RLG00000034518

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019200
Physical Location & Seq
Forward (+)
44197765 .. 44199327
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034518

Sequence Viewer

Length: 426 bp
ATGAATGAGGAAGCCAAGTCCAGAAGGAGACGTGCTTTCAAGGCTGATTTGAAAAGTAAGGAGTTGGGTGTAGCTAGCCTGAGCAAGGAGATGGTGGTGCAGCCTGTGGAGGTCGAGGAGGCTAGGGTTGACCCAGATGCTTTGAATTACTTGGATTCCACTGCCTTCACCTTCACGACAGCCACCATCGCCATAACCTCTGTCACCACTTCCATAGCCACCAACTCTGTCTTTATGACGAGTGACGCCACTACCGCCGCCTCTGCCACCGCTTTGATAGGACTAAGCCTTATTGACGGTAATGTTGCAGTCGTTAAGGTCCTGGCCGTTTATGCCTTCGATTGCATCCGTCATTGCCTTATTGTTGCTGTATATAATATCGGAGTTGGGGTTGAAGATGAAGAGGATAGGTGGGTATATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.2

Weight (kDa)

4.73

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019200)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10341
rosa_laevigata RLG00000034518
rosa_multiflora Rmu_sc0004955.1_g000005
rosa_samantha Rh5BG315600 Rh5BG328400 Rh5CG341900 Rh5DG325600 Rh5DG339500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 255, 258, 270
AcoI YGGCCR 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 4 cut(s) 40, 52, 145, 395
AjiI CACGTC 1 cut(s) 32
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 160, 196
AsuNHI GCTAGC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 85, 194
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 2 cut(s) 75, 123
BisI GCNGC 2 cut(s) 101, 258
BlsI GCNGC 2 cut(s) 102, 259
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 127, 354
BmtI GCTAGC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 323
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 326
BspACI CCGC 3 cut(s) 255, 258, 270
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 72
BspOI GCTAGC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 80, 284
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 22
BstMWI GCNNNNNNNGC 5 cut(s) 41, 188, 254, 263, 332
BstNI CCWGG 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 326
BtgZI GCGATG 1 cut(s) 172
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 319
CseI GACGC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 80, 284
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 22
FaiI YATR 8 cut(s) 194, 215, 236, 333, 373, 375, 418, 420
Fnu4HI GCNGC 2 cut(s) 101, 258
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 2 cut(s) 101, 258
FspBI CTAG 2 cut(s) 75, 123
GluI GCNGC 2 cut(s) 101, 258
HaeIII GGCC 1 cut(s) 326
HgaI GACGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 246
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 155
HphI GGTGA 2 cut(s) 160, 196
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 383
Hpy188III TCNNGA 2 cut(s) 21, 175
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 18, 175, 181, 346
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 100, 308, 345
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 188, 254, 263, 332
HpyF3I CTNAG 2 cut(s) 80, 284
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 246
LpnPI CCDG 6 cut(s) 34, 92, 117, 147, 308, 335
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 127, 354
MaeI CTAG 2 cut(s) 75, 123
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 2 cut(s) 202, 242
MboII GAAGA 2 cut(s) 407, 413
MluCI AATT 1 cut(s) 145
MnlI CCTC 6 cut(s) 103, 109, 112, 208, 271, 397
MseI TTAA 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 323
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 5 cut(s) 41, 188, 254, 263, 332
NheI GCTAGC 1 cut(s) 74
NmuCI GTSAC 2 cut(s) 202, 242
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 102, 259
PpuMI RGGWCCY 1 cut(s) 319
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspPI GGNCC 1 cut(s) 319
PspPPI RGGWCCY 1 cut(s) 319
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 101, 258
Sau96I GGNCC 1 cut(s) 319
ScrFI CCNGG 1 cut(s) 323
SetI ASST 7 cut(s) 34, 76, 114, 173, 200, 321, 413
SfaNI GCATC 2 cut(s) 127, 354
SinI GGWCC 1 cut(s) 319
Sse9I AATT 1 cut(s) 145
SsiI CCGC 3 cut(s) 255, 258, 270
SspMI CTAG 2 cut(s) 75, 123
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 114, 339
TasI AATT 1 cut(s) 145
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 202, 242
TseI GCWGC 1 cut(s) 100
Tsp45I GTSAC 2 cut(s) 202, 242
TspDTI ATGAA 2 cut(s) 17, 414
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 319
XagI CCTNNNNNAGG 1 cut(s) 83
XspI CTAG 2 cut(s) 75, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.