Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006112.1

Orthogroup ID

OG0011134

Physical Location & Seq

Genomic Coordinates Forward (+)

27262 .. 30066

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006112.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atggagctctgcctcactgccatcaatggtggctccacagcggtcctcaactcaaacccatcacgctcctcaccctcccttcttctccccaaaaacccttcttctctccaactctacacttctcgcagacccccctcgctttcccgccaattccaccctctccaattcgcggcctcgtcctcttcttccaccgctaccacctccgagatagaccaacttccggccgacatcagcgtcacagagacccagcaacccaattccagagtgaagttgagcgtacaagtgccgcgggaggtctgcgatgactgttacaaaaaggttatagtcgagttcacgaagcaagcaaaggttccggggttccggcctggaaagagggtgccggagagtattcttgtgagttatgtggggaagaaaagtgtagacaaggctaccattgagtctattctgaggaggacccttccacatgccatgtcttcaatgaccggcacggctttgacagactcagtcagcattctgaccaaattttctgagctagagcaggcctattcttctggcacctctctcagatatgatgtgatggttgatgtagcaccagaagtgaaatggattcctgagaatggatacaagaatttgaaggtcgccgttgagatagacagtgacatagatgcacaaaaggtttctgaacaagaattaagacgccgtcacaagtccctaggggctttaagaattgtaactgacagaggactacagtcttccaggtaccaaaatgagtggcaaatgacaggaaatgacagggtgcataattgtatatggaaaacagggaaaataggcaaactggaaattgggcccgaaaaagcccgaaaagcccgaaagcccgaaccggcccgaaccggttcggtttatgtcggttttcatttcgaaaaaagcccgaaccggcccgaaccgatattctcggtttcggtctcggtttcactgatttttgggcccggcccgacccgagcccaggcctacacgtattgctttgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_C Trigger_N

Protein Analysis

342

Amino Acids

37.82

Weight (kDa)

9.51

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55220
fragaria_vesca	FvH4_3g23540 FvH4_3g23540 FvH4_3g23540
malus_domestica	MD11G1209500.v1.1
prunus_persica	Prupe.4G223000_v2.0.a1
pyrus_communis	pycom11g18500
rosa_chinensis	RchiOBHm_Chr5g0041541
rosa_laevigata	RLG00000034077
rosa_multiflora	Rmu_sc0006112.1_g000004 Rmu_sc0014067.1_g000006 Rmu_sc0021997.1_g000001 Rmu_sc0029151.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038980
rosa_rugosa	Rorug05G0193400
rosa_samantha	Rh5AG279000 Rh5BG283400 Rh5CG316300 Rh5DG293100
rosa_wichuraiana	Rw5G026280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
Acc65I	GGTACC	1 cut(s)	759
AccB1I	GGYRCC	3 cut(s)	376, 554, 759
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	2 cut(s)	170, 289
AciI	CCGC	6 cut(s)	41, 145, 170, 192, 287, 289
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	521, 628
AcyI	GRCGYC	1 cut(s)	697
AfaI	GTAC	2 cut(s)	279, 761
AfiI	CCNNNNNNNGG	4 cut(s)	169, 220, 617, 1003
AflIII	ACRYGT	1 cut(s)	1011
AgeI	ACCGGT	1 cut(s)	890
AgsI	TTSAA	2 cut(s)	477, 634
AjnI	CCWGG	3 cut(s)	364, 755, 1002
AluBI	AGCT	2 cut(s)	7, 532
AluI	AGCT	2 cut(s)	7, 532
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	236, 967
Ama87I	CYCGRG	1 cut(s)	996
ApaI	GGGCCC	2 cut(s)	849, 987
ApoI	RAATTY	2 cut(s)	521, 628
AsiGI	ACCGGT	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	892
Asp718I	GGTACC	1 cut(s)	759
AspA2I	CCTAGG	1 cut(s)	712
AspS9I	GGNCC	9 cut(s)	43, 453, 845, 846, 883, 936, 983, 984, 989
AsuC2I	CCSGG	2 cut(s)	354, 987
AsuHPI	GGTGA	1 cut(s)	63
AsuII	TTCGAA	1 cut(s)	918
AvaI	CYCGRG	1 cut(s)	996
AvaII	GGWCC	2 cut(s)	43, 453
AvrII	CCTAGG	1 cut(s)	712
BaeGI	GKGCMC	2 cut(s)	849, 987
BanI	GGYRCC	3 cut(s)	376, 554, 759
BanII	GRGCYC	4 cut(s)	9, 849, 987, 1003
BbsI	GAAGAC	2 cut(s)	465, 744
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	3 cut(s)	29, 67, 571
BceAI	ACGGC	3 cut(s)	504, 626, 684
BciT130I	CCWGG	3 cut(s)	366, 757, 1004
BciVI	GTATCC	1 cut(s)	614
BcnI	CCSGG	2 cut(s)	354, 987
BcoDI	GTCTC	2 cut(s)	236, 967
BfaI	CTAG	2 cut(s)	533, 713
BfmI	CTRYAG	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	614
BisI	GCNGC	2 cut(s)	171, 287
BlnI	CCTAGG	1 cut(s)	712
BlsI	GCNGC	2 cut(s)	172, 288
Bme1390I	CCNGG	5 cut(s)	354, 366, 757, 987, 1004
Bme18I	GGWCC	2 cut(s)	43, 453
BmeT110I	CYCGRG	1 cut(s)	996
BmgT120I	GGNCC	9 cut(s)	43, 453, 845, 846, 883, 936, 983, 984, 989
BmiI	GGNNCC	9 cut(s)	34, 351, 359, 378, 455, 556, 761, 847, 985
BmrFI	CCNGG	5 cut(s)	354, 366, 757, 987, 1004
BmsI	GCATC	1 cut(s)	655
BoxI	GACNNNNGTC	1 cut(s)	748
BpiI	GAAGAC	2 cut(s)	465, 744
Bpu14I	TTCGAA	1 cut(s)	918
BpuMI	CCSGG	2 cut(s)	354, 987
BsaAI	YACGTR	1 cut(s)	1014
BsaHI	GRCGYC	1 cut(s)	697
BsaI	GGTCTC	2 cut(s)	236, 967
BsaJI	CCNNGG	4 cut(s)	287, 353, 712, 1002
BsaWI	WCCGGW	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	4 cut(s)	169, 220, 617, 1003
Bse118I	RCCGGY	4 cut(s)	482, 880, 890, 933
Bse1I	ACTGG	1 cut(s)	840
BseBI	CCWGG	3 cut(s)	366, 757, 1004
BseDI	CCNNGG	4 cut(s)	287, 353, 712, 1002
BseLI	CCNNNNNNNGG	4 cut(s)	169, 220, 617, 1003
BseMII	CTCAG	5 cut(s)	437, 516, 519, 577, 603
BseNI	ACTGG	1 cut(s)	840
BseRI	GAGGAG	2 cut(s)	58, 463
BseSI	GKGCMC	2 cut(s)	849, 987
BseX3I	CGGCCG	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	246
Bsh1236I	CGCG	2 cut(s)	170, 289
Bsh1285I	CGRYCG	1 cut(s)	225
BshNI	GGYRCC	3 cut(s)	376, 554, 759
BshTI	ACCGGT	1 cut(s)	890
BsiEI	CGRYCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	996
BsiSI	CCGG	9 cut(s)	221, 353, 361, 380, 483, 881, 891, 934, 987
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	4 cut(s)	169, 220, 617, 1003
BsmAI	GTCTC	2 cut(s)	236, 967
BsmFI	GGGAC	1 cut(s)	694
BsmI	GAATGC	1 cut(s)	510
Bso31I	GGTCTC	2 cut(s)	236, 967
BsoBI	CYCGRG	1 cut(s)	996
Bsp119I	TTCGAA	1 cut(s)	918
Bsp120I	GGGCCC	2 cut(s)	845, 983
Bsp1286I	GDGCHC	4 cut(s)	9, 849, 987, 1003
BspACI	CCGC	6 cut(s)	41, 145, 170, 192, 287, 289
BspCNI	CTCAG	5 cut(s)	438, 515, 520, 576, 604
BspFNI	CGCG	2 cut(s)	170, 289
BspLI	GGNNCC	9 cut(s)	34, 351, 359, 378, 455, 556, 761, 847, 985
BspT104I	TTCGAA	1 cut(s)	918
BspT107I	GGYRCC	3 cut(s)	376, 554, 759
BspTNI	GGTCTC	2 cut(s)	236, 967
BsrFI	RCCGGY	4 cut(s)	482, 880, 890, 933
BsrI	ACTGG	1 cut(s)	840
BssAI	RCCGGY	4 cut(s)	482, 880, 890, 933
BssECI	CCNNGG	4 cut(s)	287, 353, 712, 1002
BssNI	GRCGYC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	712
Bst2UI	CCWGG	3 cut(s)	366, 757, 1004
Bst4CI	ACNGT	3 cut(s)	308, 656, 750
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	697
BstBAI	YACGTR	1 cut(s)	1014
BstBI	TTCGAA	1 cut(s)	918
BstC8I	GCNNGC	2 cut(s)	342, 540
BstDEI	CTNAG	5 cut(s)	446, 502, 528, 563, 612
BstDSI	CCRYGG	1 cut(s)	287
BstFNI	CGCG	2 cut(s)	170, 289
BstMAI	GTCTC	2 cut(s)	236, 967
BstMCI	CGRYCG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	863
BstNI	CCWGG	3 cut(s)	366, 757, 1004
BstNSI	RCATGY	1 cut(s)	467
BstPAI	GACNNNNGTC	1 cut(s)	748
BstSCI	CCNGG	5 cut(s)	352, 364, 755, 985, 1002
BstSFI	CTRYAG	1 cut(s)	746
BstSLI	GKGCMC	2 cut(s)	849, 987
BstUI	CGCG	2 cut(s)	170, 289
BstV2I	GAAGAC	2 cut(s)	465, 744
BstZI	CGGCCG	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	614
BtgI	CCRYGG	1 cut(s)	287
BtgZI	GCGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	15
BtsIMutI	CAGTG	3 cut(s)	15, 661, 971
Cac8I	GCNNGC	2 cut(s)	342, 540
Cfr10I	RCCGGY	4 cut(s)	482, 880, 890, 933
Cfr13I	GGNCC	9 cut(s)	43, 453, 845, 846, 883, 936, 983, 984, 989
Cfr42I	CCGCGG	1 cut(s)	290
CseI	GACGC	2 cut(s)	223, 705
Csp6I	GTAC	2 cut(s)	278, 760
CspAI	ACCGGT	1 cut(s)	890
CspCI	CAANNNNNGTGG	2 cut(s)	752, 787
CviAII	CATG	2 cut(s)	464, 469
CviQI	GTAC	2 cut(s)	278, 760
DdeI	CTNAG	5 cut(s)	446, 502, 528, 563, 612
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	222
EagI	CGGCCG	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Ecl136II	GAGCTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	712
Eco147I	AGGCCT	2 cut(s)	542, 1007
Eco24I	GRGCYC	4 cut(s)	9, 849, 987, 1003
Eco31I	GGTCTC	2 cut(s)	236, 967
Eco47I	GGWCC	2 cut(s)	43, 453
Eco52I	CGGCCG	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	996
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRII	CCWGG	3 cut(s)	364, 755, 1002
EcoT14I	CCWWGG	1 cut(s)	712
EcoT38I	GRGCYC	4 cut(s)	9, 849, 987, 1003
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	2 cut(s)	467, 472
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	2 cut(s)	463, 468
FauI	CCCGC	2 cut(s)	152, 282
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	171, 287
FriOI	GRGCYC	4 cut(s)	9, 849, 987, 1003
Fsp4HI	GCNGC	2 cut(s)	171, 287
FspBI	CTAG	2 cut(s)	533, 713
GluI	GCNGC	2 cut(s)	171, 287
GsaI	CCCAGC	1 cut(s)	250
HapII	CCGG	9 cut(s)	221, 353, 361, 380, 483, 881, 891, 934, 987
HgaI	GACGC	2 cut(s)	223, 705
Hin1I	GRCGYC	1 cut(s)	697
Hin1II	CATG	2 cut(s)	467, 472
HinfI	GANTC	3 cut(s)	437, 500, 607
HpaII	CCGG	9 cut(s)	221, 353, 361, 380, 483, 881, 891, 934, 987
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	333, 421
Hpy188I	TCNGA	6 cut(s)	205, 447, 516, 529, 566, 682
Hpy188III	TCNNGA	3 cut(s)	261, 334, 611
Hpy8I	GTNNAC	2 cut(s)	333, 421
HpyAV	CCTTC	4 cut(s)	89, 108, 467, 628
HpyCH4III	ACNGT	3 cut(s)	308, 656, 750
HpyCH4IV	ACGT	1 cut(s)	1013
HpyCH4V	TGCA	2 cut(s)	668, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	863
HpyF3I	CTNAG	5 cut(s)	446, 502, 528, 563, 612
HpySE526I	ACGT	1 cut(s)	1013
Hsp92I	GRCGYC	1 cut(s)	697
Hsp92II	CATG	2 cut(s)	467, 472
KpnI	GGTACC	1 cut(s)	763
KspI	CCGCGG	1 cut(s)	290
LmnI	GCTCC	3 cut(s)	4, 38, 71
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	2 cut(s)	533, 713
MaeII	ACGT	1 cut(s)	1013
MaeIII	GTNAC	5 cut(s)	235, 308, 656, 701, 730
MboII	GAAGA	8 cut(s)	74, 93, 174, 177, 421, 465, 540, 744
MhlI	GDGCHC	4 cut(s)	9, 849, 987, 1003
MluCI	AATT	9 cut(s)	149, 164, 256, 521, 628, 689, 726, 802, 840
MlyI	GAGTC	2 cut(s)	446, 494
MmeI	TCCRAC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	892
MseI	TTAA	2 cut(s)	692, 722
MspA1I	CMGCKG	2 cut(s)	41, 289
MspI	CCGG	9 cut(s)	221, 353, 361, 380, 483, 881, 891, 934, 987
MspR9I	CCNGG	5 cut(s)	354, 366, 757, 987, 1004
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	3 cut(s)	366, 757, 1004
MvnI	CGCG	2 cut(s)	170, 289
MwoI	GCNNNNNNNGC	1 cut(s)	863
NciI	CCSGG	2 cut(s)	354, 987
NlaIII	CATG	2 cut(s)	467, 472
NlaIV	GGNNCC	9 cut(s)	34, 351, 359, 378, 455, 556, 761, 847, 985
NmuCI	GTSAC	3 cut(s)	235, 656, 701
NspI	RCATGY	1 cut(s)	467
NspV	TTCGAA	1 cut(s)	918
PceI	AGGCCT	2 cut(s)	542, 1007
PctI	GAATGC	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	892
PfeI	GAWTC	1 cut(s)	607
PflFI	GACNNNGTC	2 cut(s)	503, 699
PinAI	ACCGGT	1 cut(s)	890
PkrI	GCNGC	2 cut(s)	172, 288
PleI	GAGTC	2 cut(s)	445, 494
PpsI	GAGTC	2 cut(s)	445, 494
Ppu21I	YACGTR	1 cut(s)	1014
PpuMI	RGGWCCY	1 cut(s)	453
PshAI	GACNNNNGTC	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	453
Psp6I	CCWGG	3 cut(s)	364, 755, 1002
PspFI	CCCAGC	1 cut(s)	246
PspGI	CCWGG	3 cut(s)	364, 755, 1002
PspN4I	GGNNCC	9 cut(s)	34, 351, 359, 378, 455, 556, 761, 847, 985
PspOMI	GGGCCC	2 cut(s)	845, 983
PspPI	GGNCC	9 cut(s)	43, 453, 845, 846, 883, 936, 983, 984, 989
PspPPI	RGGWCCY	1 cut(s)	453
PsyI	GACNNNGTC	2 cut(s)	503, 699
RsaI	GTAC	2 cut(s)	279, 761
RsaNI	GTAC	2 cut(s)	278, 760
SacI	GAGCTC	1 cut(s)	9
SacII	CCGCGG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	692, 722
SatI	GCNGC	2 cut(s)	171, 287
Sau96I	GGNCC	9 cut(s)	43, 453, 845, 846, 883, 936, 983, 984, 989
SchI	GAGTC	2 cut(s)	446, 494
ScrFI	CCNGG	5 cut(s)	354, 366, 757, 987, 1004
SduI	GDGCHC	4 cut(s)	9, 849, 987, 1003
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	1 cut(s)	746
Sfr303I	CCGCGG	1 cut(s)	290
SfuI	TTCGAA	1 cut(s)	918
SgrBI	CCGCGG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	43, 453
Sse9I	AATT	9 cut(s)	149, 164, 256, 521, 628, 689, 726, 802, 840
SseBI	AGGCCT	2 cut(s)	542, 1007
SsiI	CCGC	6 cut(s)	41, 145, 170, 192, 287, 289
SspMI	CTAG	2 cut(s)	533, 713
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	2 cut(s)	542, 1007
StyD4I	CCNGG	5 cut(s)	352, 364, 755, 985, 1002
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	3 cut(s)	308, 656, 750
TaiI	ACGT	1 cut(s)	1016
TaqI	TCGA	2 cut(s)	327, 918
TaqII	GACCGA	1 cut(s)	949
TasI	AATT	9 cut(s)	149, 164, 256, 521, 628, 689, 726, 802, 840
TauI	GCSGC	2 cut(s)	173, 289
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	2 cut(s)	692, 722
Tru9I	TTAA	2 cut(s)	692, 722
TscAI	CASTG	3 cut(s)	22, 661, 978
TseFI	GTSAC	3 cut(s)	235, 656, 701
Tsp45I	GTSAC	3 cut(s)	235, 656, 701
TspDTI	ATGAA	1 cut(s)	902
TspRI	CASTG	3 cut(s)	22, 661, 978
Tth111I	GACNNNGTC	2 cut(s)	503, 699
VpaK11BI	GGWCC	2 cut(s)	43, 453
XapI	RAATTY	2 cut(s)	521, 628
XceI	RCATGY	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	600
XmaJI	CCTAGG	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	892
XspI	CTAG	2 cut(s)	533, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.