RLG00000031965

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019497
Physical Location & Seq
Reverse (-)
9865834 .. 9866253
420 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031965

Sequence Viewer

Length: 420 bp
ATGTATTTGAGGAAAAAGGGGCACCACATATTGAAGGAAGGCAAGGGTTTCCAAGCATTACTTGCAGCAGAAAAGAGGAGGATGATCTATCTTCATCCCATCACTCCAAGGCCAAGTGAGGAAGAAAAGAAGAAGTCAGAAAGTGTAGAAAACAGGAAGACAGAAAAAGAAGAAAAGAAAAGGAGTTTTCTGAAGTGGCTGATTGATCCAGGAGAGTTTGCTACCTGGAGTAGGTCTCAAGCTGGAGACCAAGGCATCGCAAGGGAAGTGAAGGAAATTTGCTACCTTCAGTTCCAGTGCGATGCCCAGTCTCCAGCTTCACCAATCACATTCTCATCAGCAAAACCATTAGTAGCATCCTCAAGTATCTCTGAGAGCGTACCAATGTCCCCTTCCCTCCGGCACAGTGATCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.85

Weight (kDa)

9.39

Isoelectric Point (pI)

78.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019497)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031965
rosa_multiflora Rmu_sc0000252.1_g000015
rosa_roxburghii Rroxscaffold_1G00063700 Rroxscaffold_1G00063710 Rroxscaffold_4G00327280
rosa_rugosa Rorug04G0399700 Rorug05G0005000
rosa_samantha Rh5CG025000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 21
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 2 cut(s) 212, 272
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 2 cut(s) 208, 224
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 2 cut(s) 242, 317
AluI AGCT 2 cut(s) 242, 317
Alw26I GTCTC 3 cut(s) 240, 240, 315
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 210, 226
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 3 cut(s) 240, 240, 315
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 210, 226
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 210, 226
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 264, 292, 365
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 3 cut(s) 247, 264, 297
BpuEI CTTGAG 2 cut(s) 222, 346
BsaI GGTCTC 2 cut(s) 240, 240
BsaJI CCNNGG 2 cut(s) 107, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 295, 307
BseBI CCWGG 2 cut(s) 210, 226
BseDI CCNNGG 2 cut(s) 107, 250
BseGI GGATG 3 cut(s) 87, 94, 356
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 295, 307
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 400
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 3 cut(s) 240, 240, 315
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 112
Bso31I GGTCTC 2 cut(s) 240, 240
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 84, 205, 409
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 2 cut(s) 240, 240
BsrI ACTGG 2 cut(s) 295, 307
BssECI CCNNGG 2 cut(s) 107, 250
BssMI GATC 3 cut(s) 84, 205, 409
BssT1I CCWWGG 2 cut(s) 107, 250
Bst2UI CCWGG 2 cut(s) 210, 226
Bst4CI ACNGT 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 87, 94, 356
BstKTI GATC 3 cut(s) 87, 208, 412
BstMAI GTCTC 3 cut(s) 240, 240, 315
BstMBI GATC 3 cut(s) 84, 205, 409
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 210, 226
BstSCI CCNGG 2 cut(s) 208, 224
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 164
BsuRI GGCC 1 cut(s) 112
BtgZI GCGATG 2 cut(s) 241, 315
BtsCI GGATG 3 cut(s) 87, 94, 356
BtsIMutI CAGTG 2 cut(s) 302, 412
Csp6I GTAC 1 cut(s) 380
CviJI RGCY 4 cut(s) 112, 199, 242, 317
CviKI_1 RGCY 4 cut(s) 112, 199, 242, 317
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 1 cut(s) 372
DpnI GATC 3 cut(s) 86, 207, 411
DpnII GATC 3 cut(s) 84, 205, 409
Eco130I CCWWGG 2 cut(s) 107, 250
Eco31I GGTCTC 2 cut(s) 240, 240
Eco57I CTGAAG 2 cut(s) 212, 272
EcoNI CCTNNNNNAGG 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 208, 224
EcoT14I CCWWGG 2 cut(s) 107, 250
ErhI CCWWGG 2 cut(s) 107, 250
FaiI YATR 1 cut(s) 29
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 373
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 81, 94, 343
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 3 cut(s) 247, 264, 297
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 400
HpaII CCGG 1 cut(s) 400
HphI GGTGA 1 cut(s) 312
Hpy188I TCNGA 3 cut(s) 139, 192, 373
HpyAV CCTTC 5 cut(s) 28, 32, 265, 296, 402
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 84, 205, 409
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 3 cut(s) 264, 292, 365
MalI GATC 3 cut(s) 86, 207, 411
MboI GATC 3 cut(s) 84, 205, 409
MboII GAAGA 5 cut(s) 83, 134, 142, 169, 182
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 276, 413
MnlI CCTC 6 cut(s) 3, 69, 72, 112, 370, 407
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 2 cut(s) 210, 226
MvaI CCWGG 2 cut(s) 210, 226
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 84, 205, 409
NlaIV GGNNCC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 208, 224
PspGI CCWGG 2 cut(s) 208, 224
PspN4I GGNNCC 1 cut(s) 23
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 84, 205, 409
ScrFI CCNGG 2 cut(s) 210, 226
SduI GDGCHC 1 cut(s) 24
SetI ASST 5 cut(s) 227, 236, 244, 288, 319
SfaNI GCATC 3 cut(s) 264, 292, 365
SmlI CTYRAG 2 cut(s) 237, 361
SmoI CTYRAG 2 cut(s) 237, 361
Sse9I AATT 2 cut(s) 276, 413
StyD4I CCNGG 2 cut(s) 208, 224
StyI CCWWGG 2 cut(s) 107, 250
TaaI ACNGT 1 cut(s) 407
TasI AATT 2 cut(s) 276, 413
TscAI CASTG 2 cut(s) 302, 412
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 2 cut(s) 302, 412
XagI CCTNNNNNAGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.