Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021997.1

Orthogroup ID

OG0011134

Physical Location & Seq

Genomic Coordinates Reverse (-)

6772 .. 8961

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021997.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggagctctgcctcactgccatcaatggtggctccacagcggtcctcaactcaaacccatcacgctcctcaccctcccttcttctccccaaaaacccttcttctctccaactctacacttctcgcagacccccctcgctttcccgccaattccaccctctccaattcgcggcctcgtcctcttcttccaccgctaccacctccgagatagaccaacttccggccgacatcagcgtcacagagacccaacaacccaattccagagtgaagttgagcgtacaagtgccgcgggaggtctgcgatgactgttacaaaaaggttatagtcgagttcacgaagcaagcaaaggttccggggttccggcctggaaagagggtgccggagagtattcttgtgagttatgtggggaagaaaagtgtagacaaggctaccattgagtctattctgaggaggacccttccacatgccatgtcttcaatgaccggcacggctttgacagactcagtcagcattctgaccaaattttctgagctagagcaggcctattcttctggcacctctctcagatatgatgtgatggttgatgtagcaccagaagtgaaatggattcctgagaatggatacaagaatttgaaggtcgccgttgagatagacagtgacatagatgcacaaaaggtttctgaacaagaattaagacgccgtcacaagtccctaggggctttaagaattgtaactgacagaggactacaggttggcgatcttgttgtccttgatatatctgcaacaacaataagtcaagatgaatcaaatgttcaaaatattccatctgcagagagtaaaggtttgttaagattcttctgtttctccccttctgttttaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_C Trigger_N

Protein Analysis

294

Amino Acids

32.16

Weight (kDa)

8.6

Isoelectric Point (pI)

63.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55220
fragaria_vesca	FvH4_3g23540 FvH4_3g23540 FvH4_3g23540
malus_domestica	MD11G1209500.v1.1
prunus_persica	Prupe.4G223000_v2.0.a1
pyrus_communis	pycom11g18500
rosa_chinensis	RchiOBHm_Chr5g0041541
rosa_laevigata	RLG00000034077
rosa_multiflora	Rmu_sc0006112.1_g000004 Rmu_sc0014067.1_g000006 Rmu_sc0021997.1_g000001 Rmu_sc0029151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038980
rosa_rugosa	Rorug05G0193400
rosa_samantha	Rh5AG279000 Rh5BG283400 Rh5CG316300 Rh5DG293100
rosa_wichuraiana	Rw5G026280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccB1I	GGYRCC	2 cut(s)	376, 554
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	2 cut(s)	170, 289
AciI	CCGC	6 cut(s)	41, 145, 170, 192, 287, 289
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	521, 628
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	169, 220, 617
AgsI	TTSAA	3 cut(s)	477, 634, 815
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	7, 532
AluI	AGCT	2 cut(s)	7, 532
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	4 cut(s)	171, 222, 362, 540
ApoI	RAATTY	2 cut(s)	521, 628
AspA2I	CCTAGG	1 cut(s)	712
AspS9I	GGNCC	2 cut(s)	43, 453
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	43, 453
AvrII	CCTAGG	1 cut(s)	712
BanI	GGYRCC	2 cut(s)	376, 554
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	4 cut(s)	29, 67, 571, 832
BceAI	ACGGC	3 cut(s)	504, 626, 684
BciT130I	CCWGG	1 cut(s)	366
BciVI	GTATCC	1 cut(s)	614
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	533, 713
BfmI	CTRYAG	2 cut(s)	746, 828
BfuI	GTATCC	1 cut(s)	614
BisI	GCNGC	2 cut(s)	171, 287
BlnI	CCTAGG	1 cut(s)	712
BlsI	GCNGC	2 cut(s)	172, 288
Bme1390I	CCNGG	2 cut(s)	354, 366
Bme18I	GGWCC	2 cut(s)	43, 453
BmgT120I	GGNCC	2 cut(s)	43, 453
BmiI	GGNNCC	6 cut(s)	34, 351, 359, 378, 455, 556
BmrFI	CCNGG	2 cut(s)	354, 366
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	287, 353, 712
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 220, 617
Bse118I	RCCGGY	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	287, 353, 712
BseLI	CCNNNNNNNGG	3 cut(s)	169, 220, 617
BseMII	CTCAG	5 cut(s)	437, 516, 519, 577, 603
BseRI	GAGGAG	2 cut(s)	58, 463
BseX3I	CGGCCG	1 cut(s)	222
Bsh1236I	CGCG	2 cut(s)	170, 289
Bsh1285I	CGRYCG	1 cut(s)	225
BshFI	GGCC	4 cut(s)	173, 224, 364, 542
BshNI	GGYRCC	2 cut(s)	376, 554
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	5 cut(s)	221, 353, 361, 380, 483
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	3 cut(s)	169, 220, 617
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	694
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	4 cut(s)	173, 224, 364, 542
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	757
BspACI	CCGC	6 cut(s)	41, 145, 170, 192, 287, 289
BspANI	GGCC	4 cut(s)	173, 224, 364, 542
BspCNI	CTCAG	5 cut(s)	438, 515, 520, 576, 604
BspFNI	CGCG	2 cut(s)	170, 289
BspLI	GGNNCC	6 cut(s)	34, 351, 359, 378, 455, 556
BspMAI	CTGCAG	1 cut(s)	832
BspT107I	GGYRCC	2 cut(s)	376, 554
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	482
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	287, 353, 712
BssMI	GATC	1 cut(s)	757
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	712
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	308, 656
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	697
BstC8I	GCNNGC	2 cut(s)	342, 540
BstDEI	CTNAG	5 cut(s)	446, 502, 528, 563, 612
BstDSI	CCRYGG	1 cut(s)	287
BstFNI	CGCG	2 cut(s)	170, 289
BstKTI	GATC	1 cut(s)	760
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	757
BstMCI	CGRYCG	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	352, 364
BstSFI	CTRYAG	2 cut(s)	746, 828
BstUI	CGCG	2 cut(s)	170, 289
BstV2I	GAAGAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	614
BsuRI	GGCC	4 cut(s)	173, 224, 364, 542
BtgI	CCRYGG	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	15, 661
Cac8I	GCNNGC	2 cut(s)	342, 540
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	43, 453
Cfr42I	CCGCGG	1 cut(s)	290
CseI	GACGC	2 cut(s)	223, 705
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	464, 469
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	5 cut(s)	446, 502, 528, 563, 612
DpnI	GATC	1 cut(s)	759
DpnII	GATC	1 cut(s)	757
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	222
EagI	CGGCCG	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	712
Eco147I	AGGCCT	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	43, 453
Eco52I	CGGCCG	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	2 cut(s)	467, 472
FaiI	YATR	7 cut(s)	323, 402, 465, 470, 570, 662, 776
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	2 cut(s)	463, 468
FauI	CCCGC	2 cut(s)	152, 282
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	171, 287
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	171, 287
FspBI	CTAG	2 cut(s)	533, 713
GluI	GCNGC	2 cut(s)	171, 287
HaeIII	GGCC	4 cut(s)	173, 224, 364, 542
HapII	CCGG	5 cut(s)	221, 353, 361, 380, 483
HgaI	GACGC	2 cut(s)	223, 705
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	2 cut(s)	467, 472
HinfI	GANTC	5 cut(s)	437, 500, 607, 803, 852
HpaII	CCGG	5 cut(s)	221, 353, 361, 380, 483
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	333, 421
Hpy188I	TCNGA	6 cut(s)	205, 447, 516, 529, 566, 682
Hpy188III	TCNNGA	4 cut(s)	261, 334, 611, 797
Hpy8I	GTNNAC	2 cut(s)	333, 421
HpyAV	CCTTC	5 cut(s)	89, 108, 467, 628, 879
HpyCH4III	ACNGT	2 cut(s)	308, 656
HpyCH4V	TGCA	3 cut(s)	668, 782, 830
HpyF3I	CTNAG	5 cut(s)	446, 502, 528, 563, 612
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	2 cut(s)	467, 472
KspI	CCGCGG	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	757
LmnI	GCTCC	3 cut(s)	4, 38, 71
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	533, 713
MaeIII	GTNAC	5 cut(s)	235, 308, 656, 701, 730
MalI	GATC	1 cut(s)	759
MboI	GATC	1 cut(s)	757
MboII	GAAGA	8 cut(s)	74, 93, 174, 177, 421, 465, 540, 847
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	7 cut(s)	149, 164, 256, 521, 628, 689, 726
MlyI	GAGTC	2 cut(s)	446, 494
MmeI	TCCRAC	1 cut(s)	133
MseI	TTAA	4 cut(s)	692, 722, 848, 878
MspA1I	CMGCKG	2 cut(s)	41, 289
MspI	CCGG	5 cut(s)	221, 353, 361, 380, 483
MspR9I	CCNGG	2 cut(s)	354, 366
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	2 cut(s)	170, 289
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	757
NlaIII	CATG	2 cut(s)	467, 472
NlaIV	GGNNCC	6 cut(s)	34, 351, 359, 378, 455, 556
NmuCI	GTSAC	3 cut(s)	235, 656, 701
NspI	RCATGY	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	542
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	607, 803, 852
PflFI	GACNNNGTC	2 cut(s)	503, 699
PkrI	GCNGC	2 cut(s)	172, 288
PleI	GAGTC	2 cut(s)	445, 494
PpsI	GAGTC	2 cut(s)	445, 494
PpuMI	RGGWCCY	1 cut(s)	453
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	6 cut(s)	34, 351, 359, 378, 455, 556
PspPI	GGNCC	2 cut(s)	43, 453
PspPPI	RGGWCCY	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	832
PsyI	GACNNNGTC	2 cut(s)	503, 699
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	9
SacII	CCGCGG	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	692, 722, 848, 878
SatI	GCNGC	2 cut(s)	171, 287
Sau3AI	GATC	1 cut(s)	757
Sau96I	GGNCC	2 cut(s)	43, 453
SchI	GAGTC	2 cut(s)	446, 494
ScrFI	CCNGG	2 cut(s)	354, 366
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	746, 828
Sfr303I	CCGCGG	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	43, 453
Sse9I	AATT	7 cut(s)	149, 164, 256, 521, 628, 689, 726
SseBI	AGGCCT	1 cut(s)	542
SsiI	CCGC	6 cut(s)	41, 145, 170, 192, 287, 289
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	2 cut(s)	533, 713
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	352, 364
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	2 cut(s)	308, 656
TaqI	TCGA	1 cut(s)	327
TasI	AATT	7 cut(s)	149, 164, 256, 521, 628, 689, 726
TauI	GCSGC	2 cut(s)	173, 289
TfiI	GAWTC	3 cut(s)	607, 803, 852
Tru1I	TTAA	4 cut(s)	692, 722, 848, 878
Tru9I	TTAA	4 cut(s)	692, 722, 848, 878
TscAI	CASTG	2 cut(s)	22, 661
TseFI	GTSAC	3 cut(s)	235, 656, 701
Tsp45I	GTSAC	3 cut(s)	235, 656, 701
TspDTI	ATGAA	1 cut(s)	816
TspRI	CASTG	2 cut(s)	22, 661
Tth111I	GACNNNGTC	2 cut(s)	503, 699
VpaK11BI	GGWCC	2 cut(s)	43, 453
XapI	RAATTY	2 cut(s)	521, 628
XceI	RCATGY	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XmaJI	CCTAGG	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	420
XspI	CTAG	2 cut(s)	533, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.