Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0019497

Physical Location & Seq

Genomic Coordinates Forward (+)

56512472 .. 56513012

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0399700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAAGGTTGTGATCGTCTGTTCATCAAGGAGGAGGAAGCCCGCAAGTCTGCTGCAGCTGTGGATGCGATGGCGGGGCTGACTCTCTTCAATTCTGTTGGGACTTCTAGGGCTCGGACTGGTATGGTGCAAAGAGATACGGATGTTAGGGCTGGGTTCTTGTCTCCGGAGGTGGCTGAACGTGCTGCACAGCATCGTGATCAAGCAGCTTTCTTCTCGGAACACCTCAATTCCGGACTCAAGGCTGCATCATGCAGACAAGGAGGTTTTCAGTTGCCAGCATTTGAGACTACAAAGACACAGGAAGCTTCTGTTGTTATCAGTGGCCACAAGCGTGGTGCTGATCTTTCTCTTGTGCGGCCTGGGAAGAAGTTACTAGCCCTACCTTCTCCTGCTATGGATGGGATTGGGAATCTGTCCCTAGCTCTACCAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

146

Amino Acids

15.47

Weight (kDa)

7.83

Isoelectric Point (pI)

35.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019497)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000031965
rosa_multiflora	Rmu_sc0000252.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063700 Rroxscaffold_1G00063710 Rroxscaffold_4G00327280
rosa_rugosa	Rorug04G0399700 Rorug05G0005000
rosa_samantha	Rh5CG025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	166, 233
AciI	CCGC	3 cut(s)	43, 74, 358
AcoI	YGGCCR	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	361
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	59, 209, 308, 425
AluI	AGCT	4 cut(s)	59, 209, 308, 425
Alw26I	GTCTC	2 cut(s)	168, 281
Aor13HI	TCCGGA	2 cut(s)	166, 233
AoxI	GGCC	2 cut(s)	325, 359
ApeKI	GCWGC	5 cut(s)	53, 56, 185, 206, 245
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BalI	TGGCCA	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	115
BbvI	GCAGC	5 cut(s)	40, 68, 172, 218, 232
BccI	CCATC	2 cut(s)	64, 395
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	168, 281
BfaI	CTAG	3 cut(s)	108, 377, 422
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	6 cut(s)	54, 57, 186, 207, 246, 359
BlsI	GCNGC	6 cut(s)	55, 58, 187, 208, 247, 360
Bme1390I	CCNGG	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	3 cut(s)	55, 202, 257
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	2 cut(s)	166, 233
Bse1I	ACTGG	1 cut(s)	124
BseAI	TCCGGA	2 cut(s)	166, 233
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	3 cut(s)	70, 148, 406
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	5 cut(s)	40, 68, 172, 218, 232
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	327, 361
BsiSI	CCGG	2 cut(s)	167, 234
BslFI	GGGAC	2 cut(s)	115, 403
BsmAI	GTCTC	2 cut(s)	168, 281
BsmFI	GGGAC	2 cut(s)	115, 403
BsnI	GGCC	2 cut(s)	327, 361
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp13I	TCCGGA	2 cut(s)	166, 233
Bsp143I	GATC	3 cut(s)	13, 199, 343
BspACI	CCGC	3 cut(s)	43, 74, 358
BspANI	GGCC	2 cut(s)	327, 361
BspEI	TCCGGA	2 cut(s)	166, 233
BspMAI	CTGCAG	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	3 cut(s)	13, 199, 343
Bst2UI	CCWGG	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	43, 279
BstF5I	GGATG	3 cut(s)	70, 148, 406
BstKTI	GATC	3 cut(s)	16, 202, 346
BstMAI	GTCTC	2 cut(s)	168, 281
BstMBI	GATC	3 cut(s)	13, 199, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 182
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	40, 68, 172, 218, 232
BstXI	CCANNNNNNTGG	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	327, 361
BtgZI	GCGATG	1 cut(s)	83
BtsCI	GGATG	3 cut(s)	70, 148, 406
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	43, 279
CviAII	CATG	1 cut(s)	252
DpnI	GATC	3 cut(s)	15, 201, 345
DpnII	GATC	3 cut(s)	13, 199, 343
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	115
FaeI	CATG	1 cut(s)	255
FaiI	YATR	3 cut(s)	125, 253, 398
FaqI	GGGAC	2 cut(s)	115, 403
FatI	CATG	1 cut(s)	251
FauI	CCCGC	2 cut(s)	50, 67
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	6 cut(s)	54, 57, 186, 207, 246, 359
FokI	GGATG	3 cut(s)	77, 155, 413
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	6 cut(s)	54, 57, 186, 207, 246, 359
FspBI	CTAG	3 cut(s)	108, 377, 422
GluI	GCNGC	6 cut(s)	54, 57, 186, 207, 246, 359
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	327, 361
HapII	CCGG	2 cut(s)	167, 234
Hin1II	CATG	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	3 cut(s)	82, 237, 412
HpaII	CCGG	2 cut(s)	167, 234
Hpy188I	TCNGA	2 cut(s)	117, 220
Hpy188III	TCNNGA	3 cut(s)	167, 197, 234
HpyAV	CCTTC	2 cut(s)	396, 428
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	56, 130, 188, 248, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 182
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	255
Kpn2I	TCCGGA	2 cut(s)	166, 233
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	13, 199, 343
LpnPI	CCDG	9 cut(s)	105, 138, 180, 247, 287, 291, 348, 375, 405
Lsp1109I	GCAGC	5 cut(s)	40, 68, 172, 218, 232
LweI	GCATC	3 cut(s)	55, 202, 257
MaeI	CTAG	3 cut(s)	108, 377, 422
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	3 cut(s)	15, 201, 345
MboI	GATC	3 cut(s)	13, 199, 343
MboII	GAAGA	3 cut(s)	79, 205, 379
MhlI	GDGCHC	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	2 cut(s)	91, 229
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	2 cut(s)	76, 231
MnlI	CCTC	5 cut(s)	25, 28, 163, 236, 257
Mox20I	TGGCCA	1 cut(s)	327
MroI	TCCGGA	2 cut(s)	166, 233
MscI	TGGCCA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	2 cut(s)	167, 234
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	65, 182
NdeII	GATC	3 cut(s)	13, 199, 343
NlaIII	CATG	1 cut(s)	255
OliI	CACNNNNGTG	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	412
PkrI	GCNGC	6 cut(s)	55, 58, 187, 208, 247, 360
PleI	GAGTC	2 cut(s)	76, 231
PpsI	GAGTC	2 cut(s)	76, 231
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	333
SatI	GCNGC	6 cut(s)	54, 57, 186, 207, 246, 359
Sau3AI	GATC	3 cut(s)	13, 199, 343
SchI	GAGTC	2 cut(s)	76, 231
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	115
SfaNI	GCATC	3 cut(s)	55, 202, 257
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	91, 229
SsiI	CCGC	3 cut(s)	43, 74, 358
SspMI	CTAG	3 cut(s)	108, 377, 422
StyD4I	CCNGG	1 cut(s)	361
TaiI	ACGT	1 cut(s)	184
TasI	AATT	2 cut(s)	91, 229
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	412
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	5 cut(s)	53, 56, 185, 206, 245
TspDTI	ATGAA	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	328
XspI	CTAG	3 cut(s)	108, 377, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.