Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019497

Physical Location & Seq

Genomic Coordinates Reverse (-)

1570126 .. 1570464

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG025000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCCATTTGGTTCAAGTTATAAACAAGAAAGGTCTTGCCATGGACAGGTTTTGCAGCAATTGAAAAAGAAAGCTTCGAACAGGGCAAGACTTACTGAAGAGGACGTGCTGCGTGCGATTGAAGAAAGACAACAGCAAGACAAAAAAAAAAATATGCAAGGAGTGATCAGATCAGAGAAGAAATGGGGAGAAAGGGGATTGGATGTGGCCAAGGGGAGTATCTGGAGACCTTGTGTCCCAAAAGAACAAGAACAGAAAACACCGCCAAACGAGGAAGAACAGAAGGCATCACCCGTTGAACTTATTTTTGAGCTGTCACTGGTTGTAGTCAGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

112

Amino Acids

12.95

Weight (kDa)

9.36

Isoelectric Point (pI)

79.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019497)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000031965
rosa_multiflora	Rmu_sc0000252.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063700 Rroxscaffold_1G00063710 Rroxscaffold_4G00327280
rosa_rugosa	Rorug04G0399700 Rorug05G0005000
rosa_samantha	Rh5CG025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AciI	CCGC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	4 cut(s)	15, 64, 122, 299
AhdI	GACNNNNNGTC	1 cut(s)	233
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	2 cut(s)	74, 313
AluI	AGCT	2 cut(s)	74, 313
Alw26I	GTCTC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	55, 109
AsuHPI	GGTGA	1 cut(s)	282
AsuII	TTCGAA	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	67, 96
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	56, 110
BlsI	GCNGC	2 cut(s)	57, 111
BmeRI	GACNNNNNGTC	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	40, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	40, 210
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	67, 96
BshFI	GGCC	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	165, 170
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	40, 210
BssMI	GATC	2 cut(s)	165, 170
BssT1I	CCWWGG	2 cut(s)	40, 210
Bst6I	CTCTTC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	168, 173
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	165, 170
BstV1I	GCAGC	2 cut(s)	67, 96
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	336
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	3 cut(s)	74, 209, 313
CviKI_1	RGCY	3 cut(s)	74, 209, 313
DpnI	GATC	2 cut(s)	167, 172
DpnII	GATC	2 cut(s)	165, 170
DriI	GACNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	93
Eam1105I	GACNNNNNGTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	40, 210
Eco31I	GGTCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	117
EcoT14I	CCWWGG	2 cut(s)	40, 210
ErhI	CCWWGG	2 cut(s)	40, 210
FaeI	CATG	1 cut(s)	44
FaiI	YATR	3 cut(s)	21, 42, 155
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	56, 110
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	56, 110
GluI	GCNGC	2 cut(s)	56, 110
GsuI	CTGGAG	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	72
HphI	GGTGA	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	170, 175
Hpy188III	TCNNGA	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	55, 157
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	165, 170
LpnPI	CCDG	4 cut(s)	32, 67, 208, 305
Lsp1109I	GCAGC	2 cut(s)	67, 96
LweI	GCATC	1 cut(s)	296
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	315
MalI	GATC	2 cut(s)	167, 172
MboI	GATC	2 cut(s)	165, 170
MboII	GAAGA	4 cut(s)	110, 134, 190, 287
MfeI	CAATTG	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	209
MnlI	CCTC	2 cut(s)	94, 265
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MunI	CAATTG	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	2 cut(s)	165, 170
NlaIII	CATG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	57, 111
PsiI	TTATAA	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	336
SatI	GCNGC	2 cut(s)	56, 110
Sau3AI	GATC	2 cut(s)	165, 170
SetI	ASST	6 cut(s)	35, 51, 76, 108, 232, 315
SfaNI	GCATC	1 cut(s)	296
SfuI	TTCGAA	1 cut(s)	77
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	263
StyI	CCWWGG	2 cut(s)	40, 210
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	59
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	315
TseI	GCWGC	2 cut(s)	55, 109
Tsp45I	GTSAC	1 cut(s)	315
TspRI	CASTG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.