RLG00000034077

Trigger factor-like protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
36415516 .. 36421153
5638 bp
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UTR
Exon/CDS
Intron
RLM00000034077

Sequence Viewer

Length: 1587 bp
ATGGAGCTCTGCCTCACTGCCATCAATGGTGGCTCCACAGCGGTCCTCAACTCAAACCCATCACGCTCTTCACCCTCCCTTCTTCTCCCCAAAAACCCTTCTTCTTTCCAACTCTACACTTCTCGCAGACCCCCCTCTCTTTCCCGCCAATTCCACCCTCTCCAATTCGCAGTCTCGTCCTCTTCTTCCACAGCTACCACCTCCGAGATAGACCAACTTCCGGCAGACATCAGCGTCACAGAGACCCAACAACCCAATTCCAGAGTGAAGTTGAGCATACAAGTGCCGCCGGAGGTCTGCGATGACTGTTACAAAAAGGTTATAGTCGAGTTCATGAAGCAAGCAAAGGTTCCGGGGTTTCGGCCTGGAAAGAGGGTGCCGGAGAGTATTCTTGTGAGTTATGTAGGGAAGAAAAGTGTAGACAAGGCTACCATTGAGTCTATTTTGAGGAGGACCCTTCCACATGCCATGTCTTCAATGACCGGCACAGCTTTAACAGACTCAGTCAGCATTCTGACCAAATTTTCTGAGCTAGAGCAGGCCTATTCTTCTGGCACCTCTCTCAGATATGATGTGATTGTTGATGTAGCACCAGAAGTGAAATGGATTCCTGAGAACGGATACAAGAATTTGAAGGTCGCCGTTGAGATAGACAGTGACATAGATGCACAAAAGGTTTCTGAACAAGAATTAAGACGCCGTCACAAGTCCCTAGGGGCTTTAAGAATTGTAACTGACAGAGGACTACAGGTTGGCGATCTTGTCGTCCTTGATATATCTGCGACAACAAGAAATCAAGACGAATCAAATGTTCAAAATATTCCATCTGCAGAGAGTAAAGGTTATCATTTTGATACAGAAGATGGTGATAAACTAATTCCCGGTTTCCTTGATTCGATAATTGGAATTCAACGAGGTGAAACAAAGTCTTTTCCTCTTGTATTTCCTGAATCATGGGCACAGGAAAATCTCCGAGGAATTCATGCTCAATTCAATGTTGAATGCAAGGAGTTATTTTACAGAGATTTACCAGAATTGGATGACTCCCTTGCTCCTAAGCTTCTTCCTGGATGCACCACCCTGGAACAGGTCAAGGAATCACTCTTGCAAAAATGCCAGGAAGTAGAGCAAACAGCTAGAGAGCAAGCAGCAGATAATGCCATTCTAGATCAGCTTTGCAAGATGGTAGAGGTTGATATTCCTCAATCCTTGTTTGAGGAACAAGGTAGGCAGCTTTATGGAGCCAAACTTTTAGAGATACAGGCAAATGTAAAATTAAATGAAGAGCAACTGGCTACACTGTCAAGTAAGAAAGCAGTGGATGAGTACCTTCTACACCAGAAGGAGAATATCATGAATATGATAAAACAGGGTATGGCTGTCGGAGACATATTTAAACGGGAAAAGTTGCAGTTTTCAACAGACGATCTTGTGAAAGAGGTCGAAAATTCCATTGCTGAATTCAAACGTCAAAAACAGGATTATGATGAGGAACGTGTTAAGGGACAGGTCCAGGAAATTTTAGAGGGAGCAAAGGTGCTTGAATGGTTAAGAGAACATTCAGAGATTCAGTACATAACTAGATGA

Protein Analysis

529

Amino Acids

59.22

Weight (kDa)

5.21

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trigger_N PF05697 78 - 228 1.8e-20 Bacterial trigger factor protein (TF)
Trigger_C PF05698 360 - 517 4.3e-18 Bacterial trigger factor protein (TF) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB1I GGYRCC 2 cut(s) 376, 554
AccI GTMKAC 1 cut(s) 420
AciI CCGC 3 cut(s) 41, 145, 287
AcsI RAATTY 7 cut(s) 521, 628, 906, 978, 1447, 1460, 1518
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 2 cut(s) 1328, 1574
AfiI CCNNNNNNNGG 3 cut(s) 220, 617, 1087
AflIII ACRYGT 1 cut(s) 1495
AgsI TTSAA 9 cut(s) 477, 634, 815, 911, 994, 1001, 1419, 1465, 1544
AjnI CCWGG 5 cut(s) 364, 1066, 1080, 1116, 1512
AluBI AGCT 8 cut(s) 7, 194, 491, 532, 1060, 1136, 1174, 1234
AluI AGCT 8 cut(s) 7, 194, 491, 532, 1060, 1136, 1174, 1234
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 3 cut(s) 178, 236, 1380
AoxI GGCC 2 cut(s) 362, 540
ApeKI GCWGC 2 cut(s) 1148, 1231
ApoI RAATTY 7 cut(s) 521, 628, 906, 978, 1447, 1460, 1518
AspA2I CCTAGG 1 cut(s) 712
AspS9I GGNCC 3 cut(s) 43, 453, 1510
AsuC2I CCSGG 2 cut(s) 354, 882
AsuHPI GGTGA 3 cut(s) 63, 878, 929
AvaII GGWCC 3 cut(s) 43, 453, 1510
AvrII CCTAGG 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 961
BanI GGYRCC 2 cut(s) 376, 554
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 1160, 1243
BccI CCATC 5 cut(s) 29, 67, 832, 857, 1177
BceAI ACGGC 2 cut(s) 626, 684
BciT130I CCWGG 5 cut(s) 366, 1068, 1082, 1118, 1514
BciVI GTATCC 1 cut(s) 614
BcnI CCSGG 2 cut(s) 354, 882
BcoDI GTCTC 3 cut(s) 178, 236, 1380
BfaI CTAG 5 cut(s) 533, 713, 1137, 1166, 1581
BfmI CTRYAG 2 cut(s) 746, 828
BfuI GTATCC 1 cut(s) 614
BisI GCNGC 3 cut(s) 287, 1149, 1232
BlnI CCTAGG 1 cut(s) 712
BlsI GCNGC 3 cut(s) 288, 1150, 1233
Bme1390I CCNGG 7 cut(s) 354, 366, 882, 1068, 1082, 1118, 1514
Bme18I GGWCC 3 cut(s) 43, 453, 1510
BmgT120I GGNCC 3 cut(s) 43, 453, 1510
BmiI GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
BmrFI CCNGG 7 cut(s) 354, 366, 882, 1068, 1082, 1118, 1514
BmsI GCATC 2 cut(s) 655, 1061
BpiI GAAGAC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 1056
BpuMI CCSGG 2 cut(s) 354, 882
BsaHI GRCGYC 1 cut(s) 697
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 353, 712, 973, 1080
BsaXI ACNNNNNCTCC 2 cut(s) 1521, 1551
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 617, 1087
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 1 cut(s) 1296
Bse3DI GCAATG 1 cut(s) 1452
BseBI CCWGG 5 cut(s) 366, 1068, 1082, 1118, 1514
BseDI CCNNGG 4 cut(s) 353, 712, 973, 1080
BseGI GGATG 3 cut(s) 1045, 1076, 1327
BseLI CCNNNNNNNGG 3 cut(s) 220, 617, 1087
BseMI GCAATG 1 cut(s) 1452
BseMII CTCAG 4 cut(s) 516, 519, 577, 603
BseNI ACTGG 1 cut(s) 1296
BseRI GAGGAG 1 cut(s) 463
BseSI GKGCMC 1 cut(s) 961
BseXI GCAGC 2 cut(s) 1160, 1243
BshFI GGCC 2 cut(s) 364, 542
BshNI GGYRCC 2 cut(s) 376, 554
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
BslFI GGGAC 2 cut(s) 694, 1518
BslI CCNNNNNNNGG 3 cut(s) 220, 617, 1087
BsmAI GTCTC 3 cut(s) 178, 236, 1380
BsmFI GGGAC 2 cut(s) 694, 1518
BsmI GAATGC 2 cut(s) 510, 1007
BsnI GGCC 2 cut(s) 364, 542
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 9, 961
Bsp143I GATC 3 cut(s) 757, 1168, 1426
BspACI CCGC 3 cut(s) 41, 145, 287
BspANI GGCC 2 cut(s) 364, 542
BspCNI CTCAG 4 cut(s) 515, 520, 576, 604
BspHI TCATGA 2 cut(s) 333, 1353
BspLI GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
BspMAI CTGCAG 1 cut(s) 832
BspQI GCTCTTC 2 cut(s) 73, 1278
BspT107I GGYRCC 2 cut(s) 376, 554
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 1452
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 1 cut(s) 1296
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 4 cut(s) 353, 712, 973, 1080
BssMI GATC 3 cut(s) 757, 1168, 1426
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 1 cut(s) 712
Bst2UI CCWGG 5 cut(s) 366, 1068, 1082, 1118, 1514
Bst4CI ACNGT 3 cut(s) 308, 656, 1302
Bst6I CTCTTC 3 cut(s) 73, 187, 1278
BstACI GRCGYC 1 cut(s) 697
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstC8I GCNNGC 3 cut(s) 342, 540, 1146
BstDEI CTNAG 5 cut(s) 502, 528, 563, 612, 1056
BstENI CCTNNNNNAGG 1 cut(s) 1085
BstF5I GGATG 3 cut(s) 1045, 1076, 1327
BstKTI GATC 3 cut(s) 760, 1171, 1429
BstMAI GTCTC 3 cut(s) 178, 236, 1380
BstMBI GATC 3 cut(s) 757, 1168, 1426
BstMWI GCNNNNNNNGC 1 cut(s) 1157
BstNI CCWGG 5 cut(s) 366, 1068, 1082, 1118, 1514
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 7 cut(s) 352, 364, 880, 1066, 1080, 1116, 1512
BstSFI CTRYAG 2 cut(s) 746, 828
BstSLI GKGCMC 1 cut(s) 961
BstV1I GCAGC 2 cut(s) 1160, 1243
BstV2I GAAGAC 1 cut(s) 465
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 364, 542
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 3 cut(s) 1045, 1076, 1327
BtsI GCAGTG 2 cut(s) 15, 1323
BtsIMutI CAGTG 4 cut(s) 15, 661, 1298, 1323
Cac8I GCNNGC 3 cut(s) 342, 540, 1146
CciI TCATGA 2 cut(s) 333, 1353
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 3 cut(s) 43, 453, 1510
CseI GACGC 2 cut(s) 223, 705
Csp6I GTAC 2 cut(s) 1327, 1573
CviAII CATG 6 cut(s) 334, 464, 469, 954, 983, 1354
CviQI GTAC 2 cut(s) 1327, 1573
DdeI CTNAG 5 cut(s) 502, 528, 563, 612, 1056
DpnI GATC 3 cut(s) 759, 1170, 1428
DpnII GATC 3 cut(s) 757, 1168, 1426
DraI TTTAAA 1 cut(s) 1396
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 3 cut(s) 73, 187, 1278
EarI CTCTTC 3 cut(s) 73, 187, 1278
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 712
Eco147I AGGCCT 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 3 cut(s) 43, 453, 1510
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 453
EcoRI GAATTC 3 cut(s) 906, 978, 1460
EcoRII CCWGG 5 cut(s) 364, 1066, 1080, 1116, 1512
EcoT14I CCWWGG 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 712
FaeI CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
FaqI GGGAC 2 cut(s) 694, 1518
FatI CATG 6 cut(s) 333, 463, 468, 953, 982, 1353
FauI CCCGC 1 cut(s) 152
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 3 cut(s) 287, 1149, 1232
FokI GGATG 3 cut(s) 1052, 1083, 1334
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 287, 1149, 1232
FspBI CTAG 5 cut(s) 533, 713, 1137, 1166, 1581
GluI GCNGC 3 cut(s) 287, 1149, 1232
HaeIII GGCC 2 cut(s) 364, 542
HapII CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
HgaI GACGC 2 cut(s) 223, 705
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
HindIII AAGCTT 1 cut(s) 1058
HinfI GANTC 9 cut(s) 437, 500, 607, 803, 893, 950, 1043, 1097, 1567
HpaII CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
HphI GGTGA 3 cut(s) 63, 878, 929
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 8 cut(s) 205, 516, 529, 566, 682, 974, 1385, 1564
Hpy188III TCNNGA 7 cut(s) 261, 334, 611, 797, 947, 1166, 1354
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 6 cut(s) 89, 108, 467, 628, 1336, 1340
HpyCH4III ACNGT 3 cut(s) 308, 656, 1302
HpyCH4IV ACGT 2 cut(s) 1468, 1495
HpyCH4V TGCA 7 cut(s) 668, 830, 1005, 1074, 1108, 1179, 1411
HpyF10VI GCNNNNNNNGC 1 cut(s) 1157
HpyF3I CTNAG 5 cut(s) 502, 528, 563, 612, 1056
HpySE526I ACGT 2 cut(s) 1468, 1495
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
Kzo9I GATC 3 cut(s) 757, 1168, 1426
LguI GCTCTTC 2 cut(s) 73, 1278
LmnI GCTCC 5 cut(s) 4, 38, 1057, 1241, 1529
Lsp1109I GCAGC 2 cut(s) 1160, 1243
LweI GCATC 2 cut(s) 655, 1061
MaeI CTAG 5 cut(s) 533, 713, 1137, 1166, 1581
MaeII ACGT 2 cut(s) 1468, 1495
MaeIII GTNAC 5 cut(s) 235, 308, 656, 701, 730
MalI GATC 3 cut(s) 759, 1170, 1428
MboI GATC 3 cut(s) 757, 1168, 1426
MhlI GDGCHC 2 cut(s) 9, 961
MlyI GAGTC 3 cut(s) 446, 494, 1037
MmeI TCCRAC 2 cut(s) 133, 1363
MseI TTAA 7 cut(s) 494, 692, 722, 1277, 1395, 1500, 1550
MslI CAYNNNNRTG 2 cut(s) 281, 1358
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 6 cut(s) 221, 290, 353, 380, 483, 882
MspR9I CCNGG 7 cut(s) 354, 366, 882, 1068, 1082, 1118, 1514
Mva1269I GAATGC 2 cut(s) 510, 1007
MvaI CCWGG 5 cut(s) 366, 1068, 1082, 1118, 1514
MwoI GCNNNNNNNGC 1 cut(s) 1157
NciI CCSGG 2 cut(s) 354, 882
NdeII GATC 3 cut(s) 757, 1168, 1426
NlaIII CATG 6 cut(s) 337, 467, 472, 957, 986, 1357
NlaIV GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
NmuCI GTSAC 3 cut(s) 235, 656, 701
NspI RCATGY 1 cut(s) 467
PagI TCATGA 2 cut(s) 333, 1353
PceI AGGCCT 1 cut(s) 542
PciSI GCTCTTC 2 cut(s) 73, 1278
PctI GAATGC 2 cut(s) 510, 1007
PfeI GAWTC 6 cut(s) 607, 803, 893, 950, 1097, 1567
PflFI GACNNNGTC 2 cut(s) 503, 699
PfoI TCCNGGA 2 cut(s) 1066, 1512
PkrI GCNGC 3 cut(s) 288, 1150, 1233
PleI GAGTC 3 cut(s) 445, 494, 1037
PpsI GAGTC 3 cut(s) 445, 494, 1037
PpuMI RGGWCCY 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 453
Psp6I CCWGG 5 cut(s) 364, 1066, 1080, 1116, 1512
PspGI CCWGG 5 cut(s) 364, 1066, 1080, 1116, 1512
PspN4I GGNNCC 6 cut(s) 34, 351, 378, 455, 556, 1243
PspPI GGNCC 3 cut(s) 43, 453, 1510
PspPPI RGGWCCY 1 cut(s) 453
PstI CTGCAG 1 cut(s) 832
PsyI GACNNNGTC 2 cut(s) 503, 699
RsaI GTAC 2 cut(s) 1328, 1574
RsaNI GTAC 2 cut(s) 1327, 1573
RseI CAYNNNNRTG 2 cut(s) 281, 1358
SacI GAGCTC 1 cut(s) 9
SapI GCTCTTC 2 cut(s) 73, 1278
SaqAI TTAA 7 cut(s) 494, 692, 722, 1277, 1395, 1500, 1550
SatI GCNGC 3 cut(s) 287, 1149, 1232
Sau3AI GATC 3 cut(s) 757, 1168, 1426
Sau96I GGNCC 3 cut(s) 43, 453, 1510
SchI GAGTC 3 cut(s) 446, 494, 1037
ScrFI CCNGG 7 cut(s) 354, 366, 882, 1068, 1082, 1118, 1514
SduI GDGCHC 2 cut(s) 9, 961
SfaNI GCATC 2 cut(s) 655, 1061
SfcI CTRYAG 2 cut(s) 746, 828
SinI GGWCC 3 cut(s) 43, 453, 1510
SmiMI CAYNNNNRTG 2 cut(s) 281, 1358
SseBI AGGCCT 1 cut(s) 542
SsiI CCGC 3 cut(s) 41, 145, 287
SspI AATATT 1 cut(s) 820
SspMI CTAG 5 cut(s) 533, 713, 1137, 1166, 1581
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 7 cut(s) 352, 364, 880, 1066, 1080, 1116, 1512
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 3 cut(s) 308, 656, 1302
TaiI ACGT 2 cut(s) 1471, 1498
TaqI TCGA 3 cut(s) 327, 896, 1443
TatI WGTACW 1 cut(s) 1572
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 6 cut(s) 607, 803, 893, 950, 1097, 1567
Tru1I TTAA 7 cut(s) 494, 692, 722, 1277, 1395, 1500, 1550
Tru9I TTAA 7 cut(s) 494, 692, 722, 1277, 1395, 1500, 1550
TscAI CASTG 4 cut(s) 22, 661, 1305, 1323
TseFI GTSAC 3 cut(s) 235, 656, 701
TseI GCWGC 2 cut(s) 1148, 1231
Tsp45I GTSAC 3 cut(s) 235, 656, 701
TspDTI ATGAA 5 cut(s) 322, 350, 971, 1296, 1370
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 4 cut(s) 22, 661, 1305, 1323
Tth111I GACNNNGTC 2 cut(s) 503, 699
VpaK11BI GGWCC 3 cut(s) 43, 453, 1510
XagI CCTNNNNNAGG 1 cut(s) 1085
XapI RAATTY 7 cut(s) 521, 628, 906, 978, 1447, 1460, 1518
XbaI TCTAGA 1 cut(s) 1165
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XmaJI CCTAGG 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 5 cut(s) 533, 713, 1137, 1166, 1581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.