323, 629, 698, 765, 870
HspAI	GCGC	1 cut(s)	768
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	2 cut(s)	71, 493
LweI	GCATC	4 cut(s)	217, 394, 589, 729
MaeI	CTAG	3 cut(s)	363, 542, 689
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	700, 788
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	3 cut(s)	210, 296, 794
MfeI	CAATTG	1 cut(s)	507
MluCI	AATT	7 cut(s)	206, 248, 263, 287, 507, 515, 646
MnlI	CCTC	5 cut(s)	91, 307, 634, 661, 862
MroNI	GCCGGC	1 cut(s)	370
MseI	TTAA	3 cut(s)	162, 590, 753
MslI	CAYNNNNRTG	2 cut(s)	431, 797
MspI	CCGG	2 cut(s)	371, 660
MspR9I	CCNGG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	804
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	21, 472, 481, 848
NaeI	GCCGGC	1 cut(s)	372
NcoI	CCATGG	2 cut(s)	625, 694
NdeII	GATC	1 cut(s)	45
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	5 cut(s)	323, 629, 698, 765, 870
NlaIV	GGNNCC	1 cut(s)	673
OliI	CACNNNNGTG	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	2 cut(s)	142, 162
PctI	GAATGC	1 cut(s)	804
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	180, 215, 259
PinAI	ACCGGT	1 cut(s)	659
PkrI	GCNGC	2 cut(s)	61, 483
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	673
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	431, 797
SaqAI	TTAA	3 cut(s)	162, 590, 753
SatI	GCNGC	2 cut(s)	60, 482
Sau3AI	GATC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	9 cut(s)	83, 148, 276, 353, 403, 543, 677, 790, 829
SfaNI	GCATC	4 cut(s)	217, 394, 589, 729
SgrAI	CRCCGGYG	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	431, 797
Sse9I	AATT	7 cut(s)	206, 248, 263, 287, 507, 515, 646
SspMI	CTAG	3 cut(s)	363, 542, 689
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	4 cut(s)	486, 571, 625, 694
TaaI	ACNGT	2 cut(s)	551, 709
TaiI	ACGT	1 cut(s)	148
TasI	AATT	7 cut(s)	206, 248, 263, 287, 507, 515, 646
TatI	WGTACW	1 cut(s)	448
TfiI	GAWTC	3 cut(s)	180, 215, 259
Tru1I	TTAA	3 cut(s)	162, 590, 753
Tru9I	TTAA	3 cut(s)	162, 590, 753
TscAI	CASTG	1 cut(s)	868
TseI	GCWGC	2 cut(s)	59, 481
TspDTI	ATGAA	4 cut(s)	297, 369, 601, 633
TspRI	CASTG	1 cut(s)	868
XapI	RAATTY	2 cut(s)	206, 287
XspI	CTAG	3 cut(s)	363, 542, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.