Rh5DG325600

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019200
Physical Location & Seq
Forward (+)
42642678 .. 42664179
21502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG325600.1

Sequence Viewer

Length: 1080 bp
ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGTTGACAAAACATGTTTGTGGCATATGCAAGAAGTGGAATCAGCCTGACAGTGGAAGTTGGGTTGTTGAAGGCCCTTGTAACTCTGTGCCTATTCCTGACGGGGCAGCTCTATCAGCATTTCAGTACTTCGAAAACGTCAGAAATTTCCTTGTGGCTGTGGAGGAATTGGGGCTTCCAACCTTTGAAGCCTTTGATTTGGAACAGATTGTGGAGGCAAAAGAGACGTTCAATACAAAGGAAGGTCATGCATTTCTACTTGACCATTGTTGGGTTATTTTGAGGTTTCAGCAAAAATGGATGGACGAACATCAAAAAATCGAAAGTAAGAGAAAGTTGAAGGCTTCTTCTAGTAAGGCTACATATTATATCAATTTAGAAGACGATGATACGAAAGCTCCTAAACCTACGAGCTTGAAGAGGCCAATTGGAAGAAAGGCTGCAAAGGAAGCGGTAAAAAAAGCAAAGTCCAAAGAACATGTTGGTGAAAATGAGAATGAATCTTCGAAAATCCGTTCTAAGTTGGAAGAGTTGAGGGTAAGGAGATTAGAAAGTGACCGCATAAAGGCAGAACAATTTAAGTTGCTACTTGTTACTGAGCAAAAGCAAGATGCTCTTAGAGAAAAGGAAATTGAACTTCAGGCTCGAAAAGCCTTACAGCTGTTGTTCATAGTTCATTCACCACTGAAATATGAAGACCCTTTTCAGGGTTGTGTGTTCCTCATTCCCAGAACTCCTCCAATCCCTCATCACTCACTTTCCCCTAGAAACCCATTTGTCTTGGCCCTCAGAGCCGGCCCATCTCCTGTGAATGAGCTTGCAGAAGAGAACATGCTCCAGACGTTCTTCAAGGAAAGACAGTTGAATGGAGACTTCATATCAAGACTTTTTGACGTGTTTTGGCAGAGGGAGTTTACGAATTTTGTTGATGGTGATGGTGTTGGCAACATTGATGACACTACTACTCAACAACAAGCAGAAAAGCAGTTTTGTGTTCATCAGGAAATCATGGCTTTGGAAGTTGTGGGCAAAACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

359

Amino Acids

41.02

Weight (kDa)

6.78

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 97 - 204 1.4e-11 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019200)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10341
rosa_laevigata RLG00000034518
rosa_multiflora Rmu_sc0004955.1_g000005
rosa_samantha Rh5BG315600 Rh5BG328400 Rh5CG341900 Rh5DG325600 Rh5DG339500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 491, 598
AcsI RAATTY 2 cut(s) 184, 958
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 5 cut(s) 92, 310, 604, 745, 746
AflIII ACRYGT 3 cut(s) 52, 517, 933
AgsI TTSAA 8 cut(s) 110, 227, 271, 379, 457, 674, 889, 904
AjiI CACGTC 1 cut(s) 934
AluBI AGCT 6 cut(s) 25, 149, 437, 453, 700, 856
AluI AGCT 6 cut(s) 25, 149, 437, 453, 700, 856
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 3 cut(s) 34, 257, 903
AoxI GGCC 4 cut(s) 112, 461, 822, 835
ApeKI GCWGC 2 cut(s) 146, 479
ApoI RAATTY 2 cut(s) 184, 958
AspS9I GGNCC 3 cut(s) 113, 823, 836
AsuHPI GGTGA 4 cut(s) 28, 536, 711, 983
AsuII TTCGAA 2 cut(s) 171, 545
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 426, 741
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 158, 466
BccI CCATC 4 cut(s) 334, 847, 962, 968
BcoDI GTCTC 3 cut(s) 34, 257, 903
BfaI CTAG 2 cut(s) 390, 804
BisI GCNGC 2 cut(s) 147, 480
BlsI GCNGC 2 cut(s) 148, 481
BmcAI AGTACT 1 cut(s) 167
BmgBI CACGTC 1 cut(s) 934
BmgT120I GGNCC 3 cut(s) 113, 823, 836
BmsI GCATC 1 cut(s) 640
BpiI GAAGAC 2 cut(s) 426, 741
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 860
Bpu14I TTCGAA 2 cut(s) 171, 545
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 310, 604, 745, 746
Bse118I RCCGGY 1 cut(s) 833
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 5 cut(s) 92, 310, 604, 745, 746
BseMII CTCAG 2 cut(s) 627, 841
BseRI GAGGAG 1 cut(s) 765
BseXI GCAGC 2 cut(s) 158, 466
BshFI GGCC 4 cut(s) 114, 463, 824, 837
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 834
BslI CCNNNNNNNGG 5 cut(s) 92, 310, 604, 745, 746
BsmAI GTCTC 3 cut(s) 34, 257, 903
BsmBI CGTCTC 2 cut(s) 34, 257
BsnI GGCC 4 cut(s) 114, 463, 824, 837
Bsp119I TTCGAA 2 cut(s) 171, 545
Bsp1286I GDGCHC 1 cut(s) 27
BspACI CCGC 2 cut(s) 491, 598
BspANI GGCC 4 cut(s) 114, 463, 824, 837
BspCNI CTCAG 2 cut(s) 628, 840
BspT104I TTCGAA 2 cut(s) 171, 545
BsrFI RCCGGY 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 833
Bst4CI ACNGT 3 cut(s) 92, 900, 1075
Bst6I CTCTTC 3 cut(s) 452, 561, 858
BstBI TTCGAA 2 cut(s) 171, 545
BstC8I GCNNGC 2 cut(s) 835, 858
BstDEI CTNAG 4 cut(s) 558, 636, 656, 827
BstF5I GGATG 1 cut(s) 345
BstMAI GTCTC 3 cut(s) 34, 257, 903
BstMWI GCNNNNNNNGC 4 cut(s) 155, 488, 689, 830
BstNSI RCATGY 3 cut(s) 56, 521, 874
BstV1I GCAGC 2 cut(s) 158, 466
BstV2I GAAGAC 2 cut(s) 426, 741
BsuRI GGCC 4 cut(s) 114, 463, 824, 837
BtrI CACGTC 1 cut(s) 934
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 97, 722
Cac8I GCNNGC 2 cut(s) 835, 858
Cfr10I RCCGGY 1 cut(s) 833
Cfr13I GGNCC 3 cut(s) 113, 823, 836
Csp6I GTAC 1 cut(s) 166
CviAII CATG 5 cut(s) 53, 287, 518, 871, 1048
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 4 cut(s) 558, 636, 656, 827
Eam1104I CTCTTC 3 cut(s) 452, 561, 858
EarI CTCTTC 3 cut(s) 452, 561, 858
Ecl136II GAGCTC 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 27
Esp3I CGTCTC 2 cut(s) 34, 257
FaeI CATG 5 cut(s) 56, 290, 521, 874, 1051
FalI AAGNNNNNCTT 2 cut(s) 639, 671
FatI CATG 5 cut(s) 52, 286, 517, 870, 1047
FauNDI CATATG 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 147, 480
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 147, 480
FspBI CTAG 2 cut(s) 390, 804
GluI GCNGC 2 cut(s) 147, 480
GsuI CTGGAG 1 cut(s) 860
HaeIII GGCC 4 cut(s) 114, 463, 824, 837
HapII CCGG 1 cut(s) 834
Hin1II CATG 5 cut(s) 56, 290, 521, 874, 1051
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HinfI GANTC 2 cut(s) 79, 539
HpaII CCGG 1 cut(s) 834
HphI GGTGA 4 cut(s) 28, 536, 711, 983
Hpy166II GTNNAC 2 cut(s) 45, 954
Hpy188I TCNGA 2 cut(s) 182, 830
Hpy188III TCNNGA 4 cut(s) 137, 877, 921, 1040
Hpy8I GTNNAC 2 cut(s) 45, 954
HpyAV CCTTC 4 cut(s) 13, 104, 275, 373
HpyCH4III ACNGT 3 cut(s) 92, 900, 1075
HpyCH4IV ACGT 4 cut(s) 177, 266, 881, 933
HpyCH4V TGCA 4 cut(s) 69, 290, 482, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 488, 689, 830
HpyF3I CTNAG 4 cut(s) 558, 636, 656, 827
HpySE526I ACGT 4 cut(s) 177, 266, 881, 933
Hsp92II CATG 5 cut(s) 56, 290, 521, 874, 1051
KroI GCCGGC 1 cut(s) 833
KroNI GCCGGC 1 cut(s) 835
LmnI GCTCC 3 cut(s) 22, 442, 879
LpnPI CCDG 9 cut(s) 99, 150, 665, 731, 781, 847, 858, 890, 1025
Lsp1109I GCAGC 2 cut(s) 158, 466
LweI GCATC 1 cut(s) 640
MaeI CTAG 2 cut(s) 390, 804
MaeII ACGT 4 cut(s) 177, 266, 881, 933
MaeIII GTNAC 3 cut(s) 119, 593, 631
MboII GAAGA 9 cut(s) 378, 431, 469, 483, 534, 578, 746, 875, 877
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 7 cut(s) 184, 206, 412, 465, 614, 669, 958
MmeI TCCRAC 2 cut(s) 242, 543
Mph1103I ATGCAT 1 cut(s) 292
MroNI GCCGGC 1 cut(s) 833
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 2 cut(s) 57, 522
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 1 cut(s) 834
MunI CAATTG 1 cut(s) 465
MwoI GCNNNNNNNGC 4 cut(s) 155, 488, 689, 830
NaeI GCCGGC 1 cut(s) 835
NdeI CATATG 1 cut(s) 65
NgoMIV GCCGGC 1 cut(s) 833
NlaIII CATG 5 cut(s) 56, 290, 521, 874, 1051
NmuCI GTSAC 1 cut(s) 593
NsiI ATGCAT 1 cut(s) 292
NspI RCATGY 3 cut(s) 56, 521, 874
NspV TTCGAA 2 cut(s) 171, 545
PciI ACATGT 2 cut(s) 52, 517
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 835
PfeI GAWTC 2 cut(s) 79, 539
PkrI GCNGC 2 cut(s) 148, 481
PscI ACATGT 2 cut(s) 52, 517
Psp124BI GAGCTC 1 cut(s) 27
PspPI GGNCC 3 cut(s) 113, 823, 836
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 57, 522
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 2 cut(s) 147, 480
Sau96I GGNCC 3 cut(s) 113, 823, 836
ScaI AGTACT 1 cut(s) 167
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 1 cut(s) 640
SfuI TTCGAA 2 cut(s) 171, 545
SmiMI CAYNNNNRTG 2 cut(s) 57, 522
Sse9I AATT 7 cut(s) 184, 206, 412, 465, 614, 669, 958
SsiI CCGC 2 cut(s) 491, 598
SspMI CTAG 2 cut(s) 390, 804
SstI GAGCTC 1 cut(s) 27
TaaI ACNGT 3 cut(s) 92, 900, 1075
TaiI ACGT 4 cut(s) 180, 269, 884, 936
TaqI TCGA 4 cut(s) 171, 360, 545, 685
TasI AATT 7 cut(s) 184, 206, 412, 465, 614, 669, 958
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 2 cut(s) 79, 539
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 2 cut(s) 97, 729
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 2 cut(s) 146, 479
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 6 cut(s) 552, 697, 704, 747, 904, 1025
TspGWI ACGGA 2 cut(s) 30, 542
TspRI CASTG 2 cut(s) 97, 729
XapI RAATTY 2 cut(s) 184, 958
XceI RCATGY 3 cut(s) 56, 521, 874
XspI CTAG 2 cut(s) 390, 804
ZrmI AGTACT 1 cut(s) 167
Zsp2I ATGCAT 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.