Rmu_co8054592.1_g000001

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8054592.1
OG0017297
Physical Location & Seq
Reverse (-)
2 .. 512
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8054592.1_g000001.1.cds

Sequence Viewer

Length: 511 bp
atgttcttgcctgcaaatatccctgggtacagtaataacaacattcagttgttgcatgtgcaactcggacgcaacctgttcatcgatcgacaaaatcctgttcttgcagtatcatcagaagtagcagcaaatccccaacatgcaactcacatgatattcggtttcgtcgatttggcacccctgttcatgatgcccagacacgtggcgtttaaaggggataacggcgattaccttcggttcatgtcgatcaacaaccagccatttctacagttcagttccggcgtcgataaatggcatctatcggtgttgcacgaggtctctaacgacgttactgattatggaaactttcgcattaggtgcaatgctagcaatgtcaacgacggattctggaggcgtaaccgtgattctgatgctgaatggattcatgccgactcagttctcttgccccacaactcgcccttgagccaccgctggggcgacacccattttacggccgtcaaggttgcagaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aerolysin Agglutinin ETX_MTX2 Fascin

Protein Analysis

170

Amino Acids

19.36

Weight (kDa)

6.34

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017297)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g03090 FvH4_6g05700 FvH4_6g22110
rosa_chinensis RchiOBHm_Chr3g0479441
rosa_laevigata RLG00000023573
rosa_multiflora Rmu_co8054592.1_g000001 Rmu_sc0003405.1_g000001 Rmu_sc0015035.1_g000004
rosa_roxburghii Rroxscaffold_6G00402270
rosa_rugosa Rorug03G0175300
rosa_samantha Rh3CG255500 Rh3DG251700
rosa_wichuraiana Rw3G020220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 1 cut(s) 469
AcoI YGGCCR 1 cut(s) 492
AcvI CACGTG 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 472, 490
AflIII ACRYGT 1 cut(s) 199
AjnI CCWGG 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 322
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 420
AsuNHI GCTAGC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 175
BauI CACGAG 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 202
BbvI GCAGC 1 cut(s) 137
BceAI ACGGC 3 cut(s) 238, 479, 507
BciT130I CCWGG 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 3 cut(s) 180, 304, 400
BmtI GCTAGC 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 2 cut(s) 22, 23
Bsc4I CCNNNNNNNGG 2 cut(s) 472, 490
Bse3DI GCAATG 2 cut(s) 367, 376
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 22, 23
BseLI CCNNNNNNNGG 2 cut(s) 472, 490
BseMI GCAATG 2 cut(s) 367, 376
BseMII CTCAG 1 cut(s) 447
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 471
Bsh1285I CGRYCG 2 cut(s) 88, 495
BshFI GGCC 1 cut(s) 494
BshNI GGYRCC 1 cut(s) 175
BshVI ATCGAT 1 cut(s) 84
BsiEI CGRYCG 2 cut(s) 88, 495
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 472, 490
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 85, 246
BspACI CCGC 1 cut(s) 469
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 1 cut(s) 446
BspDI ATCGAT 1 cut(s) 84
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 177
BspOI GCTAGC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 322
BsrDI GCAATG 2 cut(s) 367, 376
BssECI CCNNGG 2 cut(s) 22, 23
BssMI GATC 2 cut(s) 85, 246
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 32, 270, 401
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 12, 367
BstDEI CTNAG 1 cut(s) 433
BstKTI GATC 2 cut(s) 88, 249
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 85, 246
BstMCI CGRYCG 2 cut(s) 88, 495
BstMWI GCNNNNNNNGC 2 cut(s) 357, 366
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 2 cut(s) 59, 143
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 202
BstZI CGGCCG 1 cut(s) 492
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 1 cut(s) 494
BsuTUI ATCGAT 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 12, 367
CciI TCATGA 1 cut(s) 186
ClaI ATCGAT 1 cut(s) 84
CseI GACGC 2 cut(s) 78, 271
Csp6I GTAC 1 cut(s) 28
CviAII CATG 6 cut(s) 56, 140, 151, 187, 241, 425
CviJI RGCY 3 cut(s) 259, 465, 494
CviKI_1 RGCY 3 cut(s) 259, 465, 494
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 433
DpnI GATC 2 cut(s) 87, 248
DpnII GATC 2 cut(s) 85, 246
DraI TTTAAA 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 492
EagI CGGCCG 1 cut(s) 492
EclXI CGGCCG 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 322
Eco52I CGGCCG 1 cut(s) 492
Eco72I CACGTG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 6 cut(s) 59, 143, 154, 190, 244, 428
FaiI YATR 7 cut(s) 57, 141, 152, 188, 242, 339, 426
FatI CATG 6 cut(s) 55, 139, 150, 186, 240, 424
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 366
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 1 cut(s) 494
HapII CCGG 1 cut(s) 279
HgaI GACGC 2 cut(s) 78, 271
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 6 cut(s) 59, 143, 154, 190, 244, 428
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 4 cut(s) 384, 404, 421, 431
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 68, 118, 409
Hpy188III TCNNGA 2 cut(s) 187, 388
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 4 cut(s) 170, 287, 329, 383
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 3 cut(s) 32, 270, 401
HpyCH4IV ACGT 2 cut(s) 201, 327
HpyCH4V TGCA 8 cut(s) 14, 55, 61, 107, 143, 310, 360, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 357, 366
HpyF3I CTNAG 1 cut(s) 433
HpySE526I ACGT 2 cut(s) 201, 327
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 6 cut(s) 59, 143, 154, 190, 244, 428
Kzo9I GATC 2 cut(s) 85, 246
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 3 cut(s) 180, 304, 400
MaeI CTAG 1 cut(s) 366
MaeII ACGT 2 cut(s) 201, 327
MaeIII GTNAC 2 cut(s) 328, 395
MalI GATC 2 cut(s) 87, 248
MboI GATC 2 cut(s) 85, 246
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 2 cut(s) 307, 384
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 471
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 357, 366
NdeII GATC 2 cut(s) 85, 246
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 6 cut(s) 59, 143, 154, 190, 244, 428
NlaIV GGNNCC 1 cut(s) 177
NspI RCATGY 2 cut(s) 59, 143
PagI TCATGA 1 cut(s) 186
PasI CCCWGGG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 384, 404, 421
PkrI GCNGC 1 cut(s) 127
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 425
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
PpsI GAGTC 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 22
PspCI CACGTG 1 cut(s) 202
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 177
PvuI CGATCG 1 cut(s) 88
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 85, 246
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 24
SetI ASST 7 cut(s) 78, 204, 234, 318, 330, 359, 504
SfaNI GCATC 3 cut(s) 180, 304, 400
SfcI CTRYAG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
SsiI CCGC 1 cut(s) 469
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 3 cut(s) 32, 270, 401
TaiI ACGT 2 cut(s) 204, 330
TaqI TCGA 5 cut(s) 84, 88, 168, 245, 285
TfiI GAWTC 3 cut(s) 384, 404, 421
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 4 cut(s) 70, 175, 229, 413
TspGWI ACGGA 1 cut(s) 396
XceI RCATGY 2 cut(s) 59, 143
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.