Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019497

Physical Location & Seq

Genomic Coordinates Forward (+)

85501035 .. 85502285

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAAGCTGTTAAAATAGTTCTATCCAATTGGGGTTTGCTATCCTCCCATACATACTCCGAGGTAGTGCAGGAATTGAAGGCTAAGGCGTTGGAGAGAGCTGAACTTTCTGAAGATGATGTGCTGCATACGATTGCAGACAGGACATTAGCAATGAAAAAGAAGATTATGCAAAAAGTGATCAGATCAGAGTTGAAATGGAGAAAAAGGCTGGGTATTCAAATCATGGATGTAGGCAATGAGAATATCTGGAGACCTCAACAAGTGAATTCAAGGAACCCAACTGATTACTTGACAACTACATTTCCATTTCTTTACCTCTGTGGTGTTGATTTCAAAACAAGAGAGACCAATGTGTTAATCATAAAACTAGAAGGAGGTAGAATGTATTCAAGGAAAAAGGGGCACCACATATTGAAGGAAGGCAAGGGTTTCCAAGCATTACTTGCAGCAGAAAAGAGGAGGATGATCTTTCTTCATCCCATCACTCCAAGGCCAAGTGAGGAAGAAAAGAAGAAGTCAGAAAGTGTAGAAAACAGGAAGACAGAAAAAGAAGAAAAGAAAAGGAGTTTTCTGAAGTGGCTGATTGATCCAGGAGAGTTTGCTACCTGGAGTAGGTCTCAAGCTGGAGACCAAGGCATCGCAAGGGAAGTGAAGGAAATTTGCTATCTTCAGTTCCCGTGCGATGCTCAGTCTCCAGCTTCACCAATCACATTCTCATCAGCAAAACCATTAGTAGCATCCTCAAGTATCTCTGAGAGCGTACCAATGTCCCCTCCCCTCCGGCACCGTGATCATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004817 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006423 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

DALR_2 tRNA-synt_1e

Protein Analysis

267

Amino Acids

30.67

Weight (kDa)

9.52

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019497)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000031965
rosa_multiflora	Rmu_sc0000252.1_g000015
rosa_roxburghii	Rroxscaffold_1G00063700 Rroxscaffold_1G00063710 Rroxscaffold_4G00327280
rosa_rugosa	Rorug04G0399700 Rorug05G0005000
rosa_samantha	Rh5CG025000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	405, 786
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	268, 660
AcuI	CTGAAG	3 cut(s)	132, 596, 656
AfaI	GTAC	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	615
AgsI	TTSAA	7 cut(s)	79, 196, 221, 273, 337, 393, 418
AjnI	CCWGG	2 cut(s)	592, 608
AluBI	AGCT	4 cut(s)	8, 101, 626, 701
AluI	AGCT	4 cut(s)	8, 101, 626, 701
Alw26I	GTCTC	5 cut(s)	247, 341, 624, 624, 699
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	124, 449
ApoI	RAATTY	2 cut(s)	268, 660
Asp700I	GAANNNNTTC	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	696
BaeGI	GKGCMC	1 cut(s)	408
BanI	GGYRCC	2 cut(s)	405, 786
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	111, 461
BccI	CCATC	1 cut(s)	491
BciT130I	CCWGG	2 cut(s)	594, 610
BclI	TGATCA	2 cut(s)	180, 793
BcoDI	GTCTC	5 cut(s)	247, 341, 624, 624, 699
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	2 cut(s)	125, 450
BlsI	GCNGC	2 cut(s)	126, 451
Bme1390I	CCNGG	2 cut(s)	594, 610
BmiI	GGNNCC	3 cut(s)	278, 407, 788
BmrFI	CCNGG	2 cut(s)	594, 610
BmsI	GCATC	3 cut(s)	648, 676, 749
BpiI	GAAGAC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	4 cut(s)	271, 631, 648, 681
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	2 cut(s)	606, 730
BsaI	GGTCTC	4 cut(s)	247, 341, 624, 624
BsaJI	CCNNGG	3 cut(s)	60, 491, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse3DI	GCAATG	2 cut(s)	159, 244
BseBI	CCWGG	2 cut(s)	594, 610
BseDI	CCNNGG	3 cut(s)	60, 491, 634
BseGI	GGATG	4 cut(s)	235, 471, 478, 740
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseMI	GCAATG	2 cut(s)	159, 244
BseMII	CTCAG	2 cut(s)	704, 747
BseRI	GAGGAG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	111, 461
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	496
BshNI	GGYRCC	2 cut(s)	405, 786
BsiSI	CCGG	1 cut(s)	784
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmAI	GTCTC	5 cut(s)	247, 341, 624, 624, 699
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	496
Bso31I	GGTCTC	4 cut(s)	247, 341, 624, 624
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	180, 185, 468, 589, 793
BspANI	GGCC	1 cut(s)	496
BspCNI	CTCAG	2 cut(s)	703, 748
BspLI	GGNNCC	3 cut(s)	278, 407, 788
BspPI	GGATC	1 cut(s)	584
BspT107I	GGYRCC	2 cut(s)	405, 786
BspTNI	GGTCTC	4 cut(s)	247, 341, 624, 624
BsrDI	GCAATG	2 cut(s)	159, 244
BssECI	CCNNGG	3 cut(s)	60, 491, 634
BssMI	GATC	5 cut(s)	180, 185, 468, 589, 793
BssT1I	CCWWGG	2 cut(s)	491, 634
Bst2UI	CCWGG	2 cut(s)	594, 610
Bst4CI	ACNGT	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDEI	CTNAG	3 cut(s)	84, 690, 756
BstENI	CCTNNNNNAGG	1 cut(s)	613
BstF5I	GGATG	4 cut(s)	235, 471, 478, 740
BstKTI	GATC	5 cut(s)	183, 188, 471, 592, 796
BstMAI	GTCTC	5 cut(s)	247, 341, 624, 624, 699
BstMBI	GATC	5 cut(s)	180, 185, 468, 589, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	594, 610
BstSCI	CCNGG	2 cut(s)	592, 608
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	2 cut(s)	111, 461
BstV2I	GAAGAC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	496
BtgZI	GCGATG	2 cut(s)	625, 699
BtsCI	GGATG	4 cut(s)	235, 471, 478, 740
Csp6I	GTAC	1 cut(s)	764
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	8 cut(s)	8, 83, 101, 211, 496, 583, 626, 701
CviKI_1	RGCY	8 cut(s)	8, 83, 101, 211, 496, 583, 626, 701
CviQI	GTAC	1 cut(s)	764
DdeI	CTNAG	3 cut(s)	84, 690, 756
DpnI	GATC	5 cut(s)	182, 187, 470, 591, 795
DpnII	GATC	5 cut(s)	180, 185, 468, 589, 793
Eco130I	CCWWGG	2 cut(s)	491, 634
Eco31I	GGTCTC	4 cut(s)	247, 341, 624, 624
Eco57I	CTGAAG	3 cut(s)	132, 596, 656
EcoNI	CCTNNNNNAGG	1 cut(s)	613
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	2 cut(s)	592, 608
EcoT14I	CCWWGG	2 cut(s)	491, 634
ErhI	CCWWGG	2 cut(s)	491, 634
FaeI	CATG	1 cut(s)	229
FaiI	YATR	7 cut(s)	51, 55, 129, 170, 227, 365, 413
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	1 cut(s)	225
FbaI	TGATCA	2 cut(s)	180, 793
Fnu4HI	GCNGC	2 cut(s)	125, 450
FokI	GGATG	4 cut(s)	242, 465, 478, 727
Fsp4HI	GCNGC	2 cut(s)	125, 450
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	2 cut(s)	125, 450
GsaI	CCCAGC	1 cut(s)	215
GsuI	CTGGAG	4 cut(s)	271, 631, 648, 681
HaeIII	GGCC	1 cut(s)	496
HapII	CCGG	1 cut(s)	784
Hin1II	CATG	1 cut(s)	229
HpaII	CCGG	1 cut(s)	784
HphI	GGTGA	1 cut(s)	696
Hpy188I	TCNGA	7 cut(s)	61, 112, 185, 190, 523, 576, 757
Hpy188III	TCNNGA	1 cut(s)	250
HpyAV	CCTTC	5 cut(s)	73, 368, 412, 416, 649
HpyCH4III	ACNGT	1 cut(s)	791
HpyCH4V	TGCA	5 cut(s)	70, 127, 137, 172, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	84, 690, 756
Hsp92II	CATG	1 cut(s)	229
Ksp22I	TGATCA	2 cut(s)	180, 793
Kzo9I	GATC	5 cut(s)	180, 185, 468, 589, 793
Lsp1109I	GCAGC	2 cut(s)	111, 461
LweI	GCATC	3 cut(s)	648, 676, 749
MaeI	CTAG	1 cut(s)	371
MalI	GATC	5 cut(s)	182, 187, 470, 591, 795
MboI	GATC	5 cut(s)	180, 185, 468, 589, 793
MboII	GAAGA	8 cut(s)	125, 175, 467, 518, 526, 553, 566, 662
MfeI	CAATTG	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	4 cut(s)	28, 74, 268, 660
MmeI	TCCRAC	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	388
MseI	TTAA	2 cut(s)	12, 359
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	2 cut(s)	594, 610
MunI	CAATTG	1 cut(s)	28
MvaI	CCWGG	2 cut(s)	594, 610
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	5 cut(s)	180, 185, 468, 589, 793
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	3 cut(s)	278, 407, 788
PdmI	GAANNNNTTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	126, 451
Psp6I	CCWGG	2 cut(s)	592, 608
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	2 cut(s)	592, 608
PspN4I	GGNNCC	3 cut(s)	278, 407, 788
RsaI	GTAC	1 cut(s)	765
RsaNI	GTAC	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	12, 359
SatI	GCNGC	2 cut(s)	125, 450
Sau3AI	GATC	5 cut(s)	180, 185, 468, 589, 793
ScrFI	CCNGG	2 cut(s)	594, 610
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	3 cut(s)	648, 676, 749
SmlI	CTYRAG	2 cut(s)	621, 745
SmoI	CTYRAG	2 cut(s)	621, 745
Sse9I	AATT	4 cut(s)	28, 74, 268, 660
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	592, 608
StyI	CCWWGG	2 cut(s)	491, 634
TaaI	ACNGT	1 cut(s)	791
TasI	AATT	4 cut(s)	28, 74, 268, 660
Tru1I	TTAA	2 cut(s)	12, 359
Tru9I	TTAA	2 cut(s)	12, 359
TseI	GCWGC	2 cut(s)	124, 449
TspDTI	ATGAA	2 cut(s)	170, 467
XagI	CCTNNNNNAGG	1 cut(s)	613
XapI	RAATTY	2 cut(s)	268, 660
XmnI	GAANNNNTTC	1 cut(s)	388
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.